KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:55 2014 Check: 00 .. Name: ENSTTRP00000005833/1-1026 Len: 1068 Check: 8040 Weight: 1.00 Name: bmy_16120T0/1-622 Len: 1068 Check: 2286 Weight: 1.00 Name: ENSP00000275732/1-1035 Len: 1068 Check: 7857 Weight: 1.00 Name: BACU012070/1-903 Len: 1068 Check: 4308 Weight: 1.00 Name: ENSBTAP00000020895/1-1036 Len: 1068 Check: 7114 Weight: 1.00 // 1 50 ENSTTRP00000005833/1-1026 ---------- ---------- MAAETLNFGP EWLRALSSGG SVASPPPSPA bmy_16120T0/1-622 ---------- ---------- MAAETLNFGP EWLRALSSGG SVASPPPSPA ENSP00000275732/1-1035 ---------- ---------- MAAETLNFGP EWLRALSGGG SVASPPPSPA BACU012070/1-903 MPLAAAFVAM VAHHDTPSST MAAETLNFGP EWLRALSSGG SVASPPPSPA ENSBTAP00000020895/1-1036 ---------- ---------- MAAETLNFGP EWLRALSSGG SVASPPPSPA 51 100 ENSTTRP00000005833/1-1026 MPKYKLADYR YGREEMLALY VKESKVPDEL QDKEFAAVLQ EEPLQPLALE bmy_16120T0/1-622 MPKYKLADYR YGREEMLALY VKESKVPDEL QDKEFAAVLQ EEPLQPLALE ENSP00000275732/1-1035 MPKYKLADYR YGREEMLALY VKENKVPEEL QDKEFAAVLQ DEPLQPLALE BACU012070/1-903 MPKYKLADYR YGREEMLALY VKESKVPDEL QDKEFAAVLQ EEPLQPLALE ENSBTAP00000020895/1-1036 MPKYKLADYR YGREEMLALY VKESKVPDEL QDKEFAALLQ EEPLQPLALE 101 150 ENSTTRP00000005833/1-1026 PLTEEEQRNF SLSVNSVAVL RLMGKGAGPP LGGASRGRGS TRSRGRGRGD bmy_16120T0/1-622 PLTEEEQRNF SLSVNSVAVL RLMGKGAGPP LGGASRGRGS TRSRGRGRGD ENSP00000275732/1-1035 PLTEEEQRNF SLSVNSVAVL RLMGKGAGPP LAGTSRGRGS TRSRGRGRGD BACU012070/1-903 PLTEEEQVG- --PCRQRRVS TVEGAGVGKA ---------- ----GRGRGD ENSBTAP00000020895/1-1036 PLTEEEQRNF SLSVNSVAVL RLMGKGAGPP LGGASRGRGS TRSRGRGRGD 151 200 ENSTTRP00000005833/1-1026 SCFYQRSIEE GDGAFGRNPR EIQRSQSWDD RSERRFEKSA RRDG----AR bmy_16120T0/1-622 SCFYQRSIEE GDGAFGRNPR EIQRSQSWDD RSERRFEKSA RRDG----AR ENSP00000275732/1-1035 SCFYQRSIEE GDGAFGRSPR EIQRSQSWDD RGERRFEKSA RRDG----AR BACU012070/1-903 SCFYQRSIEE GDGAFGRNPR EIQRSQSWDD RSERRFEKSA RRDGGMESAR ENSBTAP00000020895/1-1036 SCFYQRSIEE GDGAFGRNPR EIQRSQSWDD RGERRFEKSA RRDG----AR 201 250 ENSTTRP00000005833/1-1026 SGFDEGGAGP RKEHARSDSE NWRSLREEQE EEEEGSWRLG AGPRRDGDRW bmy_16120T0/1-622 SGFDEGGAGP RKEHARSDSE NWRSLREEQE EEEEGSWRLG AGPRRDGDRW ENSP00000275732/1-1035 CGFEEGGAGP RKEHARSDSE NWRSLREEQE EEEEGSWRLG AGPRRDGDRW