KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:12:36 2014 Check: 00 .. Name: ENSTTRP00000009873/1-1241 Len: 1596 Check: 6055 Weight: 1.00 Name: bmy_21320T0/1-820 Len: 1596 Check: 6506 Weight: 1.00 Name: BACU019714/1-1189 Len: 1596 Check: 8762 Weight: 1.00 Name: ENSBTAP00000020785/1-1558 Len: 1596 Check: 2626 Weight: 1.00 // 1 50 ENSTTRP00000009873/1-1241 QAPRSAAPGA WLPGAELLEV VPSSLRGLLE HLLPVAPRMG LQGMFCFPLG bmy_21320T0/1-820 ---------- ---------- ---------- --------MG LQGMFCFPLG BACU019714/1-1189 ---------- ---------- ------GLLE HLLPMTPRMG LQEMFCFPLG ENSBTAP00000020785/1-1558 ---------- ---------- ---------- --------MG LQGRFCFPLV 51 100 ENSTTRP00000009873/1-1241 LLFGSVLLVA SAPSALESSG CSEKEQQVTV SHTYKIDVPK SALVQVEADP bmy_21320T0/1-820 LLFGSVLLVA SAPATLESSG CSEKEQQVTV SHTYKIDVPK SALVQVEADP BACU019714/1-1189 LLFGSVLLVA SAPATLESSG CSEKEQQVTV SHTYKIDVPK SALVQVGADP ENSBTAP00000020785/1-1558 LLLGSVLLVT SAPATLESSG CSEKEQQVTV SHTYKIDVPK SALVQVEADP 101 150 ENSTTRP00000009873/1-1241 QPLRDDGASL LAPGEAEEQN IIFRHNIRLQ TPQKDCELAG SIQDLLARVK bmy_21320T0/1-820 QPLRDDGASL LAPGEVEEQN IIFRHNIRLQ TPQKDCELAG SIQDLLARVE BACU019714/1-1189 QPLRDDGGSL LAPGEAEEQN IIFRHNIRLQ TPQKDCELAG SIQDLLARVK ENSBTAP00000020785/1-1558 QPLRGDGTSL LAPEETEEQN IVFRHNIRLQ TPQKDCELAG SVRDLLARVK 151 200 ENSTTRP00000009873/1-1241 KLEEEMAEVK ERCSAQRCCP GAAGLSHHCS GHGTFSPDTC SCHCEQGW-- bmy_21320T0/1-820 KLEEEMVEVK E--------- -----SRHCS GHGTFSPDTC SCHCEQGWEG BACU019714/1-1189 KLEEEMAEVK ERCSAQLCCP GAAGLSRHCS GHGTFSPDTC SCHWELGWE- ENSBTAP00000020785/1-1558 KLEEEMAEVK ERCSAQRCCP GAAGLSRHCS GHGTFSLDTC SCHCEHGWEG 201 250 ENSTTRP00000009873/1-1241 --CQRPACPG ACSGHGRCVD SRCLCEQPYV GADCAYPACA ENCSGHGVCV bmy_21320T0/1-820 ADCERPACPG ACSGHGRCVD GRCLCEQPYV GADCAYPACA ENCSGHGVCV BACU019714/1-1189 ---------- ---------- ---------- GXDCAYPACA ENCSGHGVCV ENSBTAP00000020785/1-1558 ADCERLACPG ACSGHGRCVD GRCVCEPPYV GADCAYPACP ENCSGHGECV 251 300 ENSTTRP00000009873/1-1241 RGVCQCHEDF TSEDCSERRC PGDCSGQGFC DAGECYCEEG FTGLDCAQVV bmy_21320T0/1-820 RGVCQCHEDF TSEDCSERRC PGDCSGHGFC DAGECYCEEG FTGLDCAQVV BACU019714/1-1189 RGVCQCHEDF TSEDCSERRC PGDCSGHGFC DTGECYCEEG FTGLDCAQVV ENSBTAP00000020785/1-1558 RGVCQCHEDF ISEDCSERRC PGDCSGHGFC DTGECYCEEG FTGLDCAQVV 301 350 ENSTTRP00000009873/1-1241 APQGLQLLKS TEDSLLVSWE PSSQVDHYLL SYYPLGKELS VKQIQVPKEQ bmy_21320T0/1-820 APQGLQLLKS TEDSLLVSWE PSSQVDHYLL SYYPLGKEFS ITQIQVPKEQ BACU019714/1-1189 SPQGLQLLRS TEDSLLVSWE PFSQVDHYLL SYYPLGKELS IKQIQVPKEQ ENSBTAP00000020785/1-1558 APQGLQLLKS TEDSLLVSWE PSSQVDHYLL SYYPLGKELS VKQIKVPKEQ 351 400 ENSTTRP00000009873/1-1241 HSYEILGLLP GTKYIVTLRN