KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:35 2014 Check: 00 .. Name: bmy_06488T0/1-444 Len: 859 Check: 541 Weight: 1.00 Name: ENSP00000359073/1-847 Len: 859 Check: 5554 Weight: 1.00 Name: ENSBTAP00000020771/1-847 Len: 859 Check: 5314 Weight: 1.00 Name: BACU002760/1-843 Len: 859 Check: 6579 Weight: 1.00 Name: ENSTTRP00000009343/1-846 Len: 859 Check: 1323 Weight: 1.00 // 1 50 bmy_06488T0/1-444 MSRVLWGQKE PRLEEGD--- -GQRRLWVGT SLAESRMNVV RRLEGTEDEG ENSP00000359073/1-847 --MEPWKQCA QWLIHCKVLP TNHRVTWDSA QVFD------ --LAQTLRDG ENSBTAP00000020771/1-847 --MEPWKQCA QWLIHCKVLP ANHRVTWDSA QVFD------ --LAQTLRDG BACU002760/1-843 --MEPWKQCA LWLIHCKVLP ANHRVTWDSA QVFD------ --LAQTLRDG ENSTTRP00000009343/1-846 --MEPWKQCA LWLIHCKVLP ANHRVTWDSA QVFD------ --LAQTLRDG 51 100 bmy_06488T0/1-444 FLLGSIPEHS GWAAVELAPL RCNGRPRWS- -------RVL LPSSAST--- ENSP00000359073/1-847 VLLCQLLNNL RAHSINLKEI --NLRPQMSQ FLCLKNIRTF LTACCETFGM ENSBTAP00000020771/1-847 VMLCQLLNNL RAHSINLKEI --NLRPQMSQ FLCLKNIRTF LTACCETFGM BACU002760/1-843 VLLCQLLNNL RAHSINLKEI --NLRPQMSQ FLCLKNIRTF LTACCETFGM ENSTTRP00000009343/1-846 VLLCQLLNNL RAHSINLKEI --NLRPQMSQ FLCLKNIRTF LTACCETFGM 101 150 bmy_06488T0/1-444 ---------- ---------V IETLSRLSRT PVALATG--- ---------- ENSP00000359073/1-847 RKSELFEAFD LFDVRDFGKV IETLSRLSRT PIALATGIRP FPTEESINDE ENSBTAP00000020771/1-847 RKSELFEAFD LFDVRDFGKV IETLSRLSRT PIALATGIRP FPTEESINDD BACU002760/1-843 RKSELFEAFD LFDVRDFGKV IETLSRLSRT PVALATGIRP FPTEESVNDD ENSTTRP00000009343/1-846 RKSELFEAFD LFDVRDFGKV IETLSRLSRT PVALATGIRP FPTEESVNDD 151 200 bmy_06488T0/1-444 ---------I SETRVEDEEG LYDCVYGEDE GGEVYEDLMK AEEAHQPKCP ENSP00000359073/1-847 DIYKGLPDLI DETLVEDEED LYDCVYGEDE GGEVYEDLMK AEEAHQPKCP ENSBTAP00000020771/1-847 DIYKGLPDLI DETHVEDEDG LYDCVYGEDE GGEVYEDLMK AEEAQQSKCP BACU002760/1-843 DIYKGLPDLI DETRVEDEEG LYDCVYGEDE GGEVYEDLMK AEE----KCP ENSTTRP00000009343/1-846 DIYKSLPDLI DETRVEDEEG LYDCVYGEDE GGEVYEDLMK AEEVHQPKCP 201 250 bmy_06488T0/1-444 ENDIRSCCLA EIKQTEEKYT ETLESIEKYF MAPLKRFLTA AEFDSVFINI ENSP00000359073/1-847 ENDIRSCCLA EIKQTEEKYT ETLESIEKYF MAPLKRFLTA AEFDSVFINI ENSBTAP00000020771/1-847 ENDIRSCCLA EIKQTEEKYT ETLESIEKYF MAPLKRFLTA AEFDSVFINI BACU002760/1-843 ENDIRSCCLA EIKQTEEKYT ETLESIEKYF MAPLKRFLTA AEFDSVFINI ENSTTRP00000009343/1-846 ENDIRSCCLA EIKQTEEKYT ETLESIEKYF MAPLKRFLTA AEFDSVFINI 251 300 bmy_06488T0/1-444 PELVKVHRNL MQEIHDSIVN KNDQNLYQVF