BACU012070/1-903 SGFDEGGAGP RKEHARSDSE NWRSLREEQE EEEEGSWRLG AGPRRDGDRW ENSBTAP00000020895/1-1036 SGFDEGGAGP RKEHARSDSE NWRSLREEQE EEEEGSWRLG AGPRRDGDRW 251 300 ENSTTRP00000005833/1-1026 RSASPDGGPR SAGWREHGDR RRKFEFDLRG DRGGCGEEEG RGGGGGSHLR bmy_16120T0/1-622 RSASPDGGPR SAGWREHGDR RRKFEFDLRG DRGGCGEEEG RGGGGSSHLR ENSP00000275732/1-1035 RSASPDGGPR SAGWREHGER RRKFEFDLRG DRGGCGEEEG RGGGGSSHLR BACU012070/1-903 RSASPDGGPR SAGWREHGDR RRKFEFDLRG DRGGSGEEEG RGGGGSSHLR ENSBTAP00000020895/1-1036 RSTSPDGGPR SAGWREHGDR RRKFEFDLRG DRGGCGEEEG RGGGGSSHLR 301 350 ENSTTRP00000005833/1-1026 RGRGPDGFDD DKDGLPEWCL DDEDEEMGTF DASGAFLPVK KGPKEPIPEE bmy_16120T0/1-622 RCRGPDGFDD DKDGLPEWCL DDEDEEMGTF DASGAFLPLK KGPKEPIPEE ENSP00000275732/1-1035 RCRAPEGFEE DKDGLPEWCL DDEDEEMGTF DASGAFLPLK KGPKEPIPEE BACU012070/1-903 RCRGPDGFDD DKDGLPEWCL DDEDEEMGTF DASGAFLPLK KGPKEPIPEE ENSBTAP00000020895/1-1036 RCRGPDGFDD DKDGLPEWCL DDEDEEMGTF DASGAFLPLK KGPKEPIPEE 351 400 ENSTTRP00000005833/1-1026 QELDFQGLEE EEEEPSEGLD EEGPEAXXXX XXXXXXXXXX XXXXXXXXXX bmy_16120T0/1-622 QELDFQGLEE EEEEPSEGLD EEGPEAGGKE LTPLPPQEEK SSSPSPLPSL ENSP00000275732/1-1035 QELDFQGL-E EEEEPSEGLE EEGPEAGGKE LTPLPPQEEK SSSPSPLPTL BACU012070/1-903 QELDFQGLEE EEEEPSEGLD EEGPEAGGKE LTPLPPQEEK SSSPPPLPSL ENSBTAP00000020895/1-1036 QELDFQGLEE EEEEPSEGLD EEGPEAGGKE LTPLPPQEEK SSSPSPLPTL 401 450 ENSTTRP00000005833/1-1026 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16120T0/1-622 GPLWGGNGEG DDAVEKDLPA AEGDDMRAVQ LSPGVGSPPG PPGDLEDDEG ENSP00000275732/1-1035 GPLWGTNGDG DETAEKEPPA AE-DDIRGIQ LSPGVGSSAG PPGDLEDDEG BACU012070/1-903 GPLWGGNGEG DDAVEKDLPA AEGDDMRAVQ LSPGVGSPPG PPGDLEDDEG ENSBTAP00000020895/1-1036 GPLWGANGEG DDPVEKDLPA AEGEDMRGMQ LSPGAGSPPG PP-DLEDDEG 451 500 ENSTTRP00000005833/1-1026 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16120T0/1-622 LKHLQQEAEK LVASLQDSSL EEEQFTAAIQ AQGLRHSAAA TALPLSHGAA ENSP00000275732/1-1035 LKHLQQEAEK LVASLQDSSL EEEQFTAAMQ TQGLRHSAAA TALPLSHGAA BACU012070/1-903 LKHLQQEAEK LVASLQDSSL EEEQFTAAIQ AQGLRHSAAA TALPLSHGAA ENSBTAP00000020895/1-1036 LKHLQQEAEK LVASLQDSSL EEEQFTAAIQ AQGLRHSAAA TALPLSHGAA 501 550 ENSTTRP00000005833/1-1026 XXXXXXXXXX XXXXXXT--Q MAEWL-AGF- --SMLLKRGC DEGFQPLGEV bmy_16120T0/1-622 