KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:30 2014 Check: 00 .. Name: ENSBTAP00000020742/1-641 Len: 728 Check: 9646 Weight: 1.00 Name: ENSP00000439594/1-680 Len: 728 Check: 3059 Weight: 1.00 Name: ENSTTRP00000005397/1-639 Len: 728 Check: 5720 Weight: 1.00 Name: bmy_05173T0/1-654 Len: 728 Check: 6793 Weight: 1.00 Name: BACU019054/1-632 Len: 728 Check: 9539 Weight: 1.00 // 1 50 ENSBTAP00000020742/1-641 -----MALSL EEFIHSLDLR TLPRVLEIQ- ---------- --------SG ENSP00000439594/1-680 -----MALSL EEFVHSLDLR TLPRVLEIQ- ---------- --------AG ENSTTRP00000005397/1-639 -----MALSL EEFIHSLDLR TLPRVLEVQ- ---------- --------SG bmy_05173T0/1-654 MAARGRLMQV QLPLAGRKIR HGGTGLEREG CKSWKTSLVR RVGSDAEGAA BACU019054/1-632 -----MALSL EEFIHSLDLR TLPRVLEIQ- ---------- --------SG 51 100 ENSBTAP00000020742/1-641 FYFEGSIYEM FGNECCLSTG EVIKITDLKI KKIMAEICEH VEGCVSPQSF ENSP00000439594/1-680 IYLEGSIYEM FGNECCFSTG EVIKITGLKV KKIIAEICEQ IEGCESLQPF ENSTTRP00000005397/1-639 FYFEGSIYEM FGNECCLSTG EVIKITGLKI KKIIAEICEH IEGCEAPQPF bmy_05173T0/1-654 PSLEGSIYEM FGNECCLSTG EVIKITGLKI KKIIAEICEH TEGCESPQPF BACU019054/1-632 FYFEGSIYEM FGNECCLSTG EVIKITGLKI KKIIAEICEH TEGCESPQPF 101 150 ENSBTAP00000020742/1-641 ELPMNFP--- ---------- ---------- -GLFKIVADT TPYLTMEEIT ENSP00000439594/1-680 ELPMNFP--- ---------- ---------- -GLFKIVADK TPYLTMEEIT ENSTTRP00000005397/1-639 ELPMNFP--- ---------- ---------- -GLFKIVADK TPYLTMEEIT bmy_05173T0/1-654 ELPMNFPGTL PRIVIWKIEF YEHTPYEQFL LGLFKIVADK TPYLTMEEIT BACU019054/1-632 ELPMNFP--- ---------- ---------- -GLFKIVADK TPYLTMEEIT 151 200 ENSBTAP00000020742/1-641 KANHIRPSRP NHPCFYHQKD IKLENLIIKK GERIMLNSVE EINGEIMVNC ENSP00000439594/1-680 RTIHIGPSRL GHPCFYHQKD IKLENLIIKQ GEQIMLNSVE EIDGEIMVSC ENSTTRP00000005397/1-639 RAIRIGPSRL GHPCFYHQKD IKLENLIIKQ GEQIMLNSVE EINGEIMVNC bmy_05173T0/1-654 RTIHIGPSRL GHPCFYHQKD IKLENLIIKH GEQIMLNSVE EINGEIMVNC BACU019054/1-632 RTIHIGPSRL GHPCFYHQKD IKLENLIIKH GEQIMLNSVE EINGEIMVNC 201 250 ENSBTAP00000020742/1-641 SVLRNHQNHS FTLPLSQEGE FYECEDEHIY TLKEIIQWKI PKNRTRTVIL ENSP00000439594/1-680 AVARNHQTHS FNLPLSQEGE FYECEDERIY TLKEIVEWKI PKNRTRTVNL ENSTTRP00000005397/1-639 GVLRNHQNHS FTLPLSQEGE FYECDDEHIY TLKEIVQWKI PKNRTRTVKL bmy_05173T0/1-654 GVLRNHQNHS FTLPLSQEGE FYECDDEHIY TLKEIVQWKI PKNRTRTVKL BACU019054/1-632 GVLRNHQNHS FTLPLSQEGE FYECDDEHIY TLKEIVQWKI PKNRTRTVKL 251 300 ENSBTAP00000020742/1-641 TGFSAKWDST NPFPRGFYGA VILKPVYEIQ AVMKFRKDIV RILPSLDVEV ENSP00000439594/1-680 TDFSNKWDST NPFPKDFYGT LILKPVYEIQ GVMKFRKDII RILPSLDVEV ENSTTRP00000005397/1-639 TDFSNKWDLT NPFPKGFYGA VILKPVYEIQ GVMKFRKDIV RILPSLDVEV bmy_05173T0/1-654 TDFSNKWDLT NPFPKGFYGA VILKPVYEIQ ----VRKDIV RILPSLDVEV BACU019054/1-632 TDFSNKWDLT NPFPKGFYGA VILKPVYEIQ GVMKFRKDIV RILPSLDVEV 301 350 ENSBTAP00000020742/1-641 KDITDSYDAN WFLQVLSTQD LYEMANKQFP IVAEVIEAPQ GNQLPISILQ ENSP00000439594/1-680 KDITDSYDAN WFLQLLSTED LFEMTSKEFP IVTEVIEAPE GNHLPQSILQ ENSTTRP00000005397/1-639 KDITDSYDSN WFLQLLSTQD LFEMTSKEFP VVAEVIEAPQ GNQLPRNVLQ bmy_05173T0/1-654 KDITDSYDSN WFLQLLSTQD LFEMTSKEFP IVAEVIEAPQ GNQLPRNVLQ BACU019054/1-632 KDITDSYDSN