VKKEISSSPQ HLLATTDLAV LGTAWVTDET bmy_21320T0/1-820 HSYEILGLLP GTKYIVTLRN ---------- ---------- ---------T BACU019714/1-1189 HSYEILGLLP GTKYIVTLRN VMKEISSSPQ HLLATTDLAV LGTAWVTDET ENSBTAP00000020785/1-1558 HRYEILGLLP GTKYIVTLRN VKKDISSSPQ HLLATTDLAV PGTAWVTDET 401 450 ENSTTRP00000009873/1-1241 ENSLHVEWEN PPTKVDYYKL QYGPLTGQEV AEVTVPKSSD PKSRYDITGL bmy_21320T0/1-820 ENSLDVEWEN PPTKVDYYKL QYGPLTGQEV AEVSVPKSSD PKSRYDITGL BACU019714/1-1189 ENSLDVEWEN PPTRVDYYKL QYGPLTGQEV AEVSVPKSSN PKSRYDITGL ENSBTAP00000020785/1-1558 ENSLDVEWEN PLTEVDYYKL QYGPLTGQEV AEVTVPKSGD PKSRYDITGL 451 500 ENSTTRP00000009873/1-1241 QPGTEYKITV VPMRGDLEGK PILLNGRTEI DSPTNLVTDR VTEDTAMVSW bmy_21320T0/1-820 QPGTEYKIAV VPMRGDLEGK PILLNGRT-- ---------- VTEDTAMVSW BACU019714/1-1189 QPGTEYKIAV VPMRGDLEGK PILLNGRTEI DSPTNVVTDR VTEDTAMVSW ENSBTAP00000020785/1-1558 QPGTEYKITV IPMRGDLEGK PILLNGRTEI DSPTNVVTDR VTEDTVAVSW 501 550 ENSTTRP00000009873/1-1241 NPVRAVIDKY VVRYISTDGE MKDTAVYREQ SSTVLMGLKP GEVYKVYVWA bmy_21320T0/1-820 NPVQAVIDKY VVRYISTDGE TKDTAVHREQ SSTVLTGLKP GEVYKVYVWA BACU019714/1-1189 NPVQAVIDKY VVRYISTDGE TKDTAVHREQ SSTVLTGLKP GEVYKVYVWA ENSBTAP00000020785/1-1558 DPVRAVIDKY MVRYISADGE TKDTAVPREQ NSTVLTGLRP GEAYEVYVWA 551 600 ENSTTRP00000009873/1-1241 ERGNQESKKA DTKALTEIDS PQNLVTDGVT ENTATVSWDP VQAVIDRYLV bmy_21320T0/1-820 ERGNQESKKA DTRALTEIDS PQNLVTDGVT ENTATVSWDP VQAVIDRYLV BACU019714/1-1189 ERGNQESKKA DTKALTEIDS PQNLVTNGVT ENTVTVSWDP VQAVIDRYLV ENSBTAP00000020785/1-1558 ERGNQGSKKV DTTALTEIDS PQNLVTEQVT ENTATVSWDP VQAVIDRYLV 601 650 ENSTTRP00000009873/1-1241 R--------- ---------- ---------- ---------- ---------- bmy_21320T0/1-820 R--------- ---------- ---------- ---------- ---------- BACU019714/1-1189 R--------- ---------- ---------- ---------- ---------- ENSBTAP00000020785/1-1558 RYISADGDTR EVPVGKEQSS TVLTGLRPGV EYTVHVWAQK GDRESRKADT 651 700 ENSTTRP00000009873/1-1241 ---------- ---------- ---------- ---------- ---------- bmy_21320T0/1-820 ---------- ---------- ---------- ---------- ---------- BACU019714/1-1189 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020785/1-1558 KAPTEIDSPQ NLVTEQVTEN TATVSWAPVQ AGIDRYLVSY TSADGDTREV 701 750 ENSTTRP00000009873/1-1241 ---------- ---------- ---------- ---------- ---------- bmy_21320T0/1-820 ---------- ---------- ---------- ---------- ---------- BACU019714/1-1189 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020785/1-1558 PVGKEQSSTV LTGLRPGVEY TVHVWAQKGD RESRKADTKA PTELRSPLVE 751 800 ENSTTRP00000009873/1-1241 ---------- ---------- ---------- ---------- ---------- bmy_21320T0/1-820 ---------- ---------- ---------- ---------- ---------- BACU019714/1-1189 