KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:44 2014 Check: 00 .. Name: ENSP00000363232/1-513 Len: 696 Check: 2106 Weight: 1.00 Name: ENSBTAP00000020826/1-648 Len: 696 Check: 9473 Weight: 1.00 Name: ENSTTRP00000005110/1-634 Len: 696 Check: 4686 Weight: 1.00 Name: bmy_05213T0/1-394 Len: 696 Check: 5530 Weight: 1.00 Name: BACU007314/1-496 Len: 696 Check: 9802 Weight: 1.00 // 1 50 ENSP00000363232/1-513 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020826/1-648 MEERGSPDGD PARNLEQGPE GPETPIQVVL RVRPMSAAEL RRGEQSVLHC ENSTTRP00000005110/1-634 MEERGSPDGD PARNLEQGPE GPETPIQVVL RVRPMSAAEL RRGEQSVLHC bmy_05213T0/1-394 ---------- ---------- ---------- ---------- ---------- BACU007314/1-496 MVNSRCCHRD PARNLEQGPE GPETPIQVVL RVRPMSAAEL RRGEQSVLHC 51 100 ENSP00000363232/1-513 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020826/1-648 SGTRTLQVSP PGGGPDVAFR FGAVLDGAST QDDVFRACGV RRLGELALRG ENSTTRP00000005110/1-634 SGTRTLQ--- ---------- ---VLDGART QEDVFRACGV RRLGDLALRG bmy_05213T0/1-394 ---------- ---------- ---------- ---------- ---------- BACU007314/1-496 SGTRTL---- ---------- ---------- ---------- ---------- 101 150 ENSP00000363232/1-513 ---------- ---------- ---------- --------MQ RTFAWLLDRV ENSBTAP00000020826/1-648 FSCTVFTFGQ TGSGKTYTLT GPPPQGEGVP VPPSLAGIMQ RTFTWLLDRV ENSTTRP00000005110/1-634 FSCTVFAFGQ TGSGKTYTLT GPPPQXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05213T0/1-394 ---------- ---------- ---------- ---------- ---------- BACU007314/1-496 ---------- ---------- ----QGEGVP VPPSLAGIMQ RTFAWLFDRV 151 200 ENSP00000363232/1-513 QHLGAPVTLR ASYLEIYNEQ VRDLLSLGSP RPLPVRWNKT RGFYVEQLRV ENSBTAP00000020826/1-648 QHLDVPVTLH ASYLEIYNEQ IRDLLSLGAP RPLPVRWNKT RGFYVEQLRV ENSTTRP00000005110/1-634 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXV bmy_05213T0/1-394 ---------- ---------- ---------- ---------- ---------- BACU007314/1-496 QHLGAPVTLH ASYLEIYNEQ VRDLLSLGAP RPLPVRWNKT RGFYVEQLRV 201 250 ENSP00000363232/1-513 VEFGSLEALM ELLQTGLSRR RNSAHTLNQA SSRSHALLTL YISRQTAQQM ENSBTAP00000020826/1-648 VEFGSLGALM ELLQMGLSRR RSSAHTLNQA SSRSHALLTL YIGHQTPQQM ENSTTRP00000005110/1-634 VEFGSLET-M ELLQMGLSRR RSAAHTMNQA SSRSHALLTL YISHQTPQQM bmy_05213T0/1-394 ---------- ---------- ---------- ---------- ---------M BACU007314/1-496 VEFGSLGALM ELLQMGLSRR RSSAHTMNQA SSRSHALLTL YISHQT--QM 251 300 ENSP00000363232/1-513 PSVDPGEPPV GGKLCFVDLA GSEKVAATGS RGELMLEANS INRSLLALGH ENSBTAP00000020826/1-648 PPVDAGELPA GGKLCFVDLA GSEKVVATGS RGELMLEANS INRSLLALGH ENSTTRP00000005110/1-634 PPVDPGEPPA GGKLCFVDLA GSEKVAATGS RGELMTEANS INRSLLALGH bmy_05213T0/1-394 PPVDPGEPPA GGKLCFVDLA GSEKVAATGS RGELMLEANS INRSLLALGH BACU007314/1-496 PPVDPGEPPA GGKLCFVDLA GSEKVAATGS RGELMLEANS INRSLLALGH 301 350 ENSP00000363232/1-513 CISLLLDPQR KQSHIPFRDS KLTKLLADSL GGRGVTLMVA CVSPSAQCLP ENSBTAP00000020826/1-648 CISLLLDPQR KQSHIPFRDS KLTKLLADSL GGHGVTLMVA CVSPSAQCLP ENSTTRP00000005110/1-634 