INYKERLVIY GQYCSGVESA ENSP00000359073/1-847 PELVKLHRNL MQEIHDSIVN KNDQNLYQVF INYKERLVIY GQYCSGVESA ENSBTAP00000020771/1-847 PELVKVHRNL MQEIHDSIVN KNDQNLYQVF INYKERLVIY GQYCSGVESA BACU002760/1-843 PELVKVHRNL MQEIHDSIVN KNDQNLYQVF INYKERLVIY GQYCSGVESA ENSTTRP00000009343/1-846 PELVKVHRNL MQEIHDSIVN KNDQNLYQVF INYKERLVIY GQYCSGVELA 301 350 bmy_06488T0/1-444 ISSLDYISKT KEDVKLKLEE CSKRANNGKF TLRDLLVVPM QR-------- ENSP00000359073/1-847 ISSLDYISKT KEDVKLKLEE CSKRANNGKF TLRDLLVVPM QRVLKYHLLL ENSBTAP00000020771/1-847 ISSLDYISKT KEDVRLKLEE CSKRANNGKF TLRDLLVVPM QRVLKYHLLL BACU002760/1-843 ISSLDYISKT KEDVKLKLEE CSKRANNGKF TLRDLLVVPM QRVLKYHLLL ENSTTRP00000009343/1-846 ISSLDYISKT KEDVKLKLEE CSKRANNGKF TLRDLLVVPM QRVLKYHLLL 351 400 bmy_06488T0/1-444 -ELVKHTTDP VEKANLKLAL DAMKDLAQYV NEVKRDNETL REIKQFQLSI ENSP00000359073/1-847 QELVKHTTDP TEKANLKLAL DAMKDLAQYV NEVKRDNETL REIKQFQLSI ENSBTAP00000020771/1-847 QELVKHTTDP MEKANLKLAL DAMKDLAQYV NEVKRDNETL REIKQFQLSI BACU002760/1-843 QELVKHTTDP VEKANLKLAL DAMKDLAQYV NEVKRDNETL REIKQFQLSI ENSTTRP00000009343/1-846 -ELVKHTTDP MEKANLKLAL DAMKDLAQYV NEVKRDNETL REIKQFQLSI 401 450 bmy_06488T0/1-444 ENLNQPVLLF GRPQGDGEIR ITTLDKHTKQ ERHIFLFDLA VIVCKRKGDN ENSP00000359073/1-847 ENLNQPVLLF GRPQGDGEIR ITTLDKHTKQ ERHIFLFDLA VIVCKRKGDN ENSBTAP00000020771/1-847 ENLNQPVLLF GRPQGDGEIR ITTLDKHTKQ ERHIFLFDLA VIVCKRKGDN BACU002760/1-843 ENLNQPVLLF GRPQGDGEIR ITTLDKHTKQ ERHIFLFDLA VIVCKRKGDN ENSTTRP00000009343/1-846 ENLNQPVLLF GRPQGDGEIR ITTLDKHTKQ ERHIFLFDLA VIVCKRKGDN 451 500 bmy_06488T0/1-444 YEMKEIIDLQ QYKIANNPTT DKENKKW--- ---------- ---------- ENSP00000359073/1-847 YEMKEIIDLQ QYKIANNPTT DKENKKWSYG FYLIHTQGQN GLEFYCKTKD ENSBTAP00000020771/1-847 YEMKEIIDLQ QYKIANNPTT DKENKKWSYG FYLIHIQGQN GLEFYCKTKD BACU002760/1-843 YEMKEIIDLQ QYKIANNPTT DKENKKWSYG FYLIHIQGQN GLEFYCKTKD ENSTTRP00000009343/1-846 YEMKEIIDLQ QYKIANNPTT DKENKKWSYG FYLIHIQGQN GLEFYCKTKD 501 550 bmy_06488T0/1-444 ---------- ---------- ---------- ---------- ---------- ENSP00000359073/1-847 LKKKWLEQFE MALSNIRPDY ADSNFHDFKM HTFTRVTSCK VCQMLLRGTF ENSBTAP00000020771/1-847 LKKKWLEQFE MALSNIRPDY ADSNFHEFKM HTFTRVTSCR VCQMLLRGTF BACU002760/1-843 LKKKWLEQFE MALSNIRPDY ADSNFHEFKM HTFNRVTSCK VCQMLLRGTF ENSTTRP00000009343/1-846 LKKKWLEQFE MALSNIRPDY ADSNFHEFKM HTFNRVTSCK VCQMLLRGTF 551 600 bmy_06488T0/1-444 ---------- ---------- ---------- ---------- ------KLNK ENSP00000359073/1-847 YQGYLCFKCG