KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:33 2014 Check: 00 .. Name: ENSP00000340409/1-631 Len: 679 Check: 2227 Weight: 1.00 Name: ENSBTAP00000020758/1-625 Len: 679 Check: 655 Weight: 1.00 Name: ENSTTRP00000008038/1-657 Len: 679 Check: 8342 Weight: 1.00 Name: bmy_13088T0/1-607 Len: 679 Check: 6380 Weight: 1.00 Name: BACU004497/1-625 Len: 679 Check: 9926 Weight: 1.00 // 1 50 ENSP00000340409/1-631 ---------- ---------- ---------- ---------- ------MPRY ENSBTAP00000020758/1-625 ---------- ---------- ---------- ---------- ------MPRH ENSTTRP00000008038/1-657 ---------- ----SVPGTA RDPESRPGPT PSGAGCANLP GLGSRAMPRQ bmy_13088T0/1-607 LVSEQSADCN GGLIGVPGTA RDPESQPGPT PSGAGRANLP GLGSRAMPRH BACU004497/1-625 ---------- ---------- ---------- ---------- ------MPRH 51 100 ENSP00000340409/1-631 GASLRQSCPR SGREQGQDGT AGAPG--LLW MGLVLALALA LALALALSDS ENSBTAP00000020758/1-625 GVSPGQGLPR SGREQASDRS LGAPCLRLLW LG-------- LALALALPNS ENSTTRP00000008038/1-657 GVSYGQGRPR SGREQALDRS SGAPSLRLLW MG-------- LALALALSDS bmy_13088T0/1-607 GVSSGQGRPR SGREQTLDRS LGAPSLRLLW MG-------- LALALA--DS BACU004497/1-625 GVSSGQGRPR SGREQTPDRS LGAPSLRLLW MG-------- LALALALPDS 101 150 ENSP00000340409/1-631 RVLWAPAEAH PLSPQGHPAR LHRIVPRLRD VFGWGNLTCP ICKGLFTAIN ENSBTAP00000020758/1-625 PVLWSPAEAR PLPTQGHPAK FIRIAPQLQE AFGWWNLTCP TCKGLFTAID ENSTTRP00000008038/1-657 QVLWAPAGAH PLPAQGHPAK FIRLALQLRE GFSWWNLTCS ACKGLFTAID bmy_13088T0/1-607 QVLWAPAGAH PLPAQGHPAK FIRLAPQLLE AFSWWNLTCP ACKGLFTAID BACU004497/1-625 QVLWTPAGAH PLPAQGHPAK FIRLAPQLRE AFSWWNLTCP ACKGLFTAID 151 200 ENSP00000340409/1-631 LGLKKEPNVA RVGSVAIKLC NLLKIAPPAV CQSIVHLFED DMVEVWRRSV ENSBTAP00000020758/1-625 FGLRNQASVA WVGSVAIKLC VLLKIAPPAV CQSAVQLFED DMVEVWTRSV ENSTTRP00000008038/1-657 IRLQNEASVA HVGSIAIKIC TLLKIAPPAV CQSAVQLFQD DMVDVWTRSV bmy_13088T0/1-607 IRLRHEASVA QVGSMAIKMC TLLKIAPPAV CQSAVQLFQD DVVEVWTRSV BACU004497/1-625 IRLRHEDSVA RVGSMAIKMC TLLKIAPPAV CQSAVQLFQD DVVEVWTRSV 201 250 ENSP00000340409/1-631 LSPSEACGLL LGSTCGHWDI FSSWNISLPT VPKPPPKPPS PPAPGAPVSR ENSBTAP00000020758/1-625 LSPSEACGLL LGSSCGHWDI FSSWNISLPA VPKPPPQPPK PPAPGSPVSR ENSTTRP00000008038/1-657 LRPSEACGLL LGSSCGHWDI FSSWNVSLPA VPKPSPQPPE PPAPGSPVSR bmy_13088T0/1-607 LSPSEACGLL LGSSCGHWDI FSSWNISLPA VPKPSPQPPV PPAPGSPVSR BACU004497/1-625 LSPSEACGLL LGSSCGHWDI FSSWNISLPA VPKPSPQPPV PPAPGSPVSR 251 300 ENSP00000340409/1-631 ILFLTDLHWD HDYLEGTDPD CADPLCCRRG SGLPPASRPG AGYWGEYSKC ENSBTAP00000020758/1-625 VLFLTDLHWD HDYLEGTDPN CENPLCCRRD SGPPPASQPG AGYWGEYSKC ENSTTRP00000008038/1-657 VLFLTDLHWD QSYLEGTDPN CENPLCCRQD SGPPPASRPG AGYWGEYSKC bmy_13088T0/1-607 VLFLTDLHWD HDYLEGTDPD CENPLCCRQD SGPPPASRPG AGYWGEYSKC BACU004497/1-625 VLFLTDLHWD HDYLEGTDPD CENPLCCRQD SGPPPASRPG AGYWGEYSKC 301 350 ENSP00000340409/1-631 DLPLRTLESL LSGLGPAGPF DMVYWTGDIP AHDVWHQTRQ DQLRALTTVT ENSBTAP00000020758/1-625 DLPLRTLESL LSGLGPAGPF DMVYWTGDIP