KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:33 2014 Check: 00 .. Name: ENSP00000368538/1-277 Len: 329 Check: 5427 Weight: 1.00 Name: ENSBTAP00000020764/1-278 Len: 329 Check: 931 Weight: 1.00 Name: bmy_10017T0/1-303 Len: 329 Check: 5198 Weight: 1.00 Name: BACU001184/1-282 Len: 329 Check: 7532 Weight: 1.00 Name: ENSTTRP00000016129/1-211 Len: 329 Check: 2294 Weight: 1.00 // 1 50 ENSP00000368538/1-277 MCVGARRLGR GPCAALLLLG LGLSTVTGLH CVGDTYPSND RCCHECRPGN ENSBTAP00000020764/1-278 MCVGTQP-PR APGSALLLLG LVLGAAAQPH CTGDTYPSGN RCCKECPPGY bmy_10017T0/1-303 MRVGAQP-PR APGLAFLLLG LALGAAAQLS CVGDTYPSGS RCCKECQPGY BACU001184/1-282 MRVGAQP-PR APGSAFLLLG LALGAAAQIS CVGDTYPSGS RCCKECQPGY ENSTTRP00000016129/1-211 MRVGAQP-PR APGSAFLLLG LALGAAAQLN CVGDTYPSGS RCCKECQPGY 51 100 ENSP00000368538/1-277 GMVSRCSRSQ NTVCRPCGPG FYNDVVSSKP CKPCTWCNLR ---------- ENSBTAP00000020764/1-278 GMESRCNHNQ DTVCSPCKPG YYNEAVNYEP CKPCTQCSQR ---------- bmy_10017T0/1-303 GMESRCTHAR DTVCRPCEPG FYNEAVNYEA CKPCTQCNQR EHRQAPRPRW BACU001184/1-282 GMESRCTHAR DTVCRPCEPG FYNEAVNYEA CKPCTQCNQR ---------- ENSTTRP00000016129/1-211 GMESRCIHAR DTVCRPCEPG FYNEAVNYEA CKPCTQCNQR ---------- 101 150 ENSP00000368538/1-277 ---------- -----SGSER KQLCTATQDT VCRCRAGTQP LDS--YKPGV ENSBTAP00000020764/1-278 ---------- -----SGSEP KQRCTPTRDT VCGCRPGSQP QDSYGYKRGV bmy_10017T0/1-303 RPRHTGPRSK PQTTPGGSEP KQRCTPTRDT VCGCRPGTQP QDGYGYKRGV BACU001184/1-282 ---------- -----SGSEP KQRCTPTRDT VCGCRPGTQP QDGYGYKRGV ENSTTRP00000016129/1-211 ---------- -----SGSEP KQRCTPTRDT VCGCRPGTQP QDGYGYKRGV 151 200 ENSP00000368538/1-277 DCAPCPPGHF SPGDNQACKP WTNCTLAGKH TLQPASNSSD AICEDRDPPA ENSBTAP00000020764/1-278 DCAPCPPGHF SPGNDQACQP WTNCTLLGKR TLRAANSSSD AICEDRSPPA bmy_10017T0/1-303 DCAPCPPGHF SLGNDQACQP WTNCTSLGKR TLRAASNSSD AVCEDRSPRL BACU001184/1-282 DCAPCPPGHF SLGNDQACQP WTNCTSLGKR TLRAASNSSD AVCEDRSPRL ENSTTRP00000016129/1-211 DCAPCPPGHF SPGNDQACQP WTNCTSLGKR TLQAASNSSD AVCEDRSPRL 201 250 ENSP00000368538/1-277 TQPQETQGPP ARPITVQPTE AWPRTSQGPS TRPVEVP--- ---------- ENSBTAP00000020764/1-278 TPPWETQGPP VQSTTAKPTT SWSKASQGSS MPHTEPP--- ---------- bmy_10017T0/1-303 TPAWETQGPA ARSTPAQPTT TWPRASQGPS TPHAEPP--- ---------- BACU001184/1-282 TPAWETQGPA ARSTPAQPTT TWPRASQGPS TPXXXXXXXX XXXXXXXXXG ENSTTRP00000016129/1-211 TPAWETQGPA ARSTPAQPTT TWPRPSQGPS RPTQASQ--- ---------- 251 300 ENSP00000368538/1-277 GGRAVAAILG LGLVLGLLGP LAILLALYLL RRDQ------ ------RLPP ENSBTAP00000020764/1-278 KAPELSAVLG LGLGLGLLAP VAAMLALLLH HRAW------ ------RLLT bmy_10017T0/1-303 KGPELAAVLG LGLGLGLLAP VAAALALLLH HRAW------ ------RLTP BACU001184/1-282 LGAALLRWAP SLVDPTPAGP ASPQAPSWLL SWAWAWAWAC SPPWLPRWPC ENSTTRP00000016129/1-211 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000368538/1-277 DAHKPPGGGS FRTPIQEEQA DAHSTLAKI ENSBTAP00000020764/1-278 NTPKPPGGNS FRTPIQEEHT DANSSLAKI bmy_10017T0/1-303 NAPKPPGANS FRTPIQEEHA DANSSLAKI BACU001184/1-282 SCTTGPGG-- ---------- --------- ENSTTRP00000016129/1-211 ---------- ---------- ---------