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020785/1-1558 NFCSRVYLCR SARDPIATVY SRLGPHPWDS PCNSFQRNPL SKSHLFVLSN 801 850 ENSTTRP00000009873/1-1241 ---------- ---------- ---------- ---------- ---------- bmy_21320T0/1-820 ---------- ---------- ---------- ---------- ---------- BACU019714/1-1189 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020785/1-1558 LIHSLYENPQ VWMYKEIYVH ETAETIFLSD IDSPQNLVTE QVTENTATVS 851 900 ENSTTRP00000009873/1-1241 ---------- ----YMSADG DSGEVPVGKE KSSTVLTGLR PGVEYTVHVW bmy_21320T0/1-820 ---------- ----YTSADG DSGEVPVGKE QSSTVLTGLR PGVEYTVHVW BACU019714/1-1189 ---------- ----YTSADG DSGEVPVGKE QSSTVLTGLR PGVEYTVHVW ENSBTAP00000020785/1-1558 WAPVQAVIDR YLVRYTSADG DSGEVPVGKE QSSTVLTGLR PGVEYTVHVW 901 950 ENSTTRP00000009873/1-1241 AQKGDQESRE ADTKALTDID SPQNLVTDQV TENTATVSWD PVQAVIDRYL bmy_21320T0/1-820 AQKGDQESRE ADTKAPTDID SPKNLVTDQV TENTATVSWD PVQAVIDRYL BACU019714/1-1189 AQKGDQESRE ADTKAPTDID SPQNLVTDQV TENTATVSWD LVQAVIDRYL ENSBTAP00000020785/1-1558 AQKGDRESRK ADTKAPTDID SPKNLVTEQV TENTATISWD PVQAVIDRYL 951 1000 ENSTTRP00000009873/1-1241 VRYTSAERDS GEVLVGKEQS SAVLTGLMPG VQYTVHV-AQ KGDQXXXXXX bmy_21320T0/1-820 VRYTSADGDS GEVP----EI KIAVMGW--- --WVSFTWLQ S--------- BACU019714/1-1189 VRYTSADGDS GEVQVGKEES STVLTGLRPG VEYTVHVWAQ KGDRESRKAD ENSBTAP00000020785/1-1558 VRYTSADGDT GEVPVGKEQS STILTGLRPG VEYTVHVWAQ NGDRESRKAD 1001 1050 ENSTTRP00000009873/1-1241 XXXXX----- ---------- ---------- ---------- ---------- bmy_21320T0/1-820 LGFPKH---- ---------- ---------- ---------- ---------- BACU019714/1-1189 TTAPT----- ---------- ---------- ---------- ---------- ENSBTAP00000020785/1-1558 TKAPTGNRAL FFGNVRPVMV RATWQPPSCN IMRYLSQQTS ITSESKVFFN 1051 1100 ENSTTRP00000009873/1-1241 ---------- ---------- ---------- ---------- --XIDSPQNL bmy_21320T0/1-820 ---------- ---------- ---------- ---------F LKEIDSPQNL BACU019714/1-1189 ---------- ---------- ---------- ---------- --DIDSPQNL ENSBTAP00000020785/1-1558 GTLQESKSLW GQNTYVHDAV RARKMEIPRN MKGCHPKQVF FSDIDSPQNL 1101 1150 ENSTTRP00000009873/1-1241 VTDQVTENTA TVSWDPVQAV IDRYLVRYTS AEGDSGEVLV GKEQSSAVLT bmy_21320T0/1-820 VTDQVTENTA TVSWDPVQAV IDRYLVCYTS ADGDSGEVPV GKEESSTVLT BACU019714/1-1189 VTDQVTENTA TVSWDPVQAV IDRYLVRYTS ADGDSGEVQV GKEESSTVLT ENSBTAP00000020785/1-1558 VTKQVTENTA TVSWDPVQAV IDRYLVRYTS ADGDTREVPV GKEQSSTVLT 1151 1200 ENSTTRP00000009873/1-1241 GLRPGVEYTV HVWAQKGDRK SRKADTTAPT EIDSPQNLVT DQVTENTATV bmy_21320T0/1-820 GLRPGVEYTV HVWAQKGDRE SRKADTKAPT DIDSPQNLVT DRVTENTATV BACU019714/1-1189 GLRPGVEYTV HVWAQKGDRE SRKADTTAPT DIDSPKNLVT DQVTENMATV