AHNIWQQSRQ DQLRALTTIT ENSTTRP00000008038/1-657 DLPLRTLESL LSGLGPAGPF DMVYWTGDIP AHNIWQQSRQ DQLRALTTVT bmy_13088T0/1-607 DLPLRTLESL LRGLGPAGPF DMVYWTGDIP AHNIWQQSRQ DQLRALTTVT BACU004497/1-625 DLPLRTLESL LRGLGPAGPF DMVYWTGDIP AHNIWQQSRQ DQLRALTTVT 351 400 ENSP00000340409/1-631 ALVRKFLGPV PVYPAVGNHE STPVNSFPPP FIEGNHSSRW LYEAMAKAWE ENSBTAP00000020758/1-625 ALVKKFLGPV PVYPAVGNHE STPVNGFPPP FIKGNQSSHW LYEAMAEAWE ENSTTRP00000008038/1-657 DLVKKFLGPV PVYPAVGNHE TTPVNGFPPP FIEGNQSSHW LYEAMAKAWE bmy_13088T0/1-607 DLVRKFLGPV PVYPAVGNHE STPVNGFPPP FIEGNQSSHW LYEAMAKAWE BACU004497/1-625 DLVRKFLGPV PVYPAVGNHE STPVNGFPPP FIEGNQSSHW LYEAMAKAWE 401 450 ENSP00000340409/1-631 PWLPAEALRT LRIGGFYALS PYPGLRLISL NMNFCSRENF WLLINSTDPA ENSBTAP00000020758/1-625 PWLPAEALRT LRIGGFYALS PRPGLRLISL NMNFCSRENF WLLINSTDPA ENSTTRP00000008038/1-657 PWLPAEALRT LRIGGFYALS PRPGLRLISL NMNFCSRENF WLLINSTDPA bmy_13088T0/1-607 PWLPAEALRT LR-----ALP EELELELLP- ---------- ---------- BACU004497/1-625 PWLPAEALRT LRIGGYYALS PRPGLRLISL NMNFCSRENF WLLINSTDPA 451 500 ENSP00000340409/1-631 GQLQWLVGEL QAAEDRGDKV HIIGHIPPGH CLKSWSWNYY RIVARYENTL ENSBTAP00000020758/1-625 GQLQWLVGEL QAAEDRGDKV HIIGHIPPGH CLKSWSWNYY RIVERYENTL ENSTTRP00000008038/1-657 GQLQWLVGEL QAAEDRGDKV HIIGHIPPGH CLKSWSWNYY RIVERYENTL bmy_13088T0/1-607 ---------- ----NRGE-- ---------- CLPA------ ----RYENTL BACU004497/1-625 GQLQWLVGEL QASEDRGDKV HIIGHIPPGH CLKSWSWNYY RIVERYENTL 501 550 ENSP00000340409/1-631 AAQFFGHTHV DEFEVFYDEE TLSRPLAVAF LAPSATTYIG LNPGYRVYQI ENSBTAP00000020758/1-625 AGQFFGHTHV DEFEVFYDEE TLSRPLSVAF LAPSATTYIG LNPGYRVYQI ENSTTRP00000008038/1-657 AGQFFGHTHV DEFEIFYDEE TLSRPLSVAF LAPSATTYIS LNPGYRVYQI bmy_13088T0/1-607 AGQFFGHTHV DEFEVFYDEE TLSRPLSVAF LAPSATTYIS LNPGYRVYQI BACU004497/1-625 AGQFFGHTHV DEFEVFYDEE TLSRPLSVAF LAPSATTYIS LNPGYRVYQI 551 600 ENSP00000340409/1-631 DGNYSGSSHV VLDHETYILN LTQANIPGAI PHWQLLYRAR ETYGLPNTLP ENSBTAP00000020758/1-625 DGNYSGSSHV VLDHETYIMN LTEANEPGAT PHWYLLYRAR ETYGLPNALP ENSTTRP00000008038/1-657 DGNYSGSSHL VLDHETYILN LTQANEPGAT PHWQLLYRAR ETYGLPNVLP bmy_13088T0/1-607 DGNYSGSSHL VLDHETYILN LTQANQPGAT PHWKLLYRAR ETYGLPNVLP BACU004497/1-625 DGNYSGSSHL VLDHETYILN LTQANQPGAA PHWKLLYRAR ETYGLPNVLP 601 650 ENSP00000340409/1-631 TAWHNLVYRM RGDMQLFQTF WFLYHKGHPP SEPCGTPCRL ATLCAQLSAR ENSBTAP00000020758/1-625 TAWHDLVYRM RKDTQLFQTF WFLYHKGHPP SEPCGTPCRL ATLCAQLSAR ENSTTRP00000008038/1-657 AAWHDLVYRM RSDTQLFQTF WFLYHKGHPP SEPCGTPCRL ATLCAQLSAR bmy_13088T0/1-607 AAWHDLVYRM RSDTQLFQTF WFLYHKGHPP SEPCGTPCRL ATLCAQLSAR BACU004497/1-625 AAWHDLVYRM RSDTQLFQTF WFLYHKGHPP SEPCGTPCRL ATLCAQLSAR 651 700 ENSP00000340409/1-631 ADSPALCRHL MPDGSLPEAQ SLWPRPLFC ENSBTAP00000020758/1-625 SDSPALCRHL VPDASLPDVQ SLWSMPLLC ENSTTRP00000008038/1-657 SDSPALCHHL MPDANLPPGQ SLWPRPPLC bmy_13088T0/1-607 SDSPALCRHL APDANLPPVQ SLRPRPPLC BACU004497/1-625 SDSPALCRHL APDANLPPVQ SLRPRPPLC