RKWFYKDPQG EIQGPFTTQE MAEWFQAGYF SMALLVKRGC DEGFQPLGEV ENSP00000275732/1-1035 RKWFYKDPQG EIQGPFTTQE MAEWFQAGYF SMSLLVKRGC DEGFQPLGEV BACU012070/1-903 RKWFYKDPQG EIQGPFTTQE MAEWFQAGYF SMALLVKRGC DEGFQPLGEV ENSBTAP00000020895/1-1036 RKWFYKDPQG EIQGPFTTQE MAEWFQAGYF SMALLVKRGC DEGFQPLGEV 551 600 ENSTTRP00000005833/1-1026 IKMWGRVPFA PGPSPPPLLG NMDQERLKKQ QELAAAALYQ QLQHQQFLQL bmy_16120T0/1-622 IKMWGRVPFA PGPSPPPLL- ---------- ---------- ---------- ENSP00000275732/1-1035 IKMWGRVPFA PGPSPPPLLG NMDQERLKKQ QELAAAALYQ QLQHQQFLQL BACU012070/1-903 IKMWGRVPFA PGPSPPPLLG NMDQERLKKQ QELAAAALYQ QLQHQQFLQL ENSBTAP00000020895/1-1036 IKMWGRVPFA PGPSPPPLLG NMDQERLKKQ QELAAAALYQ QLQHQQFLQL 601 650 ENSTTRP00000005833/1-1026 VG-SRQLPQC ALREKAALGD LPPPP----- --QQQLTAFL QQLQALKPPR bmy_16120T0/1-622 ---------- ---------- ---------- ---------- ---------- ENSP00000275732/1-1035 VS-SRQLPQC ALREKAALGD LTPPPPPPPQ QQQQQLTAFL QQLQALKPPR BACU012070/1-903 VG-SRQLPQC ALREKAALGD LPPPP----- --QQQITAFL QQLQALKP-- ENSBTAP00000020895/1-1036 VGSSRQLPQC VLREKAALGD LPPPQ----- --QQQLTAFL QQLQALKPPR 651 700 ENSTTRP00000005833/1-1026 GGDQNLLPTM NRSLSAPDSG PLWDIHTSAS SQSGGEASLW DIPINSSTQG bmy_16120T0/1-622 ---------- ---------- ---------- ---------- ---------- ENSP00000275732/1-1035 GGDQNLLPTM SRSLSVPDSG RLWDVHTSAS SQSGGEASLW DIPINSSTQG BACU012070/1-903 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020895/1-1036 GGDQNLLPTM NRSLSVPDSG PLWDIHTSAS PQSGGEASLW DIPINSSTQG 701 750 ENSTTRP00000005833/1-1026 PILEQLQLQH KFQERREVEL RAKREEEERK RREEKRR--Q QQQEEQKRRQ bmy_16120T0/1-622 ---------- ---------- ---------- ---------- ---------- ENSP00000275732/1-1035 PILEQLQLQH KFQERREVEL RAKREEEERK RREEKRR--Q QQQEEQKRRQ BACU012070/1-903 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020895/1-1036 PILEQLQLQH KFQERREVEL RAKREEEERK RREEKRRQQQ QQQEEQKRRQ 751 800 ENSTTRP00000005833/1-1026 EEEELFRRKQ VRQQELLLKL LQQQQ-AVAA VPVPPAPSSP PPLWAGLAKQ bmy_16120T0/1-622 ---------- ---------- ---------- VSIPPFAQSR DGRW------ ENSP00000275732/1-1035 EEEELFRRKH VRQQELLLKL LQQQQ----A VPVPPAPSSP PPLWAGLAKQ BACU012070/1-903 ---------- ---------- ---------- ------PSSP PPLWAGLAKQ ENSBTAP00000020895/1-1036 EEEELFRRKQ ARQQELLLKL LQQQQQAVAA