KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:54 2014 Check: 00 .. Name: ENSP00000293677/1-756 Len: 756 Check: 9710 Weight: 1.00 Name: ENSBTAP00000020887/1-716 Len: 756 Check: 6780 Weight: 1.00 Name: ENSTTRP00000009051/1-737 Len: 756 Check: 9975 Weight: 1.00 Name: bmy_13749T0/1-659 Len: 756 Check: 2017 Weight: 1.00 Name: BACU002501/1-754 Len: 756 Check: 7319 Weight: 1.00 // 1 50 ENSP00000293677/1-756 MPLRPGSLVP EGAGFPKMAA DVSVTHRPPL SPKSGAEVEA GDAAERRAPE ENSBTAP00000020887/1-716 ---------- -------MAA DVSVTHRPPL SPEAGAEVEA GDAAERRVPE ENSTTRP00000009051/1-737 ---------- -------MAA DVSVTHRPPL SPEAGAEVEA GDVAERRAPE bmy_13749T0/1-659 ---------- -------MAA DVSVTHRPPL SPEAGAEVEA DDVAERRAPE BACU002501/1-754 MPLRLGSLVP EGAGFPKMAA DVSVTHRPPL SPEAGAEVEA DDVAERRAPE 51 100 ENSP00000293677/1-756 EELPPLDPEE IRKRLEHTER QFRNRRKILI RGLPGDVTNQ EVHDLLSDYE ENSBTAP00000020887/1-716 EELPPLDPEE IRKRLEHTER QFRNRRKILI RGLPGDVTNQ EVHDLLSDYE ENSTTRP00000009051/1-737 EELPPLDPEE IRKRLEHTER QFRNRRKILI RGLPGDVTNQ EVHDLLGDYE bmy_13749T0/1-659 EELPPLDPAE IRKRLEHTER QFRNRRKILI RGLPGDVTNQ EVHDLLGDYE BACU002501/1-754 EELPPLDPEE IRKRLEHTER QFRNRRKILI RGLPGDVTNQ EVHDLLGDYE 101 150 ENSP00000293677/1-756 LKYCFVDKYK GTAFVTLLNG EQAEAAINAF HQSRLREREL SVQLQPTDAL ENSBTAP00000020887/1-716 LKYCFVDKYK GTAFVTLLNG EQAEAAISAF HQSRLREREL SVQLQPTDAL ENSTTRP00000009051/1-737 LKYCFVDKYK GTAFVTLLNG EQAEAAISAF HQSRLREREL SVQLQPTDAL bmy_13749T0/1-659 LKYCFVDKYK GTAFVTLLNG EQAEAAISAF HQSRLREREL SVQLQPTDAL BACU002501/1-754 LKYCFVDKYK GTAFVTLLNG EQAEAAISAF HQSRLREREL SVQLQPTDAL 151 200 ENSP00000293677/1-756 LCVANLPPSL TQQQFEELVR PFGSLERCFL VYSERTGQSK GYGFAEYMKK ENSBTAP00000020887/1-716 LCVANLPPSL TQQQFEELVR PFGSLERCFL VYSERTGHSK GYGFAEYMKK ENSTTRP00000009051/1-737 LCVANLPPSL TQQQFEELVR PFGSLERCFL VYSERTGHSK GYGFAEYMKK bmy_13749T0/1-659 LCVANLPPSL TQQQFEELVR PFGSLERCFL VYSECTGHSK GYGFAEYMKK BACU002501/1-754 LCVANLPPSL TQQQFEELVR PFGSLERCFL VYSECTGHSK GYGFAEYMKK 201 250 ENSP00000293677/1-756 DSAARAKSDL LGKPLGPRTL YVHWTDAGQL TPALLHSRCL CVDRLPPGFN ENSBTAP00000020887/1-716 DSAARAKSDL LGKPLGPRTL YVHWTDAGQL TPALLHSRCL CVDRLPPGFS ENSTTRP00000009051/1-737 