KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:39 2014 Check: 00 .. Name: ENSP00000193391/1-1241 Len: 1313 Check: 4088 Weight: 1.00 Name: ENSTTRP00000014199/1-1242 Len: 1313 Check: 7569 Weight: 1.00 Name: ENSBTAP00000020801/1-1257 Len: 1313 Check: 9915 Weight: 1.00 Name: bmy_21337T0/1-1112 Len: 1313 Check: 9584 Weight: 1.00 Name: BACU000035/1-1112 Len: 1313 Check: 7288 Weight: 1.00 // 1 50 ENSP00000193391/1-1241 MIMFPLFGKI SLGILIFVLI EGDFPSLTAQ TYLSIEEIQE PKSAVSFLLP ENSTTRP00000014199/1-1242 MIMFPHFGKI SLGILIFVLI EGNLPSLTAQ TYLSLEESQE PKSTVSFLLT ENSBTAP00000020801/1-1257 MIMFPHFGKI SLCILIFVLI EGNLPSLT-- -----EEIQE PKSTVSFLQT bmy_21337T0/1-1112 ---------- ---------- ---------- ---------- ---------- BACU000035/1-1112 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000193391/1-1241 E-ESTDLSLA TKKKQPLDRR ETERQWLIRR RRSILFPNGV KICPDESVAE ENSTTRP00000014199/1-1242 DSESTDSSLS IEKKQPMDHR ETERQWLLRR KRSTLFPNGV KTCPDENVTE ENSBTAP00000020801/1-1257 DSESTDSSLS AKKKQPLDSR ETERHWLLRR KRSTLFPNGV KTCPDESVTE bmy_21337T0/1-1112 ---------- ---------- ---------- ---------- ---------- BACU000035/1-1112 ---------- ------MDHR ETERQWLLRR KRSTLFPNGV KTCPDENVTE 101 150 ENSP00000193391/1-1241 AVANHVKYFK VRVCQEAVWE AFRTFWDRLP GREEYHYWMN LCEDGVTSIF ENSTTRP00000014199/1-1242 AMANHVKYFK VRVCQEAVWE AFRTFWDRLP GREEYHYWMN LCEDGITTIF ENSBTAP00000020801/1-1257 AVANHVKYFK VRVCQEAVWE AFRTFWDRLP GREEYHYWMN LCEDGITTIF bmy_21337T0/1-1112 ---------- ---------- ---------- --------MN LCEDGITTIF BACU000035/1-1112 AMANHVKYFK VR-------- ---------- ---------- ---------- 151 200 ENSP00000193391/1-1241 EMGTNFSESV EHRSLIMKKL TYAKETVSS- --------SE LSSPVPVGDT ENSTTRP00000014199/1-1242 EMGTHFSQSV EHRSLIMKKL TYTKETVSS- --------PE LSSPVPVGDT ENSBTAP00000020801/1-1257 EMGTHFSQSV EHRSLIMQKL TYAKETVSGS CSYNQACGSE LSSPVPVGDM bmy_21337T0/1-1112 EMGTHFSQSV EHRSLIMKKL THTKETVSSS CN-DQDCGPE LSSPVPVGDT BACU000035/1-1112 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000193391/1-1241 STLGDTTLSV PHPEVDAYEG ASESSLERPE ESISNEIENV IEEATKPAGE ENSTTRP00000014199/1-1242 STLGGASLSV PYPGVTFYEG ISESSLERPE ESISNEIENV IEESTKPAVE ENSBTAP00000020801/1-1257 STLGDAGLSV PYPGVTSYEG ISESSLERPE