KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:42 2014 Check: 00 .. Name: BACU008290/1-920 Len: 1026 Check: 297 Weight: 1.00 Name: ENSBTAP00000020819/1-674 Len: 1026 Check: 9624 Weight: 1.00 Name: ENSP00000434241/1-757 Len: 1026 Check: 9161 Weight: 1.00 Name: ENSTTRP00000002262/1-765 Len: 1026 Check: 1202 Weight: 1.00 Name: bmy_14005T0/1-478 Len: 1026 Check: 816 Weight: 1.00 // 1 50 BACU008290/1-920 MSPPPLLLLL LPLLTMQPTG ATLIRTPLRR VYTGLRALNP LRGWDKPAEP ENSBTAP00000020819/1-674 ---------- ---------- ---------- -MLSSVCVSS FRGRQGASKQ ENSP00000434241/1-757 ---------- ---------- ---------- -MLSSVCVSS FRGRQGASKQ ENSTTRP00000002262/1-765 ---------- ---------- ---------- -MLNSVCVSS FRGRQGSSKQ bmy_14005T0/1-478 ---------- ---------- ---------- ---------- ---------- 51 100 BACU008290/1-920 PRLGAPSPGD KDFFVPLSNY MNVQYYGEIG LGTPPQNFSV VFDTGSSNLW ENSBTAP00000020819/1-674 QPAPPPQPFE SPSPLP---- ---------- -SPPPP---- ---------- ENSP00000434241/1-757 QPAPPPQPPE SP-------- ---------- --PPPP---- ---------- ENSTTRP00000002262/1-765 QPVSPPQPSE SPLPLPPPP- ---------- -PPPPP---- ---------- bmy_14005T0/1-478 ---------- ---------- ---------- ---------- ---------- 101 150 BACU008290/1-920 VPSVRCHFFS LPCWVHHRFN SKASSSFRPN GTKFAIQYGT GRLDGILSED ENSBTAP00000020819/1-674 ---------- -PPLLQQQQP AQPGPAASPA GPPAPRGPGG RRAEPC---- ENSP00000434241/1-757 ---------- LPP--QQQQP AQPGPAASPA GPPAPRGPGD RRAEPC---- ENSTTRP00000002262/1-765 ---------- -PPLQQQQQP AQPGPAASPA GPPAPRGPGG RRAEPC---- bmy_14005T0/1-478 ---------- ---------- ---------- ---------- ---------- 151 200 BACU008290/1-920 KLTIGGITGA SVIFGEALWE PSLVFTFAHF DGVLGLGFPV LAVGGVRPPL ENSBTAP00000020819/1-674 ---------- ---------- ---------- -----PGLPA AAMG------ ENSP00000434241/1-757 ---------- ---------- ---------- -----PGLPA AAMG------ ENSTTRP00000002262/1-765 ---------- ---------- ---------- -----PGLPA AAMG------ bmy_14005T0/1-478 ---------- ---------- ---------- ---------- ---------- 201 250 BACU008290/1-920 DRLVDQGLLD KPVFSFYLNR DPEAADGGEL VLGGSDPAHY IPPLTFVSVT ENSBTAP00000020819/1-674 ---------- --------RH GGGGGDSGKI VIN------- ---------- ENSP00000434241/1-757 ---------- --------RH GGGGGDSGKI VIN------- ---------- ENSTTRP00000002262/1-765 ---------- --------RH GGGGGDSGKI VIN------- ---------- bmy_14005T0/1-478 ---------- ---------- ---------- ---------- ---------- 251 300 BACU008290/1-920 IPAYWQIHME RVEVGTGLTL CARGCAAILD TGTSLITGPT EEIRALQAAT ENSBTAP00000020819/1-674 ---------- ---------- ---------- ---------- ---------- ENSP00000434241/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002262/1-765 ---------- ---------- ---------- ---------- ---------- bmy_14005T0/1-478 ---------- ---------- ---------- ---------- ---------- 301 350 BACU008290/1-920 GGVPLLMGEY LIQCSKIPTL PPVSFLLGGV WFNLTAQDYV IQTYRSTLRT ENSBTAP00000020819/1-674 ---------- ---------- ------VGGV RH-------- -ETYRSTLRT ENSP00000434241/1-757 ---------- ---------- ------VGGV RH-------- -ETYRSTLRT ENSTTRP00000002262/1-765 ---------- ---------- ------VGGV RH-------- -EMYRSTLRT bmy_14005T0/1-478 ---------- ---------- ---------- ---------- ---------- 351 400 BACU008290/1-920 LPGTRLAGLT EPEAAARFDY DPGADEFFFD RHPGVFAYVL NYYRTGKLHC ENSBTAP00000020819/1-674 LPGTRLAGLT EPEAAARFDY DPGADEFFFD RHPGV----- ---------- ENSP00000434241/1-757 LPGTRLAGLT EPEAAARFDY DPGADEFFFD RHPGVFAYVL NYYRTGKLHC ENSTTRP00000002262/1-765 LPGTRLAGLT EPEAAARFDY DPGADEFFFD RHPGVFAYVL NYYRTGKLHC bmy_14005T0/1-478 ---------- ---------- ---------- ---------- ---------- 401 450 BACU008290/1-920 PADVCGPLFE EELGFWGIDE TD-------- ---------- ---------- ENSBTAP00000020819/1-674 ---------- ---------- ---------- ---------- ---------- ENSP00000434241/1-757 PADVCGPLFE EELGFWGIDE TDVEACCWMT YRQHRDAEEA LDSFEAPDPA ENSTTRP00000002262/1-765 PADVCGPLFE EELGFWGIDE TDVEA-YWMT YRQHRDAEEA LXXXXXXXXX bmy_14005T0/1-478 ---------- ---------- ---------- ---------- ---------- 451 500 BACU008290/1-920 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020819/1-674 ---------- ---------- ---------- ---------X DAGGGAGGPP ENSP00000434241/1-757 GAANAANAAG AHDGGLDDEA GAGGGGLDGA GGELKRLCFQ DAGGGAGGPP ENSTTRP00000002262/1-765 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14005T0/1-478 ---------- ---------- ---------- ---------- ---------- 501 550 BACU008290/1-920 ---------- -----PRVWA LFEDPYSSRA ARYVAFASLF FILISITTFC ENSBTAP00000020819/1-674 GGAGGAGGTW WRRWQPRVWA LFEDPYSSRA ARYVAFASLF FILISITTFC ENSP00000434241/1-757 GGAGGAGGTW WRRWQPRVWA LFEDPYSSRA ARYVAFASLF FILISITTFC ENSTTRP00000002262/1-765 XXXXXXXXXX WRRWQPRVWA LFEDPYSSRA ARYVAFASLF FILISITTFC bmy_14005T0/1-478 ---------- ---------- ---------- --YVAFASLF FILISITTFC 551 600 BACU008290/1-920 LETHEGFIHI SNKTVTQASP IPGAPPENIT NVEVETEPFL TYVEGVCVVW ENSBTAP00000020819/1-674 LETHEGFIHI SNKTVTQASP IPGAPPENVT NVEVETEPFL TYVEGVCVVW ENSP00000434241/1-757 LETHEGFIHI SNKTVTQASP IPGAPPENIT NVEVETEPFL TYVEGVCVVW ENSTTRP00000002262/1-765 LETHEGFIHI SNKTVTQASP IPGAPPENIT NVEVETEPFL TYVEGVCVVW bmy_14005T0/1-478 LETHEGFIHI SNKTVMQASP IPGAPPENIT NVEVETEPFL TYVEGVCVVW 601 650 BACU008290/1-920 FTFEFLMRIT FCPDKVEFLK SSLNIIDCVA ILPFYLEVGL SGLSSKAAKD ENSBTAP00000020819/1-674 FTFEFLMRIT FCPDKVEFLK SSLNIIDCVA ILPFYLEVGL SGLSSKAAKD ENSP00000434241/1-757 FTFEFLMRIT FCPDKVEFLK SSLNIIDCVA ILPFYLEVGL SGLSSKAAKD ENSTTRP00000002262/1-765 FTFEFLMRIT FCPDKVEFLK SSLNIIDCVA ILPFYLEVGL SGLSSKAAKD bmy_14005T0/1-478 FTFEFLMRIT FCPDKVEFLK SSLNIIDCVA ILPFYLEVGL SGLSSKAAKD 651 700 BACU008290/1-920 VLGFLRVVRF VRILRIFKLT RHFVGLRVLG HTLRASTNEF LLLIIFLALG ENSBTAP00000020819/1-674 VLGFLRVVRF VRILRIFKLT RHFVGLRVLG HTLRASTNEF LLLIIFLALG ENSP00000434241/1-757 VLGFLRVVRF