DSAARAKSDL LGKPLGPRTL YVHWTDAGQL TPSLLHSRCL CVDRLPPGFS bmy_13749T0/1-659 DSAARAKSDL LGKPLGPRTL YVHWTDAGQL TPSLLHSRCL CVDRLPPGFS BACU002501/1-754 DSAARAKSDL LGKPLGPRTL YVHWTDAGQL TPSLLHSRCL CVDRLPPGFS 251 300 ENSP00000293677/1-756 DVDALCRALS AVHSPTFCQL ACGQDGQLKG FAVLEYETAE MAEEAQQQAD ENSBTAP00000020887/1-716 DVDALRRALS AVHTPTFCQL AYGQDGQLKG FAVLEYETAE MAEEAQQRAD ENSTTRP00000009051/1-737 DVDALRRALS AVHTPTFCQL AYGQDGQLKG FAVLEYETAE MAEEAQQRAD bmy_13749T0/1-659 DVDALRRALS AVHAPTFCQL AYGQDGQLKG FAVLEYETAE MAEEAQQRAD BACU002501/1-754 DVDALRRALS AVHAPTFCQL AYGQDGQLKG FAVLEYETAE MAEEAQQRAD 301 350 ENSP00000293677/1-756 GLSLGGSHLR VSFCAPGPPG RSMLAALIAA QATALNRGKG LLPEPNILQL ENSBTAP00000020887/1-716 GLALGGSHLR VSFCAPGPPG RSMLAALIAA QATALNRGKG LLPEPNILQL ENSTTRP00000009051/1-737 GLALGGSHLR VSFCAPGPPG RSMLAALIAA QATALNRGKG LLPEPSILQL bmy_13749T0/1-659 GLALGGSHLR VSFCAPGPPG RSMLAALIAA QATALNRGKG LLPEPNILQL BACU002501/1-754 GLALGGSHLR VSFCAPGPPG RSMLAALIAA QATALNRGKG LLPEPNILQL 351 400 ENSP00000293677/1-756 LNNLGPSASL QLLLNPLLHG SAGGKQGLLG APPAMPLLNG PALSTALLQL ENSBTAP00000020887/1-716 LNNLGPSASL QLLLNPLLHG GAGGKQGLLG APPAVPLLNG PALSTALLQL ENSTTRP00000009051/1-737 LSNLGPSASL QLLLNPLLHG GTGGKQGLLG APPAMPLLNG PALSTALLHL bmy_13749T0/1-659 LNNLGPSASL QLLLNPLLHG GAGGKQGLLG APPAMPLLNG PALSTALLQL BACU002501/1-754 LNNLGPSASL QLLLNPLLHG GAGGKQGLLG APPAMPLLNG PALSTALLQL 401 450 ENSP00000293677/1-756 ALQTQGQKKP GILGDSPLGA LQPGAQPANP LLGELPAGGG LPPELPPRRG ENSBTAP00000020887/1-716 ALQTQSQKKP GILGDSPLGT LQPGAQPANP LLGELSAGGG LPPELPPRRG ENSTTRP00000009051/1-737 ALQTQSXXKP GILGDSPLGT LQSGAQPASP LLGELSAGGG LPPELPSRRG bmy_13749T0/1-659 ALQTQSQKKP GILGDSPLGT LQPGAQPANP LLGELSAGGG LPPELPPRRG BACU002501/1-754 ALQTQSQKKP GILGDSPLGT LQPGAQPANP LLGELSAGGG LPPELPPRRG 451 500 ENSP00000293677/1-756 KPPPLLPSVL GPAGGDREAL GLGPPAAQLT PPPAPVGLRG SGLRGLQKDS ENSBTAP00000020887/1-716 KPPPLLPPLL GPSGGDREPM GLGPPAPQLT PPPAPVGLRG AGLRGLQKDS ENSTTRP00000009051/1-737 KPPPLLPPLL GPSGGDREPM GLGPPAPQLT PPPAPVGLRG TGLRGLQKDS bmy_13749T0/1-659 KPPPLLPPLL GPSGGDREPM GLGPPAPQLT PPPAPVGLRG TGLRGLQKDS BACU002501/1-754 KPPPLLPPLL GPSGGDREPM