KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:12:31 2014 Check: 00 .. Name: ENSBTAP00000020753/1-786 Len: 935 Check: 2106 Weight: 1.00 Name: ENSP00000342075/1-457 Len: 935 Check: 6624 Weight: 1.00 Name: bmy_08405T0/1-721 Len: 935 Check: 9433 Weight: 1.00 Name: ENSTTRP00000005039/1-844 Len: 935 Check: 9677 Weight: 1.00 // 1 50 ENSBTAP00000020753/1-786 -QDFIDLTRE TRPRAKDRSG LCVIDLTGSE EENRPIATLD LTLEPVAPSQ ENSP00000342075/1-457 MEDFI----- ---------- -VISDDSGSE SSG------- ---------- bmy_08405T0/1-721 --DFIDLTRE TRPRAKDRNG LCVIDLTGSE EENRPIATLD LTLEPVAPSQ ENSTTRP00000005039/1-844 --DFIDLTRE TRPRAKDRNG LCVIDLTGSE EENRPIATLD LTLEPVAPSQ 51 100 ENSBTAP00000020753/1-786 KEPASLQACA SLCSKETVEG WVDRSSRPAA RRVINSDPVD LDLLEETAFE ENSP00000342075/1-457 ---------- ---------- ----GARPGR SR-------- ---------- bmy_08405T0/1-721 KEPASLQACA SLSSKEVMEG RVDRSSRPAA RRIINSDPVD LDLLEETAFE ENSTTRP00000005039/1-844 KEPASLQACA SLSSKEVMEG RVDRSSRPAA RRIINSDPVD LDLLEETAFE 101 150 ENSBTAP00000020753/1-786 GPQPPMSISG DSVYPVEPNC SSTIFKGDLS FLASLQPSSN IHSLPQTSNN ENSP00000342075/1-457 ---------- ---------- ---------- ---------- ---------- bmy_08405T0/1-721 GPQPPTSISG DSVYPGEPNC SSTIFKGDLG FLASLQLSSD IHSLPATSNN ENSTTRP00000005039/1-844 GPQPPVSISG GSVYPGEPNC SSTIFKGDLG FLASLQLSSD IHSLPATSNN 151 200 ENSBTAP00000020753/1-786 SSSSNQRIPL PCPQQDVPYP PQALPCPLQA LPCPLQALPC PPRASSCPPR ENSP00000342075/1-457 ---------- ---------- ---------- ---------- ------RPRR bmy_08405T0/1-721 GSRSNQRAPL PCPQQDVPCP PQALPCPLRA LPCPLRASSC PPRASSCPPR ENSTTRP00000005039/1-844 GSRSNQRAPL PCPQQDVPCP PQALPCPLRA LPCPLRASPC PPRASSCPPR 201 250 ENSBTAP00000020753/1-786 ALSCPSQTMQ YQLQTLSRLP QEELCPPQDM AYPQNVPG-- ---------- ENSP00000342075/1-457 ALS------- ---------- ---------- ---------- ---------- bmy_08405T0/1-721 ALSCPSQTMQ CQLQTLPHLP QEGPCPPQDV PCPQNVPCAQ QNMPSPPQDS ENSTTRP00000005039/1-844 ALSCPSQTMQ CQLQTLPPPP QEGPCPQQNM PS-------- ---------- 251 300 ENSBTAP00000020753/1-786 ---------- ------PQQD SLGPPQDAPA PPQKISYLED VSHLQDV--- ENSP00000342075/1-457 ---------- ---------- ---------- ---------- ---------- bmy_08405T0/1-721 SWQLQHSQSP PQDSLCPPQD SLGLPQDVPG PPQNITYPQD VAHLQDMPQS ENSTTRP00000005039/1-844 ---------- ------PPQD SLGLPQDVPG PPQNITYPQD VAHLKDM--- 301 350 ENSBTAP00000020753/1-786 ---------- ---------- -----PQSLE DMPQTPQG-- ---------- ENSP00000342075/1-457 ---------- ---------- ---------- ---------- ---------- bmy_08405T0/1-721 LGDMPQSPGD MLQSSGDRPQ SSGDVPQSPR DVPQSPADVL QSPADVSQSP ENSTTRP00000005039/1-844 ---------- ---------- -----PQSPG DVPQSPADVL QSP------- 351 400 ENSBTAP00000020753/1-786 -DVPPSPGDA PPSPASVPHS SREVSCLSGD ALRSPGDMSR SLVDMPPTVG ENSP00000342075/1-457 ---------- --------RT SGALP----- ---------- ---------- bmy_08405T0/1-721 ANVPQSPRDT PPSPGSVPHS SGEVPHLSGD VLHSPGDMSC LPEDMPHTLG ENSTTRP00000005039/1-844 -DVPQSPRDT PPSPGSVPHS PGEIPHLS-- ---------- --EDMPHTLR 401 450 ENSBTAP00000020753/1-786 QLAHLPKIRP ASPQNDIQNH DTPMDVSAPS SPSSSPSPQS PEFETSLEKV ENSP00000342075/1-457 ---------- ---------- ---------- ---------- ---------- bmy_08405T0/1-721 DLPHLPKLRP DSPQNDVQNH DTPMDVSAPS SPSCSPXPQS PQFETSLEKV ENSTTRP00000005039/1-844 