DSISNEIENV VEESTKTAAE bmy_21337T0/1-1112 STLGGASLSV PYPGVTFYEG ISESSLERPE ES-------- ---------- BACU000035/1-1112 ----GASLSV PYPGVTFYEG ISESSLERPE ESISNEIENV IEESTKPAVE 251 300 ENSP00000193391/1-1241 QIAEFSIHLL GKQYREELQD SSSFHHQHLE EEFISEVENA FTGLPGYKEI ENSTTRP00000014199/1-1242 QVAEFSIHLL GEQYNEELQD PYSFHHQRLV EEFISEVENA FTGLLGYKDI ENSBTAP00000020801/1-1257 QVAEFSIHLL GEQYNEELQD PSSFHHQRLV EDFISEVENA FTGLPGYKDI bmy_21337T0/1-1112 ---------- ---------- ---------- ------VENA FTGLLGYKDI BACU000035/1-1112 QVAEFSIHLL GEQYNEELQD PSSFHHQRLV EEFISEVENA FTGLLGYKDI 301 350 ENSP00000193391/1-1241 RVLEFRSPKE ND--SGVDVY YAVTFNGEAI SNTTWDLISL HSNKVENHGL ENSTTRP00000014199/1-1242 HVLDFRSPKE NG--SGIDVH YAVTFNGDAI SNTTWDLISL HSNKVENHGL ENSBTAP00000020801/1-1257 RVLDFRSPKE NGSHSGIDVH YAVTFNGEAI SNTTWDLISL HSNKVENHGL bmy_21337T0/1-1112 HVLDFRSPKE NG--SGIDVH YAVTFNGEAI SNTTWDLISL HSNKVENHGL BACU000035/1-1112 HVLDFRSPKE NG--SGIDVH YAVTFNGEAI SNTTWDLISL HSNKVENHGL 351 400 ENSP00000193391/1-1241 VELDDKPTVV YTISNFRDYI AETLQQNFLL GNSSLNPDPD SLQLINVRGV ENSTTRP00000014199/1-1242 VELDDKPTAV YTISNFRDYI AETLHQNVLL GTSSLNLDPD SLQLIDVRGV ENSBTAP00000020801/1-1257 VELDDKPTAV YTISNFRDYI AETLHQNFLL GSSSLNPDPD SLQLINVRGV bmy_21337T0/1-1112 VELDDKPTAV YTISNFRDYI AETLHQNFLL GTSSLNLDPD SLQLIDVRGV BACU000035/1-1112 VELDDKPTAV YTISNFRDYI AETLHQKFLL GTSSLNLDPD SLQLIDVRGV 401 450 ENSP00000193391/1-1241 LRHQTEDLVW NTQSSSLQAT PSSILDNTFQ AAWPSADESI TSSIPPLDFS ENSTTRP00000014199/1-1242 LLPQSEDQVW NTQSSSLQET LPSILDNTPQ AEWPSADEFT MSSISPLDFS ENSBTAP00000020801/1-1257 LLPQSEDQVW NTQSSSLQQA LPSILDNTPQ AEWPSADEST TSSISPLGFS bmy_21337T0/1-1112 LLPQSEDQVW NTQSSSLQET LPSILDNTPQ AEWPSADEFT MSSISPLDFS BACU000035/1-1112 LLPQSEDQVW NTQSSSLQET LPSFLDNTPQ AEWPSADEFT TSSISPLDFS 451 500 ENSP00000193391/1-1241 SGPPSATGRE LWSESPLGDL VSTHKLAFPS KMGLSSSPEV LEVSSLTLHS ENSTTRP00000014199/1-1242 SGPPSTTGRE LWSESPLGDL VSAPKLAFPS KMSLSSSPEV LEVSSLTLHS ENSBTAP00000020801/1-1257 SGLPSATGRE LWSESPLGDL VSTPKLAFPS KVSLSSSPEV LDVSGLTLHS bmy_21337T0/1-1112 SGPPSTTGRE LWSEGPLGDL VSTPKLAFPS KVSLSSSPEV LEVSSLTLHS BACU000035/1-1112 SGPPSTTGRE LWSEGPLGDL VSAPKLAFPS KVSLSSSPEV LEVSSLTLHS 501 550 ENSP00000193391/1-1241 