KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:12:47 2014 Check: 00 ..
Name: ENSP00000389399/1-677 Len: 1045 Check: 4181 Weight: 1.00
Name: BACU017391/1-1045 Len: 1045 Check: 3419 Weight: 1.00
Name: ENSBTAP00000020850/1-677 Len: 1045 Check: 9340 Weight: 1.00
Name: bmy_20905T0/1-362 Len: 1045 Check: 3316 Weight: 1.00
Name: ENSTTRP00000004375/1-677 Len: 1045 Check: 634 Weight: 1.00
//
1 50
ENSP00000389399/1-677 MKVLGRSFFW VLFPVLPWAV QAVEHEEVAQ RVIKLHRGRG VAAMQSRQWV
BACU017391/1-1045 MKVLGKSHLW VWLPFLHLLA SGAEHEEAVR PAIAWHRGQG AAVTQRRQWV
ENSBTAP00000020850/1-677 MKVPGRSHFW MWLPFLQLLV SGAEQEGVAG PAVELPRGRG AAVPQRRPWV
bmy_20905T0/1-362 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004375/1-677 MKVLGRSHLW VWLPFLHLLA SGAEHEEAVR HAIELHRRQG AAVTQRRQWV
51 100
ENSP00000389399/1-677 RDSCRKLSGL LRQKNAVLNK LKTAIGAVEK DVGLSDEEKL FQVHTFEIFQ
BACU017391/1-1045 LDGCRKLSGL LRQKAVVLNK LKSAVRAVEK DASLSDEEKL FQVHMFEIFQ
ENSBTAP00000020850/1-677 LDGCRRLSGL LRQKAAVLNK LEDAIRAVER DASLSDQEKL FRVHTLEIFQ
bmy_20905T0/1-362 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004375/1-677 LDGCRKLSGL LRQKAVVLNK LKSAVRAVEK DASLSDEEKL FQVHMFEIFQ
101 150
ENSP00000389399/1-677 KELNESENSV FQAVYGLQRA LQGDYKDVVN MKESSRQRLE ALREAAIKEE
BACU017391/1-1045 KELNESENSV FQAIHGLQRA LQGDYRDVVN VKESSRQRLE ALRKAAIKEE
ENSBTAP00000020850/1-677 KELNESENSV FQAVHGLQRA LQGDYRDVAN MKESSRQRLE ALREAAIKEE
bmy_20905T0/1-362 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004375/1-677 KELNESENSV FQAVHGLQRA LQGDYRDVAN VKESSRQRLE ALRKAAIKEE
151 200
ENSP00000389399/1-677 TEYMELLAAE KHQVEALKNM QHQNQSLSML DEILEDVRKA ADRLEEEIEE
BACU017391/1-1045 AEYVELLAAE KHQVEALKNM QHRNKSLSLL DEILEDVRKA ADRLEKETEE
ENSBTAP00000020850/1-677 TEYVELLAAE KHQVEALKHT QHRNKSLSLL DEILEDVRRA ADRLELEIEE
bmy_20905T0/1-362 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004375/1-677 TEYVELLAAE KHQAEVLKSM QHRNKSLSLL DEILEDVRKA ADRLEKETEE
201 250
ENSP00000389399/1-677 HAFDDNKSVK GVNFEAVLRV EEEEANSKQN ITKREVEDDL GLSMLIDSQN
BACU017391/1-1045 RAFDDNKSVR GVNFEAVLRV EEEEASSKQN LTKREVEEDL GLSMLIDSQN
ENSBTAP00000020850/1-677 HAFDDNKSVR GVNFEAVLRV EEEEADPQQN LSRREVEEDL GLSMLIDSQN
bmy_20905T0/1-362 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004375/1-677 RAFDDNRSVR GVNFEAVLRV EEDEAGSKQN LTNREVEEDL GLSMLIDSQN
251 300
ENSP00000389399/1-677 NQYILTKPRD STIPRADHHF IKDIVTIGML SLPCGWLCTA IGLPTMFGYI
BACU017391/1-1045 NQYILTKPRD ATIPRADPHL IKDIVTIGML SLPCGWLCTM IGLPTMFGYI
ENSBTAP00000020850/1-677 NQYILTRPRD ATIPRADHHL IKDLVSIVML SLPCGWLCTT IGLPTMFGYI
bmy_20905T0/1-362 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004375/1-677 NQYILTKPRD ATIPRADPHL IKDIVTIGML SLPCGWLCTT IGLPTMFGYI
301 350
ENSP00000389399/1-677 ICGVLLGPSG LNSIKSIVQV ETLGEFGVFF TLFLVGLEFS PEKLRKVWKI
BACU017391/1-1045 ICGVLLGPSG LNSIKSVVQV ETLGEFGVFF TLFLVGLEFS PEKLRKVWKI