CISLLLDPQR KQNHIPFRDS KLTKLLADSL GGRGVTLMVA CVSPSAQCLP bmy_05213T0/1-394 CISLLLDPQR KQSHIPFRDS KLTKLLADSL GGRGVTLMVA CVSPSAQCLP BACU007314/1-496 CISLLLDPQR KQSHIPFRDS KLTKLLADSL GGRGVTLMVA CVSPSAQCLP 351 400 ENSP00000363232/1-513 ETLSTLRYAS RAQRVTTRPQ APKSPVAKQP QRLETEMLQL QEENRRLQFQ ENSBTAP00000020826/1-648 ETLSTLRYAS RAQRVTTRPQ APRPPKAKPP QHLETELLQL QEENLHLRSQ ENSTTRP00000005110/1-634 ETLSTLRYAS RAQRITTRPQ APKSPVAKPP QHLETELLQL QEENHRLRSQ bmy_05213T0/1-394 ETLSTLRYAS RAQRITTRPQ APKSPVAKPP QHLETELLQL QEENHRLRSQ BACU007314/1-496 ETLSTLRYAS RAQRITTRPQ APKSPVAKPP QHLETELLQL QEENHRLRSQ 401 450 ENSP00000363232/1-513 LDQMDCKASG LSGARVAWAQ RNLYGMLQEF MLENERLRKE KSQLQNSRDL ENSBTAP00000020826/1-648 LGQMDPKASG LSGARAAWAQ RNLYGMLQEF MLENERLRKE KKQLQSSRDL ENSTTRP00000005110/1-634 LGQMDPKASG LTGARVSWAQ RNLYGMLQEF MLENERLRKE KRQLQSSRDL bmy_05213T0/1-394 LGQMDPKASG LIGARVAWAQ RNLYGMMQEF MLENERLR-- ---------- BACU007314/1-496 LGQMDPKASG LTGARVAWAQ RNLYGMLQEF MLENERLRKE KRQLQSSRDL 451 500 ENSP00000363232/1-513 AQNEQRILAQ QVHALERRLL SACYHHQQGP GLTPPCPCLM APAPPCHALP ENSBTAP00000020826/1-648 AHGEQRILAQ QVRELERRLL SACYLQQPGP GPTPPCPCVM VPPLLCHAPP ENSTTRP00000005110/1-634 AQDEQRILAQ QVHELERRLL SACYLPQPGP GPAPPCPCVM VPPAPCHALP bmy_05213T0/1-394 ---------- -------RLL SACYLHQPGP GPAPPCPCAM VPPPPCHALP BACU007314/1-496 AQDEQRILAQ QVHEL----- ---------- ---------- ---------- 501 550 ENSP00000363232/1-513 PLYSCPCCHI CPLCRVPLAH WACLPGEHHL PQVLDPEASG GRPPSARPPP ENSBTAP00000020826/1-648 LL--CPRCQL CPLCRAPLAH WACPRRELHL PQVFGSKAPG DWPLSARPPP ENSTTRP00000005110/1-634 PLCPCPCCHL CPLCQAPLAF WACPRRELHL PQVFGSKAPA DMPLSARPPP bmy_05213T0/1-394 PLCPCPCCHL CPLCRAPLAH WACPQRELHL PQVFGSKAPA DMPLPARPPP BACU007314/1-496 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000363232/1-513 WAPPCSPGSA KCPRE----- ---------- ---------- ------RSHS ENSBTAP00000020826/1-648 WAPPCCPSSA KCSRE----- ---------- ---------- ------RSRS ENSTTRP00000005110/1-634 WVPPCSPGSA KCSRE----- ---------- ---------- ------RSHS bmy_05213T0/1-394 WVPPCSPGSA KCSRERWVRL WGTGVGGGRR PGKVKARFPP PNPPWPRSHS BACU007314/1-496 ---------- ----E----- ---------- ---------- ------RSHS 601 650 ENSP00000363232/1-513 DWTQTRVLAE MLTEEEVVPS APPLPVRPPK TSPGLRGGAG VPNLAQRLEA ENSBTAP00000020826/1-648 EWTQTQVLAE MLTKEKVMPS APPLPAGSLN ASPVLRGGAA VPNLARRLEA ENSTTRP00000005110/1-634 DWIQTQVLAE MLTKEEVVPS APPLPMGPLN TSPVLRGGAA VPNLARRLEA bmy_05213T0/1-394 DWIQTQVLAE MLTKEEVVPS APPLPMGPLN TSPVLRGGAA VPNLARRLEA BACU007314/1-496 DWIQTQVLAE MLTKEEVVPS APPLPMGPLN TSPVLRGGAA VPNLARRLEA 651 700 ENSP00000363232/1-513 LRDQIGSSLR RGRSQPPCSE GA-------- ------RSPG QVLPPH ENSBTAP00000020826/1-648 LRDQIGTSLR RGRSQPPP-E GT-------- ------RSPS QALRAC ENSTTRP00000005110/1-634 LKDQIGSSLG RGRSQPPPSE GA-------- ------RSPS WVLPSC bmy_05213T0/1-394 LRDQIGSSLR RGRSQPHPSE GT-------- ---------- ------ BACU007314/1-496 LRDQISCSLR RGRSQPHPSX XXXXXXXXXX XXXXGRSENP GDHHVT