VTPAVLQTGL PVASEERTSG SHLVEDGLAN VEESEDFLSI DSLPSSSFTQ ENSTTRP00000014199/1-1242 VTPAVLQTGL PVASEERTSG SHSLEDGLTK VKGSEDFLSI DPLPSSPFSR ENSBTAP00000020801/1-1257 VTPAVLQTDL PVASEERTSG SHSLEDGLMK VEVSEDFLSI NPLPSSPFTY bmy_21337T0/1-1112 VTPVVLQTGL PVASEERTSG SHSLEDGLTK VKGSEDFLSI DPLPSSPFSR BACU000035/1-1112 VTPAVLQTGL PVASEERTSG SHSLEDGLTK VKGSEDFLSI DPLPSSPFSR 551 600 ENSP00000193391/1-1241 PVPKETIPSM EDSDVSLTSS PYLTSS---- -------IPF GLDSLTSKVK ENSTTRP00000014199/1-1242 PMPKEIIPSM EDSGVSLTSS PYPVSS---- -------TPF GMDSLASKVK ENSBTAP00000020801/1-1257 PVPKETPPSM EDSGVSLPSS PYPVSSVTFD LLAKEVTTPF GMDSLASKVK bmy_21337T0/1-1112 PVPKEIIPSM EDSGVSLTSS PYPVSSVTFD ILAKEV-TPF GMDSLASKVK BACU000035/1-1112 PVPKEIIPSM EDSGVSLTSS PYPVSSVTFD ILAKEV-TPF GMDSLASKVK 601 650 ENSP00000193391/1-1241 DQLKVSPFLP DASMEKELIF DGGLGSGSGQ KVDLITWPWS ETSSEKSAEP ENSTTRP00000014199/1-1242 GQLEASTWMP DTSMEKEFIF ESGLGSGSGQ KVGLITWPWS KTSLEKSTEP ENSBTAP00000020801/1-1257 DQLEVSSWMP DTTMEKEFMF ESGLGSGSGQ KIDLITWPWS ETSLEKSTEP bmy_21337T0/1-1112 GQSEVSTWMP DTSMEKEFIF ESGLGSGSGQ KVGLITWPWS KTSLEKSTEP BACU000035/1-1112 GQLEVSTWMP DTSMEKEFIF ESGLGSGSGQ KVGLITWPWS KTSLEKSTEP 651 700 ENSP00000193391/1-1241 LSKPWLEDDD S---LLPAEI EDKKLVLVDK MDSTDQISKH SKYEHDDRST ENSTTRP00000014199/1-1242 FSKSWLEVED SEDLLLPTED TDEKLVIDDR IDSIDQSTEH SKYGHFDRST ENSBTAP00000020801/1-1257 LSKSWLEVED S---LLLTEG IDVKPVIDDK IDSADQRAEH SEYGPFDGST bmy_21337T0/1-1112 FSKSWLEVED SEDLLLPTED IDEKLVIDDR IDSIDQSTEH SKYGHFDRSR BACU000035/1-1112 FSKSWLEVED SEDLLLPTED IDEKLVIDDR IDSIDESTEH SKYEHFDRSR 701 750 ENSP00000193391/1-1241 HFPEEEPLSG PAVPIFADTA AESASLTLPK HISEVPGVDD YSVTKAPLIL ENSTTRP00000014199/1-1242 NFAEDETLGG PTASIFAETT TQSASPVLSK HTSEVPDIDY YSITKSPPLL ENSBTAP00000020801/1-1257 NFAEDEPLGG PTVSLFAETT TQSASPVLPK HTSEVPDIDY YSVTKSPPLL bmy_21337T0/1-1112 SFAEDETLGG PTVSIFAETT TQSASPVLSK HTSEVPDIDY YSITKSPPLL BACU000035/1-1112 SFAEDETLGG PTVSIFAETT TQSASPVLSK HTSEVPDIDY YSVTKSPPLL 751 800 ENSP00000193391/1-1241 TSVAISASTD KSDQADAILR EDMEQITESS NYEWFDSEVS MVKPDMQTLW ENSTTRP00000014199/1-1242 TSAAISASTD KPIQ-EPFLK EDMEQTTESS NREWFDSKIS VVXXXXXXXX ENSBTAP00000020801/1-1257 TFVAVSASID KADQVEHFLK EDMEQTTESF