VPAPPTPSSP PPLWAGLAKQ 801 850 ENSTTRP00000005833/1-1026 GLSMKTLLEL QLEGERQMHK QPPPREPSRA QAPNHRVQLG GLGATPLNQW bmy_16120T0/1-622 ---------- EPGGWQRVLQ SKPRSEP--- ---------- ---------- ENSP00000275732/1-1035 GLSMKTLLEL QLEGERQLHK QPPPREPARA QAPNHRVQLG GLGTAPLNQW BACU012070/1-903 GLSMKTLLEL QLESERQMHK QPPPREPSRA PAPNHRV-LG GLGAAPLNQW ENSBTAP00000020895/1-1036 GLSMKTLLEL QLEGERHLHK QPPPREPSRA QAPNHRVQLG GLGSAPLNQW 851 900 ENSTTRP00000005833/1-1026 VSEAGPLWGG PDKS-GGSSG LGLWEDTLKS SGSLARSLGL KNSRSSPSLS bmy_16120T0/1-622 -----PELSG PH---SGKHG PGAAEEATGA GGS------- ---------- ENSP00000275732/1-1035 VSEAGPLWGG PDKSGGGSSG LGLWEDTPKS GGSLVRGLGL KNSRSSPSLS BACU012070/1-903 VSEAGPLWGG PDKS-GGSSG LGLWEDTLKS SGSLARSLGL KNSRSSPSLS ENSBTAP00000020895/1-1036 VSEAGPLWGG PDKSGGGSSS LGLWEDTLKS SGSLARSLGL KNSRSSPSLS 901 950 ENSTTRP00000005833/1-1026 DSYSHLSGRP VRKKTEEEEK LLKLLQGIPR PQDGFTQWCE QMLHTLSTTG bmy_16120T0/1-622 ---------- ---------- --RLVPAAAA P--------- ----AVSAAG ENSP00000275732/1-1035 DSYSHLSGRP IRKKTEEEEK LLKLLQGIPR PQDGFTQWCE QMLHTLSATG BACU012070/1-903 DSYSHLSGRP VRKKTEEEEK LLKLLQGIPR PQDGFTQWCE QMLHTLSATG ENSBTAP00000020895/1-1036 DSYSHLSGRP VRKKTEEEEK LLKLLQGIPR PQDGFTQWCE QMLHTLSTTG 951 1000 ENSTTRP00000005833/1-1026 SLDVPMAVAI LKEVESPYDV HDYIRSCLGD TLEAKEFAKQ FLERRAKQKA bmy_16120T0/1-622 ---------- ---------- ---------- ---------- ---------- ENSP00000275732/1-1035 SLDVPMAVAI LKEVESPYDV HDYIRSCLGD TLEAKEFAKQ FLERRAKQKA BACU012070/1-903 SLDVPMAVAI LKEVESPYDV HDYIRSCLGD TLEAKEFAKQ FLERRAKQKA ENSBTAP00000020895/1-1036 SLDVPMAVAI LKEVESPYDV HDYIRSCLGD TLEAKEFAKQ FLERRAKQKA 1001 1050 ENSTTRP00000005833/1-1026 SQQRQQQQEA WLSSGSLQTA FQTNHSTKLG SGEGSKAKRR ALMLHSDPSI bmy_16120T0/1-622 -------RQV W--------- ---------- ---GA----- ---------- ENSP00000275732/1-1035 SQQRQQQQEA WLSSASLQTA FQANHSTKLG PGEGSKAKRR ALMLHSDPSI BACU012070/1-903 SQQRQQQQEA WLSSGSLQTA FQTNHSTKLG SGEGSKAKRR ALMLHSDPSI ENSBTAP00000020895/1-1036 SQQRQQQQEA WLSSGSLQTA FQTNHSTKLG PGEGSKAKRR ALMLHSDPSI 1051 1100 ENSTTRP00000005833/1-1026 LGYSLHGPSG EIESVDDY bmy_16120T0/1-622 ---------- -------- ENSP00000275732/1-1035 LGYSLHGSSG EIESVDDY BACU012070/1-903 LGYSLHGPSG EIESVDDY ENSBTAP00000020895/1-1036 LGYSLHGPSG EIESVDDY