ARAHKECLGR VDNCGRVNSG EQGTLKLPEK RTNGLRRTPK ENSBTAP00000020771/1-847 FQGYLCVKCG ARAHKECLGR VDNCSRVNSA EQGTLKPSEK RTNGLRRTHR BACU002760/1-843 YQGYLCVKCG ARAHKECLGR VDNCGRVNSA EQGTLKPSEK RTNGLRRTPR ENSTTRP00000009343/1-846 YQGYLCVKCG ARAHKECLGR VDNCGRVNSA EQGTLKPSEK RTNGLRRTPK 601 650 bmy_06488T0/1-444 ESSTDLPMKM LV-------- --MQESPASS FDLEDQ---- ---------- ENSP00000359073/1-847 QVDPGLPKMQ VIRNYSGTPP PALHEGPPLQ LQAGDTVELL KGDAHSLFWQ ENSBTAP00000020771/1-847 PVDPGLPKMQ AIRSYSGTPP PALHEGPPLH IQAGDTVELL RGDAHSLFWQ BACU002760/1-843 QVDPGLPKMQ AIRNYTGMPA PALHEGPPLH IQAGDTVELL RGDAHSLFWQ ENSTTRP00000009343/1-846 QVDPGLPKMQ AIRNYTGMPA PALHEGPPLH IQAGDTVELL RGDAHSLFWQ 651 700 bmy_06488T0/1-444 ---------- ---------C P--------- ---------- ---------- ENSP00000359073/1-847 GRNLASGEVG FFPSDAVKPC PCVPKPVDYS CQPWYAGAME RLQAETELIN ENSBTAP00000020771/1-847 GRNLTSGEVG FFPSDAVKPC PCVPKPVDYS CQPWYAGAME RLQAETELIN BACU002760/1-843 GRNLTSGEVG FFPSDAVKPC PCVPKPVDYS CQPWYAGAME RLQAETELIN ENSTTRP00000009343/1-846 GRNLTSGEVG FFPSDAVKPC PCVPKPVDYS CQPWYAGAME RLQAETELIN 701 750 bmy_06488T0/1-444 ---------- ---------- ---------- ---------- ---------- ENSP00000359073/1-847 RVNSTYLVRH RTKESGEYAI SIKYNNEAKH IKILTRDGFF HIAENRKFKS ENSBTAP00000020771/1-847 RVNSTYLVRH RTRESGEYAI SIKYNNEAKH IKILTRDGFF HIAENRKFKS BACU002760/1-843 RVNSTYLVRH RTKESGEYAI SIKYNNEAKH IKILTRDGFF HIAENRKFKS ENSTTRP00000009343/1-846 RVNSTYLVRH RTKESGEYAI SIKYNNEAKH IKILTRDGFF HIAENRKFKS 751 800 bmy_06488T0/1-444 ---------- ---------- ---------- ---------- ---------- ENSP00000359073/1-847 LMELVEYYKH HSLKEGFRTL DTTLQFPYKE PEHSAGQRGN RAGNSLLSPK ENSBTAP00000020771/1-847 LMELVEYYKH HSLKEGFRTL DTTLQFPYKE PEHSTGQRGN RAGISFLSPK BACU002760/1-843 LMELVEYYKH HSLKEGFRTL DTTLQFPYKE PEHSTGQRGN RAGNSLLSPK ENSTTRP00000009343/1-846 LMELVEYYKH HSLKEGFRTL DTTLQFPYKE PEHSSGQRGN RAGNSLLSPK 801 850 bmy_06488T0/1-444 ---------- ---------- ---------- ---------- ---------- ENSP00000359073/1-847 VLGIAIARYD FCARDMRELS LLKGDVVKIY TKMSANGWWR GEVNGRVGWF ENSBTAP00000020771/1-847 VLGIAIARYD FCARDMRELS LLKGDVVKIY TKMSANGWWR GEVNGRVGWF BACU002760/1-843 VLGIAIARYD FCARDMRELS LLKGDVVKIY TKMSANGWWR GEVNGRVGWF ENSTTRP00000009343/1-846 VLGIAIARYD FCARDMRELS LLKGDVVKIY TKMSANGWWR GEVNGRVGWF 851 900 bmy_06488T0/1-444 --------- ENSP00000359073/1-847 PSTYVEEDE ENSBTAP00000020771/1-847 PSTYVEEDE BACU002760/1-843 PSTYVEEDE ENSTTRP00000009343/1-846 PSTYVEEDE