NHEWFDSKIS IEKSDVQPLR bmy_21337T0/1-1112 TSAAISASTD KPVQEEPFLK EDMEQTTESS NREWFDSKIS VVKPDVQPLW BACU000035/1-1112 TSAAISASTD KPVQEEPFLK KDMEQTTESS NREWFDSKIS VVKPDVQPLW 801 850 ENSP00000193391/1-1241 TILPESERVW TRTSSLEKLS RDILASTPQS ADRLWL--SV TQSTKLPPTT ENSTTRP00000014199/1-1242 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX-XXXXXX XXXXXXXXXX ENSBTAP00000020801/1-1257 TTVPESDVFW ARTSPLGKLS RDTLASTPQS TDKLWLKASM TQSTKLPSTI bmy_21337T0/1-1112 TILPESDVVW ARTSSLGKLS RDTLASTPQG TDKLWLKASM TQSTKLPSTT BACU000035/1-1112 TILPESDVVW ARTSSLGKLS RDTLASTPQS TDKLWLKASM TQSTKLPSTT 851 900 ENSP00000193391/1-1241 ISTLLEDEVI MGVQDISLEL DRIGTDYYQP EQVQEQNGKV GSYVEMSTSV ENSTTRP00000014199/1-1242 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020801/1-1257 SSTLLEDEVI MGVQDISLEL DQIGTDYYQP ELIPEESGMV GSYVEMSTNI bmy_21337T0/1-1112 SSTLLEDEVI MGVQDISLEL DQIGTDYYHP ELIPEENGKV GGYVEMSTSI BACU000035/1-1112 SSTLLEDEVI MGVQDISLEL DQIGTDYYHP ELIPEENGKV GGYVEMSTSI 901 950 ENSP00000193391/1-1241 HSTEMVSVAW PTEGGDDLSY TQTSGALVVF FSLRVTNMMF SEDLFNKNSL ENSTTRP00000014199/1-1242 XXXXXXXXXX XXX-XXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020801/1-1257 HSTEMAVVAQ PTR-SDDLSH TQAVGAVVVF FSLRVTNMMF SEDLFNKNSL bmy_21337T0/1-1112 HSTEMAIVAQ PTK-SDDLSH TQAAGALVVF FSLRVTNMMF SEDLFNKNSL BACU000035/1-1112 HSTEMAIVAQ PTK-SDDLSH TQAAGALVVF FSLRVTNMMF SEDLFNKNSL 951 1000 ENSP00000193391/1-1241 EYKALEQRFL ELLVPYLQSN LTGFQNLEIL NFRNGSIVVN SRMKFANSVP ENSTTRP00000014199/1-1242 XXKALEQ-FL ELLVPYLQSN LTGFQNLEIL NFRNGSIVVN SRMKFAKSVP ENSBTAP00000020801/1-1257 EYKALEQRFL ELLVPYLQSN LTGFQNLEIL NFRNGSIVVN SRMKFTRSVL bmy_21337T0/1-1112 EYKALEQRFL ELLVPYLQSN LTGFQNLEIL NFRNGSIVVN SRMKFAKSVP BACU000035/1-1112 EYKALEQRFL ELLVPYLQSN LTGFQNLEIL NFRNGSIVVN SRMKFAKSVP 1001 1050 ENSP00000193391/1-1241 PNVNNAVYMI LEDFCTTAYN TMNLAIDKYS LDVESGDEAN PCKFQACNEF ENSTTRP00000014199/1-1242 PNVTNTVYVI LEDFCTTAYQ TMNLAIDKYS LDVESGDQAN PCKFQACNEF ENSBTAP00000020801/1-1257 PNVTNAVYVI LEDFCTTAYQ TMNLAIDKYS LDVESGDQAN PCKFQACNEF bmy_21337T0/1-1112 PNVTNAVYVI LEDFCTTAYQ TMNLAIDKYS LDVESGDQAN PCKFQACXEF BACU000035/1-1112 PNVTNAVYVI LEDFCTTAYQ TMNLAIDKYS LDVESGDQAN PCKFQACNEF 1051 1100 