ENSBTAP00000020785/1-1558 GLRPGVEYTV HVWAQKGDRE SRKADTKAPT EIDSPQNLMT EQVTENTATV 1201 1250 ENSTTRP00000009873/1-1241 SWDPVQAIID RYLVHYTSAE GDSGEVPVGK EQSSAVLTGL RPGVEYTVHV bmy_21320T0/1-820 SWDPVQAVID RYLVCYTSAD GDSGEVPVGK EESSTILTGL RPGVEYTVHV BACU019714/1-1189 SWDPVQAVID RYLVRYTSAD GDSGEVPVGK EQSSTVLTGL RPGVEYTVHV ENSBTAP00000020785/1-1558 SWAPVQAVID RYLVRYTSAD GDTREVPVGK EQSSTVLTGL RPGVEYTVHV 1251 1300 ENSTTRP00000009873/1-1241 WAQKGDRESR KANTTTPTDI DPPQNLHPSA VTQSGGVLTW TPPSAQIDGY bmy_21320T0/1-820 WAQKGDRESR KADTTA---- ---------- ---------- ---------- BACU019714/1-1189 WAQKGDRESR KADTTAPTDI DPPQNLYPSA VTQSGGVLTW TPPSAQIDGY ENSBTAP00000020785/1-1558 WAQKGDRESR KADTKAPTDI DPPQNLHPSA VTQSGGVLTW TPPSAEIDGY 1301 1350 ENSTTRP00000009873/1-1241 ILTYQFPDGT VKEVQLGRGD QRFELQGLEQ GVTLPVSLVA FKGDRRSRSV bmy_21320T0/1-820 ---------- ---------- ---------- ---------- ---------- BACU019714/1-1189 ILTYQFPDGT VKEVQLGRGD QRFELQGLEQ GVTLPVSLVA FKGDRRSRSV ENSBTAP00000020785/1-1558 ILTYQFPDGT VKEVQLGRGD QRFELQGLEQ GVTLPVSLVA FKGDRRSRSV 1351 1400 ENSTTRP00000009873/1-1241 STTLSTVGAR FPHPSDCSQV QQNSNVASGL YTVYLHGDAS RPLQVYCDMD bmy_21320T0/1-820 ---LTGNGAS F--------- ---------- ---------- ---------- BACU019714/1-1189 STTLSTVGAR FPHPSDCSQV QQNSNVASGL YTIYLHGDAS RPLQVYCDMD ENSBTAP00000020785/1-1558 STNLSTVGAR FPHPSDCSQV QQNSNAASGL YTIYLHGDAS RSLQVYCDMD 1401 1450 ENSTTRP00000009873/1-1241 TDGGGWIVFQ RRNTGQLDFF KRWRTYVEGF GDPMREFWLG LDKLHNLTTG bmy_21320T0/1-820 ---------- ---------- ---------F GN-------- ---------- BACU019714/1-1189 TDGGGWIVFQ RRNTGQLDFF KRWRTYVEGF GDPMREFWLG LDKLHNLTTG ENSBTAP00000020785/1-1558 TDGGGWIVFQ RRNTGQLDFF KRWRTYVEGF GDPMKEFWLG LDKLHNLTMG 1451 1500 ENSTTRP00000009873/1-1241 TPTRYEVRVD LQTANESAYA VYDSFRVASS KERYRLTVGK YRGTAXXXXX bmy_21320T0/1-820 ---------- ---------- ---------- ---------- ---------- BACU019714/1-1189 TPTRYEVRVD LQTASESAYA IYDSFQVASS KERYRLTVGK YRGTAGDALS ENSBTAP00000020785/1-1558 TPTRYEVRVD LQTANESAYA VYDSFQVASS KERYRLTVGK YRGTAGDALT 1501 1550 ENSTTRP00000009873/1-1241 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_21320T0/1-820 ---------- ---------- ---------- ---------- ---------- BACU019714/1-1189 YHNGWKFTTF DRDNDIALSN CALTHHGGWW YKNCHLANPN GRYGETKHSE ENSBTAP00000020785/1-1558 YHNGWKFTTF DRDNDIALSN CALTHHGGWW YKNCHLANPN GRYGETKHSE 1551 1600 ENSTTRP00000009873/1-1241 GVNWEPWKGH EFSIPFVELK IRPHGYSGEH VLGRKRQTLG ENSRTF bmy_21320T0/1-820 ---------- ---------- ---------- ---------- ------ BACU019714/1-1189 GVNWEPWKGH EFSIPFVELK IRPHGYSGER VLGRKKRTLG ENSRTF ENSBTAP00000020785/1-1558 GVNWEPWKGH EFSIPFVELK IRPHGYSGEH VLSRKKRMLG ENSRTF