WFLQLLSTQD LFEMTSKEFP IVAEVIEAPQ GNQLPRNVLQ 351 400 ENSBTAP00000020742/1-641 PGKTIVIHKK CQASKILASE IRSNSSKRHF LIPTSYKGKF KRRPREFPTA ENSP00000439594/1-680 PGKTIVIHKK YQASRILASE IRSNFPKRHF LIPTSYKGKF KRRPREFPTA ENSTTRP00000005397/1-639 PGKTIVIHKK CQASRILASE IRSNFPKRHF LIPPSYKGKF KRRPREFPTP bmy_05173T0/1-654 PGKTIVIHKK CQASRILASE IRSNFPKRHF LIPPSYKGKF KRRPREFPTP BACU019054/1-632 PGKTIVIHKK CQASRILASE IRSNFPKRHF LIPPSYKGKF KRRPREFPTP 401 450 ENSBTAP00000020742/1-641 YDLEIAKSEK EPLHVVATKA FHSPFEELSS VSVGDEFLVH HSQTTEVLCE ENSP00000439594/1-680 YDLEIAKSEK EPLHVVATKA FHSPHDKLSS VSVGDQFLVH QSETTEVLCE ENSTTRP00000005397/1-639 YDLGIAKSEK EPLHVVATKA FHSPHDELSS VSAGDQFLVQ HSQTTEVLCE bmy_05173T0/1-654 YDLEIAKSEK EPLHVVATKA FHSPHDELSS VSAGDQFLVH HSXTTEVLCE BACU019054/1-632 YDLEIAKSEK EPLHVVATKA FHSPHDELSS VSAGDQFLVH HSQTTEVLCE 451 500 ENSBTAP00000020742/1-641 GIKKVMDGLA CEKILKNSRE VALLPLYMDG GFVEVIHDKK LYQISELCAQ ENSP00000439594/1-680 GIKKVVNVLA CEKILKKSYE AALLPLYMEG GFVEVIHDKK QYPISELCKQ ENSTTRP00000005397/1-639 GIKKVVNVLA CEKILKKSYE AALLPLYMEG DFVEVIHDKK QYQISELCAQ bmy_05173T0/1-654 GIKKVVNVLA CEKILKKSYE AALLPLYMEG GFVEVIHDKK QYQISELCAQ BACU019054/1-632 GIKKVVNVLA CEKILKKSYE AALLPLYMEG GFVEVIHDKK QYQISELCAQ 501 550 ENSBTAP00000020742/1-641 FRLPFNVKVS VRDLFIEKDI LAAIPGLQLE ESITNSYLLI SDLANPKKCW ENSP00000439594/1-680 FRLPFNVKVS VRDLSIEEDV LAATPGLQLE EDITDSYLLI SDFANPTECW ENSTTRP00000005397/1-639 FHLPFNVKVS VRDLFTEEDI LAATPGLRLE EAITDSYLLI SDFANPKECW bmy_05173T0/1-654 FHLPFNVKVS VRDLFTEEDI LAATPGLRLE EAITDSYLLI SDFANPKECW BACU019054/1-632 FHLPFNVKVS VRDLFTEEDI LAATPGLRLE EAITDSYLLI SDFANPKECW 551 600 ENSBTAP00000020742/1-641 EIPVGRVNMT VQLVNNFSGD TGSFLVSTLV EEITEEQYYL IRRYEKSFLH ENSP00000439594/1-680 EIPVGRLNMT VQLVSNFSRD AEPFLVRTLV EEITEEQYYM MRRYESSASH ENSTTRP00000005397/1-639 EIPAGRVNMT VQLVNNLSGD PGSFLV-TLV EEIPEQ-YYM MRRYENSFSY bmy_05173T0/1-654 EIPAGRVNMT VQLVNNLSGD PGSFLVRTLV EEIPEEQYYM MRRYENSFSY BACU019054/1-632 EIPAGRVNMT VQLVNNLSGD PGSFLVRTLV EEIPEEQYYM MRRYENSFSY 601 650 ENSBTAP00000020742/1-641 PPPRPPKHPS VEKIELTPLS LAKQKTVNLP KSPKS----- ---------- ENSP00000439594/1-680 PPPRPPKHPS VEETKLTLLT LAEERTVDLP KSPKAGVQWR DLGSLQPLPP ENSTTRP00000005397/1-639 PPTXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXS----- ---------- bmy_05173T0/1-654 PPPRPPKHPS VEETKLSLLS LAEEKTVGLP KSPKS----- ---------- BACU019054/1-632 PPPRPPKHPS VEETKFSLLS LAEEKTVGLP KSPKS----- ---------- 651 700 ENSBTAP00000020742/1-641 ---------- ---------- ----VHVDRS KKLYSNQAGL DSKVPAGCQN ENSP00000439594/1-680 GFKQFSASAS HVAGITGTPH HVQRHHVDIT KKLHPNQAGL DSKVLIGSQN ENSTTRP00000005397/1-639 ---------- ---------- ----LHVDRS KKLHSSQAGL DSKVPVGCQN bmy_05173T0/1-654 ---------- ---------- ---------- ---------- ---------- BACU019054/1-632 ---------- ---------- ----LRVDRS KKLHSNQAGL DSKVPVGCQN 701 750 ENSBTAP00000020742/1-641 DLADLEKEKR KTEATAVTEI FKTEEHKK ENSP00000439594/1-680 DLVDEEKERS NRGATAIAET FKNEKHQK ENSTTRP00000005397/1-639 DLADLEKEKR KTGKTAVAEI FKNEKRQK bmy_05173T0/1-654 ---SWRKLEK VKGIVMSANW FATLEH-- BACU019054/1-632 DLADLEKEKR KTGETAVAD- --------