GLGPPAPQLT PPPAPVGLRG TGLRGLQKDS 501 550 ENSP00000293677/1-756 GPLPTPPGVS LLGEPPKDYR IPLNPYLNLH SLLPASNLAG KEARGWGGAG ENSBTAP00000020887/1-716 GPLPTPPGVS LLGEPPKDFR IPLNPYLNLH SLLPASNLA- --APGGGG-- ENSTTRP00000009051/1-737 GPLPTATGVS LLGEPPKDFR IPLNPYLNLH SLLPASNLAG KEARGWGGAG bmy_13749T0/1-659 GPLPTPTGVS LLGEPPKDFR IPLNPYLNLH SLLPASNLA- ---------- BACU002501/1-754 GPLPTPTGVS LLGEPPKDFR IPLNPYLNLH SLLPASNLAG KEARGWGGAG 551 600 ENSP00000293677/1-756 RSRRPAEGPP TNPPAPGGGS SSSKAFQLKS RLLSPLSSAR LPPEPGLSDS ENSBTAP00000020887/1-716 ---------- ------GGG- GSSKAFQLKS RLLSPLSSAR LPPEPGLPDS ENSTTRP00000009051/1-737 RSRRPAEGPL PNPPAPGGG- GSSKAFQLKS RLLSPLTSAR LPPDPGLPDS bmy_13749T0/1-659 ---------- ----APGGG- GSSKAFQLKS RLLSPLTSAR LPPDPGLPDS BACU002501/1-754 RSRRPAEGPL PNPPAPGGG- GSSKAFQLKS RLLSPLTSAR LPPDPGLPDS 601 650 ENSP00000293677/1-756 YSFDYPSDMG PRRLFSHPRE PALGPHGPSR HKMSPPPSGF GERSSGGSGG ENSBTAP00000020887/1-716 YGFEYPSDVG PRRLFSHPRE PTLGPHGPSR HRMSPPPGGF GERGVGG-GG ENSTTRP00000009051/1-737 YGFDYPSDVG PRRLFSHPRE PTLGPHGLSR HKMSPPPSGF GERGGGG-GS bmy_13749T0/1-659 YGFDYPS--- ---------- ---------- --MSPPPSGF GERGGGG-GG BACU002501/1-754 YGFDYPSDVG PRRLFSHPRE PTLGPHGPSR HKMSPPPSGF GERGGGG-GG 651 700 ENSP00000293677/1-756 GPLSHFYSGS PTSYFTSGLQ AGLKQSHLSK AIGSSPLGSG EGLLGLSPGP ENSBTAP00000020887/1-716 GPLSHLYAGS PTSCFTSGLQ AGLRQSHLNK VVGSSPLGSG EGLLGLGPGP ENSTTRP00000009051/1-737 GPLSHFYSGS PTSYFTSGLQ AGLKQSHLNK AVGSSPLGSG EGLLGLGPGP bmy_13749T0/1-659 GPVSHFCLGS PTSYFTSGLQ AGLKQSHLN- ---------- ---------- BACU002501/1-754 GPVSHFCLGS PTSYFTSGLQ AGLKQSHLNK AVGSSPLGSG EGLLGLGPGP 701 750 ENSP00000293677/1-756 NGHSHLLKTP LGGQKRSFAH LLPSPEPSPE GSYVGQHSQG LGGHYADSYL ENSBTAP00000020887/1-716 NGHSHLLKTP LGGQKRSFAH LLPSPEPSPE GSYVGQHSQG LGGHYADSYL ENSTTRP00000009051/1-737 NGHSHLLKTP LGGQKRSFAH LLPSPEPSPE GSYVGQHSQG LGGHYADSYL bmy_13749T0/1-659 -------KTP LGGQKRSFAH LLPSPEPSPE GSYVGQHSQG LGGHYADSYL BACU002501/1-754 NGHSHLLKTP LGGQKRSFAH LLPSPEPSPE GSYVGQHSQG LGGHYADSYL 751 800 ENSP00000293677/1-756 KRKRIF ENSBTAP00000020887/1-716 KRKRIF ENSTTRP00000009051/1-737 KRKRIF bmy_13749T0/1-659 KRKRIF BACU002501/1-754 KRKRIF