KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:34 2014 Check: 00 .. Name: ENSP00000314976/1-553 Len: 587 Check: 6944 Weight: 1.00 Name: ENSBTAP00000020767/1-584 Len: 587 Check: 5312 Weight: 1.00 Name: ENSTTRP00000002394/1-551 Len: 587 Check: 149 Weight: 1.00 Name: bmy_08150T0/1-541 Len: 587 Check: 1353 Weight: 1.00 Name: BACU014335/1-522 Len: 587 Check: 2960 Weight: 1.00 // 1 50 ENSP00000314976/1-553 ---------- ---------- ------MRAP GRPA------ --LRPLPLPP ENSBTAP00000020767/1-584 RSQRPRPEGE SHADGCLQRC DPAPAPMCAP GPSARAAARG APAPGLPAL- ENSTTRP00000002394/1-551 ---------- ---------- ------MCAP RPPA------ --RHPLPALP bmy_08150T0/1-541 ---------- ---------- ---------- ---------- --MLGLPFSL BACU014335/1-522 ---------- ---------- ------MCAP RPTAKAAAIR APAPGLPALP 51 100 ENSP00000314976/1-553 LLLLLLAAPW GRAVPCVSGG LPKPANITFL SINMKNVLQW TPPEGLQGVK ENSBTAP00000020767/1-584 LFLLLVAAPT GRAVPCVSGD LPKPTNVAFI SINMKNILQW NPPEGLQGME ENSTTRP00000002394/1-551 LLLLLVAAPT GRAVSCVSGG LPKPTNITFL SINMKNILQW NPPQGLQGVE bmy_08150T0/1-541 LRPQFLSTPF --SVPCVSGG LPKPTNITFL SINMKNILQW NPPQGLQGVE BACU014335/1-522 LLLLLVAART GRPVPCVSGG LPKPTNITFL SINMKNILQW NPPQGLQGVE 101 150 ENSP00000314976/1-553 VTYTVQYFIY GQKKWLNKSE CRNINRTYCD LSAETSDYEH QYYAKVKAIW ENSBTAP00000020767/1-584 VSYTVQYFIY GQKKWLNKSE CRNISRTYCD LSAETSDYEH QYYAKVKAMW ENSTTRP00000002394/1-551 VTYSVQYFIY GQKKWLNKSE CRNISRTYCD LSAETSDYER QYYAKAKAIW bmy_08150T0/1-541 VTYSVQYFIY GHKKWLNKSE CRNISRTYCD LSAETSDYEH QYYAKVKAIW BACU014335/1-522 VTYSVQYFIY GQKKWLNKSE CRNISRTYCD LSAETSDYEH QYYAKVKAIW 151 200 ENSP00000314976/1-553 GTKCSKWAES GRFYPFLETQ IGPPEVALTT DEKSISVVLT APEKWKRNPE ENSBTAP00000020767/1-584 GTNCSKWAET GRFYPFLETQ IGPPEVALTT DEKSISIVLT APKKWKKNPE ENSTTRP00000002394/1-551 GTNCSKWAET GRFYPLSETQ IGPPEVALTT DEKSISIVLT APKKWKKNPE bmy_08150T0/1-541 GTNSSKWAET GRFYPFLETQ IGPPEVALTT DEKSISIVLT APKKWKKNPE BACU014335/1-522 GTNCSKWAET GRFYPFLETQ IGPPEVALTT DEKSISIVLT APKKWKKNPE 201 250 ENSP00000314976/1-553 DLPVSMQQIY SNLKYNVSVL NTKSNRTWSQ CVTNHTLVLT WLEPNTLYCV ENSBTAP00000020767/1-584 ESSISMQQIY SNLKYNVSIY NTKSNRTWSQ CVTNHTLVFS WLEPGTLYCV ENSTTRP00000002394/1-551 ESSISLEQIY SNLKYNVSIH NTKSNRTWSQ CVTNRTLVFG WLEPDTLYCV bmy_08150T0/1-541 ESSISLEQIY SDLKYNVSIY NTKSNRTWSQ CVTNRTLVFS WLEPDTLYCV BACU014335/1-522 ESSISLEQIY SNLKYNVSIY NTKSNRTWSQ CVTNRTLVFS WLEPDTLYCV 251 300 ENSP00000314976/1-553 HVESFVPGPP RRAQPSEKQC ARTLKDQSSE FKAKIIFWYV LPVSITVFLF ENSBTAP00000020767/1-584 LVESFVPGPP RLTHPSERQC VSTLEDQTTA LEVKIILWYV LPISVTVFIF