ENSBTAP00000020850/1-677 ICGVLLGPSG LNSIKSIVQV ETLGEFGVFF TLFLVGLEFS PEKLRKVWKI
bmy_20905T0/1-362 ---------- -----SVVQV ETLGEFGVFF TLFLVGLEFS PEKLRKVWKI
ENSTTRP00000004375/1-677 ICGVLLGPSG LNSIKSVVQV ETLGEFGVFF TLFLVGLEFS PEKLRKVWKI
351 400
ENSP00000389399/1-677 SLQGPCYMTL LMIAFGLLWG HLLRIKPTQS VFISTCLSLS STPLVSRFLM
BACU017391/1-1045 SLQGPCYMTL LMVAFGLVWG HLLQIRPTQS VFISTCLSLS STPLVSKFLV
ENSBTAP00000020850/1-677 SLQGPCYMTL LMVAFGLVWG HLLQIRPTQS VFISACLSLS STPLVSKFLV
bmy_20905T0/1-362 SLQGPCYMTL LMVAFGLVWG HLLQIRPTQS VFISTCLSLS STPLVSKFLV
ENSTTRP00000004375/1-677 SLQGPCYMTL LMVAFGLLWG HLLQIRPTQS VFISTCLSLS STPLVSKFLV
401 450
ENSP00000389399/1-677 GSARGDKEGD IDYSTVLLGM LVTQDVQLGL FMAVMPTLIQ AGASASSSIV
BACU017391/1-1045 GSTRSDREGD IDYGAVLLGM LVTQDVQLGL FIAVLPTLIQ AGAGAHASVA
ENSBTAP00000020850/1-677 GSARSDKEGD IDYGALLLGM LVTQDVQLGL FIAILPTLIQ AGAGAHASVA
bmy_20905T0/1-362 GSTRSDKEGD IDYGAVLLGM LVTQDVQLGL FIAVLPTLIQ AGAGAHASVA
ENSTTRP00000004375/1-677 GSARSDKEGD IDYGAVLLGM LVTQDVQLGL FMAVLPTLIQ AGAGAHASVA
451 500
ENSP00000389399/1-677 VEVLRILVLI GQILFSLAAV FLLCLVIKKY LIGPYYRKLH MESKGNKEIL
BACU017391/1-1045 MEILRVLGLV GQVLFSLAAV LLFCLVVRTY LVGPYCRKLH AESKGNKEIL
ENSBTAP00000020850/1-677 MEALRLLALV GQVLFSLAAV LLVCLLVRTY LVGPYCRKLH VESKGNKEIL
bmy_20905T0/1-362 MEILRVLGLV GQVLFSLAAV LLFCLVVRTY LVGPYCRKLH AESKGNKEIL
ENSTTRP00000004375/1-677 MEILRVLGLV GQVLFSLAAV LLFCLVVRTY LVGPYCRRLH AESKGNKEVL
501 550
ENSP00000389399/1-677 ILGISAFIFL MLTVTELLDV SMELGCFLAG ALVSSQGPVV TEEIATSIEP
BACU017391/1-1045 ILGISAFIFL MLTVTELLDV SMELGCFLAG ALVSSQGHVV AEEVVSYVEP
ENSBTAP00000020850/1-677 VLGVSAFTFL MLTVTELLGV SMELGCFLAG ALVSSQGHAA AEEVVSCVEP
bmy_20905T0/1-362 ILGISAFIFL MLTVTELLDV SMELGCFLAG ALVSSQGHVV AEEVVSYVEP
ENSTTRP00000004375/1-677 ILGISAFTFL MLTVTELLDV SMELGCFLAG ALVSSQGHVV AEEVVSCVEP
551 600
ENSP00000389399/1-677 IRDFLAIVFF ASIGLHVFPT FVAYELTVLV FLTLSVVVMK FLLAALVLSL
BACU017391/1-1045 VRDFLAIVFF ASIGLHVFPT FVLYELTVLL VLTLSVVVMK FVLAALVLSL
ENSBTAP00000020850/1-677 VRDFLAIVFF ASIGLHVFPT FVLYELTVLL VLTLSVVVMK FVLAALVLSL
bmy_20905T0/1-362 VRDFLAIVFF ASIGLHVFPT FVLYELTVLL VLTLSVVVMK FVLAALVLSL
ENSTTRP00000004375/1-677 VRDFLAIVFF ASIGLHVFPT FVLRELAVLL ALTLSVVAMK FALAALVLSL
601 650
ENSP00000389399/1-677 ILPRSSQYIK WIVSAGLAQV SEFSFVLGSR ARRAGVISRE VYLL------
BACU017391/1-1045 LLPKTSQYVK WIVAAGLAQV SEFSLVLGSR ARRARVISRE AGLIEANGEL
ENSBTAP00000020850/1-677 LLPKTSQYVK WIVAAGLAQV SEFALVLGSR ARRARVISRE VYLL------
bmy_20905T0/1-362 LLPKTSQYVK WIVAAGLAQV SEFSLVLGSR ARRARVISRE VYLL------
ENSTTRP00000004375/1-677 LLPKTSQYVK WIVAAGLAQV SEFSLVLGSR ARRARIISRE VYLL------
651 700
ENSP00000389399/1-677 ---------- ---------- ---------- ---------- ----------
BACU017391/1-1045 KVFIDQNLSP GKGVVSLVAV HPSTVNTLGK QLLPKTFGQS NVNIAQQVVI
ENSBTAP00000020850/1-677 ---------- ---------- ---------- ---------- ----------
