KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:12:50 2014 Check: 00 ..
Name: ENSP00000253354/1-484 Len: 524 Check: 4213 Weight: 1.00
Name: ENSBTAP00000020875/1-473 Len: 524 Check: 7527 Weight: 1.00
Name: ENSTTRP00000010302/1-481 Len: 524 Check: 8915 Weight: 1.00
Name: bmy_00549T0/1-335 Len: 524 Check: 511 Weight: 1.00
Name: BACU015563/1-468 Len: 524 Check: 6462 Weight: 1.00
//
1 50
ENSP00000253354/1-484 MAGPWTFTLL CGLLAATLIQ ATLSPTAVLI LGPKVIKE-- ----------
ENSBTAP00000020875/1-473 MAYPWTFTFL CGLLAANLVG ATLSPPVVLS LSTEVIKQ-- ----------
ENSTTRP00000010302/1-481 MASPRTFTFL CGLLAANLVG ATLSPPAVLS LGPEVIEQ-- ----------
bmy_00549T0/1-335 MASPRTFTFL CGLLTANLVG ATLSPPAVLS LGPEVIKQXQ VALSDVPSQP
BACU015563/1-468 MASPRTFTFL CGLLAANLVG ATLSPPAVLS LSSEVIKQ-- ----------
51 100
ENSP00000253354/1-484 ---------- ---------- --KLTQELKD HNATSILQQL PLLSAMREKP
ENSBTAP00000020875/1-473 ---------- ---------- --MLAQKLKN HDVTNTLQQL PLLTAMEEES
ENSTTRP00000010302/1-481 ---------- ---------- --RLTQKLKD HDAVDTLRQL PLLSAMKKES
bmy_00549T0/1-335 GAPTKPSFLP LLLDPNPWDL SPVLTQKLKD HDAVNTLQQL PLLSAMKKEL
BACU015563/1-468 ---------- ---------- --MLTQKLKD HDAINTLQQL PLLSAMK-ES
101 150
ENSP00000253354/1-484 AGGIPVLGSL VNTVLKHIIW LKVITANILQ LQVKPSANDQ ELLVKIPLDM
ENSBTAP00000020875/1-473 SRGI--FGNL VKSILKHILW MKVTSASIGQ LQVQPLANGR QLMVKAPLDV
ENSTTRP00000010302/1-481 AGGI--FGSL VRSILKHIVQ LKVTSASIHQ LQVQPLHDGR ELMINVPLDM
bmy_00549T0/1-335 XGGI--FSSL VKSILKHIIW ---------- ---------- ----------
BACU015563/1-468 AGGI--FSRL VKSILKHIIW LKVTSASILQ LQVQPLDDGR ELMIHVPLDM
151 200
ENSP00000253354/1-484 VAGFNTPLVK TIVEFHMTTE AQATIRMDTS ASGPTRLVLS DCATSHGSLR
ENSBTAP00000020875/1-473 VAGFNVPLFK TVVELHVEVE AQAIIHVETR EKDHARLVLS ECSNTGGSLR
ENSTTRP00000010302/1-481 VAGFNTPLVK TIVELHMEVE AQAIIHVETS ERDHSRLVLS NCSNSHGRPR
bmy_00549T0/1-335 ------PLVK TIVELHMEVE AQAIIHVETG ERDHTRL--- ----------
BACU015563/1-468 VAGFNTPLVK TIVELHMEVE AQAIIHVETG ERNHTRLVLS DCSNTRGRLR
201 250
ENSP00000253354/1-484 IQLLHKLSFL VNALAKQVMN LLVPSLPNLV KNQLCPVIEA SFNGMYADLL
ENSBTAP00000020875/1-473 VSLLHKLSFL LKCLADKVIS LLTPALPKLV KSELCPVLKA GFEDMRGELL
ENSTTRP00000010302/1-481 ISLLHKRSFL LNSLADKVIS LLVPALPKLV KSELCPVIEA AFEDMREDLL
bmy_00549T0/1-335 ---------- ---------- ---------- ---LCPVIKA AFEDMRADLL