ENSTTRP00000002394/1-551 LVESFVPGPP RLVQPSEKQC VSTLKDQTST LKVKIIFCYV LPVSVTVFIF bmy_08150T0/1-541 LVESFVPGPP RLAQPSEKQC VSTLKDQTST LKVKIIFCYV LPISVTVFIF BACU014335/1-522 LVESFVPGPP RLAQPSEKRC VSTLKDQTST LKVKIILCYV LPISVTVFIF 301 350 ENSP00000314976/1-553 SVMGYSIYRY IHVGKEKHPA NLILIYGNEF DKRFFVPAEK IVINFITLNI ENSBTAP00000020767/1-584 SVMGYSMYRY IHVGKEKHPA NLVLIYGNEF DKRFFVPTEK IVINFITLNI ENSTTRP00000002394/1-551 SVMCYSMYRY TYVGKEKHPA NLXXXXXNEF DKRVFVPAEK VVINFITLNI bmy_08150T0/1-541 SVMCYSMYRY THVSKEKHPA NLVLIYGNEF DKRVFVPAEK IVINFITLSI BACU014335/1-522 SVMCYSMYRY THVSKEKHPA NL-------- ---------- ---------- 351 400 ENSP00000314976/1-553 SDDSKISHQD MSLLGKSSDV SSLNDPQPSG NLRPPQEEEE VKHLGYASHL ENSBTAP00000020767/1-584 LEDSKTSSKD ISVMEKSSEA SDLNE--PIE DQEPHWEDVG AEHLGYVSHA ENSTTRP00000002394/1-551 LEDSKISHKD ISVMEKSNDA SDLNE--PRK DQEPHQEEVE VKHLGYASHV bmy_08150T0/1-541 LEDSKTSHKD ISVMEKSNDA SDLNE--PSE DREPHQEEVE MKHLGYASHV BACU014335/1-522 ---------D ISVMEKSNDA SDLNE--PSE DREPPQEEVE VKHVGYASHV 401 450 ENSP00000314976/1-553 MEIFCDSEEN TEGTSLTQQE SLSRTIPPDK TVIEYEYDVR TTDICAGPEE ENSBTAP00000020767/1-584 VDIVCDFEKS SKGTSLTQQE PPSRTTPMDK TVIEYEYDVR SSDISVGPRG ENSTTRP00000002394/1-551 VDIVYDPEKS TQGTSLSQQE PPSRTMPTDK TVIEYECDVR TSDISVGPGD bmy_08150T0/1-541 VDIVYDSEKS TKGTSLTQQE PPSRTMATDE TVIEYECDIR TSDIFVGPGD BACU014335/1-522 VDIVYDSEKS TRGTSLTQQE PPSRTMATDK AVIEYECDIR TSDISVGPGA 451 500 ENSP00000314976/1-553 QELSLQEEVS TQGTLLESQA ALAVLGPQTL QYSYTPQLQD LDPLAQEHTD ENSBTAP00000020767/1-584 QEFNLQEEVS LQGKIFEQQA PLADLGPQTL LCSYTPQLRD LDHLRQGHVD ENSTTRP00000002394/1-551 QEFNLQEEVS LQGKLSEQQA TLADLGPQTL PYSYTPQLRD LDHLPQGHVD bmy_08150T0/1-541 QEFNLQEEVS LQGRLSEQQA TLADLGPQTL PYSYTPQLRD LDHLLQGHVD BACU014335/1-522 QEFNLQEEVS LQGRLSEQQA TLADLGPQTL PYSYTPQLRD LDHPLQGHVD 501 550 ENSP00000314976/1-553 SEEGPEEEPS TTLVDWDPQT GRLCIPSLSS FDQDSEGCEP SEGDGLGEEG ENSBTAP00000020767/1-584 TEEGPEEEPS TTLVDWDPQT GKLCIPSLPS FQHDPEGCGH PESEGLGEEG ENSTTRP00000002394/1-551 TEEGPEAEPS TTLVDWDPRT GRLCIPSLSS FEHDSERCKH PESEGLEEEG bmy_08150T0/1-541 TEEGPEAEPS TTLVDWDPQT GRLCIPSLSS FEHDSERFKH PESEGLKEEG BACU014335/1-522 TEEGPEAEPS TTLVDWDPQT GRLCIPSLSS FEHDSERCKH PESEGLKEEG 551 600 ENSP00000314976/1-553 LLSRLYEEPA PDRPPGENET YLMQFMEEWG LYVQMEN ENSBTAP00000020767/1-584 LLSRLYQDQA PDKAPEENEA YLMQFMEEWG LYVQMED ENSTTRP00000002394/1-551 LLSRLYQDRA PDKTLEEHEA YLMQFMEEWG LYVQMED bmy_08150T0/1-541 LLSRLYQDQA PDKTLEEHEA YLMQFMEEWG LYVQMGD BACU014335/1-522 LLSRLYQDQA PDKTLEEHEA YLMQFMEEWG LYVQMGD