bmy_20905T0/1-362 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004375/1-677 ---------- ---------- ---------- ---------- ----------
701 750
ENSP00000389399/1-677 ---------- ---------- ---------- ---------- ----------
BACU017391/1-1045 GTPQRPAAPN TIVVGSPHTP NTHFVSQNQP SDPSPWSAGK RNRKGEKNGK
ENSBTAP00000020850/1-677 ---------- ---------- ---------- ---------- ----------
bmy_20905T0/1-362 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004375/1-677 ---------- ---------- ---------- ---------- ----------
751 800
ENSP00000389399/1-677 ---------- ---------- ---------- ---------- ----------
BACU017391/1-1045 GLRHFSMKVC EKVQRKGTTS YNEVADELVA EFSAADNHIL PNESAYDQKN
ENSBTAP00000020850/1-677 ---------- ---------- ---------- ---------- ----------
bmy_20905T0/1-362 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004375/1-677 ---------- ---------- ---------- ---------- ----------
801 850
ENSP00000389399/1-677 ---------- -ILSVTTLS- ---------- ---------- ----------
BACU017391/1-1045 IRRRVYDALN VLMAMNIISK EKKEIRWIGL PTNSAQECQN LEVERQRRLE
ENSBTAP00000020850/1-677 ---------- -ILSVTTLS- ---------- ---------- ----------
bmy_20905T0/1-362 ---------- -ILSVTTLS- ---------- ---------- ----------
ENSTTRP00000004375/1-677 ---------- -ILSVTTLS- ---------- ---------- ----------
851 900
ENSP00000389399/1-677 ---------- -LLLAPVLWR AAITRC---- --VPRPERRS SL--------
BACU017391/1-1045 RIKQKQSQLQ ELILQQIAFK NLVERNRRAE QQASRPPPAN SAIRLPFIIV
ENSBTAP00000020850/1-677 ---------- -LLLAPLLWR AAVARC---- --APRPERRS SL--------
bmy_20905T0/1-362 ---------- -LLLAPLLWR AAVARC---- --APRPERRS SF--------
ENSTTRP00000004375/1-677 ---------- -LLLAPLLWR AAVARC---- --APRPERRS SL--------
901 950
ENSP00000389399/1-677 ---------- ---------- ---------- ---------- ----------
BACU017391/1-1045 NTSKKTVIDC SISNDKFEYL FNFDNTFEIH DDIEVLKRMG MACGLESGSC
ENSBTAP00000020850/1-677 ---------- ---------- ---------- ---------- ----------
bmy_20905T0/1-362 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004375/1-677 ---------- ---------- ---------- ---------- ----------
951 1000
ENSP00000389399/1-677 ---------- ---------- ---------- ---------- ----------
BACU017391/1-1045 SADDLKVARS LVPKALEPYV TEMAQGSLGG VFVTSAVSTA NGTRLSASDL
ENSBTAP00000020850/1-677 ---------- ---------- ---------- ---------- ----------
bmy_20905T0/1-362 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004375/1-677 ---------- ---------- ---------- ---------- ----------
1001 1050
ENSP00000389399/1-677 ---------- ---------- ---------- ---------- -----
BACU017391/1-1045 ANGADGALAT SSSGSQYSGS RVETPVSYVG EEDEDEDFHE DEEED
ENSBTAP00000020850/1-677 ---------- ---------- ---------- ---------- -----
bmy_20905T0/1-362 ---------- ---------- ---------- ---------- -----
ENSTTRP00000004375/1-677 ---------- ---------- ---------- ---------- -----