DLPHLPKLRP DSPQNDVQNH DTPMDVSAPS SPSCSPNPQS ---ETSLEKV 451 500 ENSBTAP00000020753/1-786 PWLSVTENPA RKERSLSEPV NPGCALIQTQ IPQGGLYNRP CLHRLKYFLR ENSP00000342075/1-457 ---------- RRTV------ ---------- ---------- ---------- bmy_08405T0/1-721 PWLSVTETPA RKKISLSEPV NPGSTQVQAR TPQGGLYNRP CLHRLKYFLR ENSTTRP00000005039/1-844 PWLSVTETPA RKEISLSEPV NPRSAQVQAR TPQGGLYNRP CLHRLKYFLR 501 550 ENSBTAP00000020753/1-786 PPVHHLFFQT LIPDKDTREN KGQKLEPIPH RRLRMVTNTI EENFPLGTVQ ENSP00000342075/1-457 ---------- ---------N KGQKLEPIPH RRLRMVTNTI EENFPLGTVQ bmy_08405T0/1-721 PPVHHLFFQT LIPDKDTREN KGQKLEPIPH RRLRMVTNTI EENFPLGTVQ ENSTTRP00000005039/1-844 PPVHHLFFQT LIPDKDTREN KSQKLEPIPH RRLRMVANTI EENFPLGTVQ 551 600 ENSBTAP00000020753/1-786 FLMDFVSPQH YPPREIVAHI IQKILLSGSE TLDVLKEAYM LLMKIQQLHP ENSP00000342075/1-457 FLMDFVSPQH YPPREIVAHI IQKILLSGSE TVDVLKEAYM LLMKIQQLHP bmy_08405T0/1-721 FLMDFVSPQH YPPREIVAHI IQKILLSGSE TVDVLKEAYM LLMKIQQLHP ENSTTRP00000005039/1-844 FLMDFVSPQH YPPREIVAHI IQKILLSGSE TVDVLKEAYM LLMKIQQLHP 601 650 ENSBTAP00000020753/1-786 ANAKTVEWDW KLLAYVMEEE GQNLPGRVFF LRYVVQTLED DFQQILRKQR ENSP00000342075/1-457 ANAKTVEWDW KLLTYVMEEE GQTLPGRVLF LRYVVQTLED DFQQTLRRQR bmy_08405T0/1-721 ANAKMVEWDW KLLTYVMEEE GQNLPGRALF LRYVVQTLED DFQQILRKQR ENSTTRP00000005039/1-844 ANAKTVEWDW KLLTYVMEEE GQNLPGRVLF LRYVVQTLED DFQQILRKQR 651 700 ENSBTAP00000020753/1-786 QHLQQAIAST VLSCDKQPHN VRDVIKWLIR AVTEDRLIQP PNENQTSPGK ENSP00000342075/1-457 QHLQQSIANM VLSCDKQPHN VRDVIKWLVK AVTEDGLTQP PNGNQTSSGT bmy_08405T0/1-721 QHLQQSIAST VLSCDKQPHN VRDVIKWLVK AVTEDRLTQS PKENQTSPGT ENSTTRP00000005039/1-844 QHLQQSIAST VLSCDKQPHN VRDVIKWLVK AVTEDRLTQS PKENQTSPGT 701 750 ENSBTAP00000020753/1-786 GILKTSSSHP SSQPNLTKNA NQLIICQLQR MLSIAVEVDR TPTCSSNKIA ENSP00000342075/1-457 GILKASSSHP SSQPNLTKNT NQLIVCQLQR MLSIAVEVDR TPTCSSNKIA bmy_08405T0/1-721 GILKASSSHP SPQPNLTKNS NQL------- ---------- ---------- ENSTTRP00000005039/1-844 GILKASSSHP SPQPNLTKNT NQLIVCQLQR MLSIAVEVDR TPTCSSNKIA 751 800 ENSBTAP00000020753/1-786 EMMFGFVLDI PERSQREMFF TTMESHLLRC KVLEIIFLHS CETPTRLPLS ENSP00000342075/1-457 EMMFGFVLDI PERSQREMFF TTMESHLLRC KVLEIIFLHS CETPTRLPLS bmy_08405T0/1-721 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005039/1-844 EMMFGFVLDI PERSQREMFF TTMESHLLRC KVLEIIFLHS CETPTRLPLS 801 850 ENSBTAP00000020753/1-786 LAQALYFLNH STSLLKCQSD KTQWQKWDEL VEHLQFLLSS YQHVLRGKEH ENSP00000342075/1-457 LAQALYFLNN STSLLKCQSD KSQWQTWDEL VEHLQFLLSS YQHVLR--EH bmy_08405T0/1-721 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005039/1-844 LAQALYFLNN STSLLKCQSD KTQWQTWDEL VEHLQFLLSS YQHVLR--EH 851 900 ENSBTAP00000020753/1-786 LGTNQV---- ---------- ---------- ---------- ---------- ENSP00000342075/1-457 LRSSVIDRKD LIIKRIKPKP QQGDDITVVD VEKQIEAFRS RLIQMLGEPL bmy_08405T0/1-721 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005039/1-844 LRSSVIDRKD LIIKRIKPKP QQGDDITVVD VEKQIEAFRS RLVQMLGEPL 901 950 ENSBTAP00000020753/1-786 ---------- ---------- ---------- ----- ENSP00000342075/1-457 VPQLQDKVHL LKLLLFYAAD LNPDAEPFQK GWSGS bmy_08405T0/1-721 ---------- ---------- ---------- ----- ENSTTRP00000005039/1-844 VPQLQDKVHL LKLLLFYAAD LNPDADASPQ AWSRP