BACU015563/1-468 ISLLHKLSFL LNSLADKVIR LLVPALPKLV KSELCPVIKA AFEDMCADLL
251 300
ENSP00000253354/1-484 QLVKVPISLS IDRLEFDLLY PAIKGDTIQL YLGAKLLDSQ GKVTKWFNNS
ENSBTAP00000020875/1-473 NLTKVPMSLN SEHLKLDFIS PVIDHSVVHL ILGARLFNSE GKVTKLFNVA
ENSTTRP00000010302/1-481 NLTNVPVSLN SDHLEFDFMS PAIDHNVVHL ILGAKLVDSE GKVTKLFNDS
bmy_00549T0/1-335 NLTKVPVSLN SDHLEFDFMS PAIDHNVVHL ILGAKLVDSE GKVTKLFNDS
BACU015563/1-468 NLTKVPVSLN SDHLEFDFMS PAIDHDVVHL ILGAKLVDSE GKVTKLFNDS
301 350
ENSP00000253354/1-484 AASLTMPTLD NIPFSLIVSQ DVVKAAVAAV LSPEEFMVLL DSVLPESAHR
ENSBTAP00000020875/1-473 GDSLNLPTLN QTPFRLTVRK DVVVAIIAAL IHSGKLTVLL DYVLPEVARQ
ENSTTRP00000010302/1-481 VDSLNLPSLY HSPFSLTMRK DIVNAAVAAL LPPEELMVLL DYVLPETARR
bmy_00549T0/1-335 VDSLNLPSLH HTPFSLTMRK DVVNAAVAAL LPPGELMVLL DYVLPEMARR
BACU015563/1-468 VDSLNLPSLH YTPFSLTMRK DVVNAAVAAL LPPEELMVLL DYVLPETARR
351 400
ENSP00000253354/1-484 LKSSIGLINE KAADKLGSTQ IVKILTQDTP EFFIDQGHAK VAQLIVLEVF
ENSBTAP00000020875/1-473 LRSSIKVIDE TAAAQLGPTQ IVKIMSQTTP MLILDQGNAK VAQLIVLEIF
ENSTTRP00000010302/1-481 LKSSIKVISE KAANQLGRTQ IVKILTQKTP ELLADQGHAK VAQLIMLEVF
bmy_00549T0/1-335 LKSSIKVISE KAANQLGPTQ IVKILTQETP ELFVDQGNAK VAQLIMLEVF
BACU015563/1-468 LKSSIKVISE KAANQLGPTQ IVKILTQENP ELFVDQGNAK VAQLIMLEVF
401 450
ENSP00000253354/1-484 PSSEALRPLF TLGIEASSEA QFYTKGDQLI LNLNNISSDR IQLMNSGIGW
ENSBTAP00000020875/1-473 ATDKDSRPLF TLGIEASSDI QFYVEDGLLV FSFNEIRADR IHLMNSDIGV
ENSTTRP00000010302/1-481 ATNEAYHPFF TLGIEATSEA QFYTRGDLLM LYFNKIXXXX XXXXXXXXXX
bmy_00549T0/1-335 ATNEAYRPFF TLG------- ---------- ---------- ----------
BACU015563/1-468 ATNEAYRPFF TLGIEATSEA QFYTRGDLFM LNFNKISSDR IHLMNSAIGL
451 500
ENSP00000253354/1-484 FQPDVLKNII TEIIHSILLP NQNG------ KLRSGVPVSL VKALGFEAAE
ENSBTAP00000020875/1-473 FNPKLLNNIT TKILTSILLP NENG------ KLRSGIPVSM VKNLGFKSIS
ENSTTRP00000010302/1-481 XXPELLKDFT TKILASVLLP NENG------ KLRSGISVSM VKALGFEAVS
bmy_00549T0/1-335 ---------- --IVSSVV-- ---------- ---------- ----------
BACU015563/1-468 FNPELLKDII TKILASVLLP NENESPGPVK KKEGGLLCQP PSDLHPETQA
501 550
ENSP00000253354/1-484 SSLTKDALVL TPASLWKPSS PVSQ
ENSBTAP00000020875/1-473 LSLTKEALVV TQASS----- ----
ENSTTRP00000010302/1-481 WSLTEDALVV TPASS-NLSF PLSQ
bmy_00549T0/1-335 ---------- ---------- ----
BACU015563/1-468 PSVHP----- ---------- ----