ENSP00000193391/1-1241 SECLVNPWSG EAKCRCFPGY LSVEERPCQS LCDLQPDFCL NDGKCDIMPG ENSTTRP00000014199/1-1242 SECLVNPWSG EAECRCYPGY LSVEELPCQS LCDLQPDFCL NDGKCDIMPG ENSBTAP00000020801/1-1257 SECLVNPWSG EAECRCYPGY LSVEDLPCQS LCDLQPNFCL NDGKCDIMPG bmy_21337T0/1-1112 SECLVNPWSG EAECRCYPGY LSVEELPCQS LCDLQPDFCL NDGKCDIMPX BACU000035/1-1112 SECLVNPWSG EAECKCYPGY LSVEELPCQS LCDLQPDFCL NDGKCDIMPG 1101 1150 ENSP00000193391/1-1241 HGAICRCRVG ENWWYRGKHC EEFVSEPVII GITIASVVGL LVIFSAIIYF ENSTTRP00000014199/1-1242 HGAICRCRVG ENWWYRGEHC EEFVSEPLVI GITIASMVG- ILISSAFVFF ENSBTAP00000020801/1-1257 HGAICRCRVG ENWWYRGEHC EEFVSEPLVI GVTIASMIGL VLISSAVVFF bmy_21337T0/1-1112 HGAICRCRVG GNWWYRGEHC EEFVSEPLVI GITIASMVGL VLISSAFVFF BACU000035/1-1112 HGAICRCRVG GNWWHRGERC EEFVSEPLVI GITIASMVGL VLISSAFVFF 1151 1200 ENSP00000193391/1-1241 FIRTLQAHHD RSERESPFSG SSRQPDSLSS IENAVKYNPV YESHRAGCEK ENSTTRP00000014199/1-1242 LIRTLQARYV RRERERPFSG SSRQPDSLSS VERAVKHNPV FESHGADLEQ ENSBTAP00000020801/1-1257 IIKALQAQYV RRERERPSS- SSRQRDGLSS VERAVKHNPV FESYEADLEQ bmy_21337T0/1-1112 IIRTLQAQYV RRERERPF-- -SRQPDSLSF VERAVKHNPV FESHGADLEQ BACU000035/1-1112 IIRTFQAQYV RRERERPF-- --RQPDSLSS VERAVKHDPV FESHGADLEQ 1201 1250 ENSP00000193391/1-1241 YEGPYPQHPF YSSASGDVIG GLSREEIRQM YESSELSREE IQERMRVLEL ENSTTRP00000014199/1-1242 YEGPYPQRPF YSSTGREMIA GLSREEIRQM YENSELSREE IQERMRILEL ENSBTAP00000020801/1-1257 YEGPYPQRPF YSSTDREMIA GLSREEIRQM YENSDLSREE IQERMRILEL bmy_21337T0/1-1112 YEGPYPQRPF YSSTGREMTA GLSREEIRQM YENSELSREE IQERMRILEL BACU000035/1-1112 YEGPYPQRPF YSSTGREVIA GLSREEIRQM YENSELSREE IQERMRILEL 1251 1300 ENSP00000193391/1-1241 YANDPEFAA- FVR---EQQV EEV------- ---------- ---------- ENSTTRP00000014199/1-1242 YARDPEFAA- FVR---EHQM EEL------- ---------- ---------- ENSBTAP00000020801/1-1257 YARDPEFAA- FVR---EHQM EEL------- ---------- ---------- bmy_21337T0/1-1112 YAKDPEFAA- FGRALTKTPI LQLIRSLEKM EITRYLCHII NLDLELSVKD BACU000035/1-1112 YAKDPEFAAA FVR---EHQI LEKATSHRNF N--------- ---------- 1301 1350 ENSP00000193391/1-1241 ---------- --- ENSTTRP00000014199/1-1242 ---------- --- ENSBTAP00000020801/1-1257 ---------- --- bmy_21337T0/1-1112 NTYVGKGHIS YKF BACU000035/1-1112 ---------- ---