VRILRIFKLT RHFVGLRVLG HTLRASTNEF LLLIIFLALG ENSTTRP00000002262/1-765 VLGFLRVVRF VRILRIFKLT RHFVGLRVLG HTLRASTNEF LLLIIFLALG bmy_14005T0/1-478 VLGFLRVVRF VRILRIFKLT RHFVGLRVLG HTLRASTNEF LLLIIFLALG 701 750 BACU008290/1-920 VLIFATMIYY AERIGADPDD ILGSNHTYFK NIPIGFWWAV VTMTTLGYGD ENSBTAP00000020819/1-674 VLIFATMIYY AERIGADPND ILGSNHTYFK NIPIGFWWAV VTMTTLGYGD ENSP00000434241/1-757 VLIFATMIYY AERIGADPDD ILGSNHTYFK NIPIGFWWAV VTMTTLGYGD ENSTTRP00000002262/1-765 VLIFATMIYY AERIGADPDD ILGSNHTYFK NIPIGFWWAV VTMTTLGYGD bmy_14005T0/1-478 VLIFATMIYY AERIGADPDD ILGSNHTYFK NIPIGFWWAV VTMTTLGYGD 751 800 BACU008290/1-920 MYPKTWSGML VGALCALAGV LTIAMPVPVI VNNFGMYYSL AMAKQKLPKK ENSBTAP00000020819/1-674 MYPKTWSGML VGALCALAGV LTIAMPVPVI VNNFGMYYSL AMAKQKLPKK ENSP00000434241/1-757 MYPKTWSGML VGALCALAGV LTIAMPVPVI VNNFGMYYSL AMAKQKLPKK ENSTTRP00000002262/1-765 MYPKTWSGML VGALCALAGV LTIAMPVPVI VNNFGMYYSL AMAKQKLPKK bmy_14005T0/1-478 MYPKTWSGML VGALCALAGV LTIAMPVPVI VNNFGMYYSL AMAKQKLPKK 801 850 BACU008290/1-920 KNKHIPRPPQ PGSPNYCKPD PPPPPPPHPH HSSSSISPPP PITPPSMGVT ENSBTAP00000020819/1-674 KNKHIPRPPQ PGSPNYCKPD PPPPPPLPPH HGSGGISPPP PITPPSMGVT ENSP00000434241/1-757 KNKHIPRPPQ PGSPNYCKPD PPPPPPPHPH HGSGGISPPP PITPPSMGVT ENSTTRP00000002262/1-765 KNKHIPRPPQ PGSPNYCKPD PPPPPPPHPH HSSGSISPPP PITPPSMGVT bmy_14005T0/1-478 KNKHIPRPPQ PGSPNYCKPD PPPPPPPHPH HSSGSISPPP PITPPSMGVT 851 900 BACU008290/1-920 VAGAYPPGPH THPGLLRGGA GGLGIMGLPP LPAPGEPCPL AQEEVIEINR ENSBTAP00000020819/1-674 VAGAYPPGPH THPGLLRGGA GGLGIMGLPP LPAPGEPCPL AQEEVVEINR ENSP00000434241/1-757 VAGAYPAGPH THPGLLRGGA GGLGIMGLPP LPAPGEPCPL AQEEVIEINR ENSTTRP00000002262/1-765 VAGAYPPGPH THPGLLRGGA GGLGIMGLPP LPAPGEPCPL AQEEVIEINR bmy_14005T0/1-478 VAGAYPPGPH THPGLLRGGA GGLGIMGLPP LPAPGEPCPL AQEEVIEINR 901 950 BACU008290/1-920 A-----DPRP NGDPAAAALA HEDCPAIDQP AMSPEDKSPI TPGSRGRYSR ENSBTAP00000020819/1-674 AAPLNTDPRP NGDPAAAALA HEDCPAIDQP -MSPEDKSPI TPVSQGIYGM ENSP00000434241/1-757 A-----DPRP NGDPAAAALA HEDCPAIDQP AMSPEDKSPI TPGSRGRYSR ENSTTRP00000002262/1-765 A-----DPRP NGDPAAAALA HEDCPAIDQP AMSPEDKSPI TPGSRGRYSR bmy_14005T0/1-478 A-----DPRP NGDPAAAALA HEDCPAIDQP AMSPEDKSPI TPGSRGRYSR 951 1000 BACU008290/1-920 DRACFLLSDY APSPDGSIRK G--------P LSDSQDALIK TDPLVLPSKA ENSBTAP00000020819/1-674 WKVCSYLTCS FPDPRISERQ GYEKSRSLSS IAGLSGVSLR LAPLATPPGS ENSP00000434241/1-757 DRACFLLTDY APSPDGSIRK A--------- ---------- ---TGAPPLP ENSTTRP00000002262/1-765 DRACFLLTDY APSPDGSIRK A--------- ---------- ---TGAPPLP bmy_14005T0/1-478 DRACFLLTDY APSPDGSIRK GYEKSRSLSS IAGLSGVSLR LAPLATPPGS 1001 1050 BACU008290/1-920 LEEPRHWQNS SDIPKFSRNP TCAPKP ENSBTAP00000020819/1-674 PRAARR-APP T-LPSIL--- ------ ENSP00000434241/1-757 PQDWRKPGPP SFLPDLNANA AAWISP ENSTTRP00000002262/1-765 PQDWRKPGPP SFLPDLNANA AAWISP bmy_14005T0/1-478 PRAARR-APP T-LPSIL--- ------