KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:57 2014 Check: 00 .. Name: ENSTTRP00000011981/1-1431 Len: 1491 Check: 7234 Weight: 1.00 Name: ENSP00000307513/1-1479 Len: 1491 Check: 3119 Weight: 1.00 Name: bmy_15044T0/1-1139 Len: 1491 Check: 8433 Weight: 1.00 Name: ENSBTAP00000020897/1-1443 Len: 1491 Check: 2419 Weight: 1.00 Name: BACU006143/1-1470 Len: 1491 Check: 6915 Weight: 1.00 // 1 50 ENSTTRP00000011981/1-1431 MRPGRPAPAP WPRHLLRCAL LLGSLHLGRP G-AAAAALSE PNVFLIFSHG ENSP00000307513/1-1479 MGPGRPAPAP WPRHLLRCVL LLGCLHLGRP GAPGDAALPE PNVFLIFSHG bmy_15044T0/1-1139 MGPGRPTPAP WPRHLLRCAL LLGGLHLGRP G-AAAAALSE PNVFLIFSHG ENSBTAP00000020897/1-1443 ---------- ---------- ---------- -----AFLPE PNVFVIFSHG BACU006143/1-1470 -------MRS WARPQPRVLD ---------- --PALRWLVK PNVFLIFSHG 51 100 ENSTTRP00000011981/1-1431 LQGCLETQGG QVRVSPACNA SLPAQRWKWV SRNRLFNLGT MQCLGTGWPG ENSP00000307513/1-1479 LQGCLEAQGG QVRVTPACNT SLPAQRWKWV SRNRLFNLGT MQCLGTGWPG bmy_15044T0/1-1139 LQGCLETQGG QVRVSPACNA SLPAQRWKWV SRNRLFNLGT MQCLGTGWPG ENSBTAP00000020897/1-1443 LQGCLEAQGG QVRVSPACNA SLPAQRWKWV SRNRLFNLGT MQCLGTGWPG BACU006143/1-1470 LQGCLETQGG QVRVSPACNA SLPAQRWKWV SRNRLFNLGT MQCLGTGWPG 101 150 ENSTTRP00000011981/1-1431 TNTTASLGMY ECDREALNLR WHCRTLGDQL SLLLGGRSSN TSKPGTPERG ENSP00000307513/1-1479 TNTTASLGMY ECDREALNLR WHCRTLGDQL SLLLGARTSN ISKPGTLERG bmy_15044T0/1-1139 TNTTASLGMY ECDREALNLR WHCRTLGDQL SLLLGGRSSN TSKAGTPERG ENSBTAP00000020897/1-1443 TNTTASLGMY ECDREALSLR WNCRTLGDQL SLLLGGRVGN TSKAGSPERG BACU006143/1-1470 TNTTASLGMY ECDREALNLR WHCRTLGDQL SLLLGGRSSN TSKAGSPERG 151 200 ENSTTRP00000011981/1-1431 DQTRNGQWRI YGSDEDLCAR PYYEVYTIQG NSHGKPCTIP FKYDNQWFHS ENSP00000307513/1-1479 DQTRSGQWRI YGSEEDLCAL PYHEVYTIQG NSHGKPCTIP FKYDNQWFHG bmy_15044T0/1-1139 DQTRSGQWRI YGSDEDLCAR PYYEVYTIQG NSHGKPCTIP FKYDNQWFHG ENSBTAP00000020897/1-1443 DQTRSGQWRI YGSDEDLCAR PYYEVYTIQG NSHGKPCTIP FKYDNQWFHG BACU006143/1-1470 DQTRSGQWRI YGSDEDLCAR PYYEVYTIQG NSHGKPCTIP FKYDNQWFHG 201 250 ENSTTRP00000011981/1-1431 CTSTGREDGH LWCATTQDYG KDERWGFCPI KSNDCETFWD KDQLTDSCYQ ENSP00000307513/1-1479 CTSTGREDGH LWCATTQDYG KDERWGFCPI KSNDCETFWD KDQLTDSCYQ bmy_15044T0/1-1139 CTSTGREDGH LWCATTQDYG KDERWGFCPI KSNDCETFWD KDQLTDSCYQ ENSBTAP00000020897/1-1443 CTSTGREDGH LWCATTQDYG KDERWGFCPI KGNDCETFWD KDQLTDSCYQ BACU006143/1-1470 CTSTGREDGH LWCATTQDYG KDERWGFCPI KSNDCETFWD KDQLTDSCYQ 251 300 ENSTTRP00000011981/1-1431 FNFQSTLSWR EAWASCEQQG ADLLSITEIH EQTYINGLLT GYSSTLWIGL ENSP00000307513/1-1479 FNFQSTLSWR EAWASCEQQG ADLLSITEIH EQTYINGLLT GYSSTLWIGL bmy_15044T0/1-1139 FNFQSTLSWR EAWASCEQQG ADLLSITEIH EQTYINGLLT GYSSTLWIGL ENSBTAP00000020897/1-1443 FNFQSTLSWR EAWASCEQQG ADLLSITEIH EQTYINGLLT GYSSTLWIGL BACU006143/1-1470 FNFQSTLSWR EAWASCEQQG ADLLSITEIH EQTYINGLLT GYSSTLWIGL 301 350 ENSTTRP00000011981/1-1431 NDLDTSGGWQ WSDNSPLKYL NWESDQPDNP SEENCGVIRT ESSGGWQNRD ENSP00000307513/1-1479 NDLDTSGGWQ WSDNSPLKYL NWESDQPDNP SEENCGVIRT ESSGGWQNRD bmy_15044T0/1-1139 NDLDTSGGWQ WSDNSPLKYL NWESDQPDNP SEENCGVIRT ESSGGWQNRD ENSBTAP00000020897/1-1443 NDLDTSGGWQ WSDNSPLKYL NWESDQPDNP SEENCGVIRT ESSGGWQNRD BACU006143/1-1470 NDLDTSGGWQ WSDNSPLKYL NWESDQPDNP SEENCGVIRT ESSGGWQNRD 351 400 ENSTTRP00000011981/1-1431 CSIALPYVCK KKPNATAAEP PPP------- ---DVWAXXX XXXXXXXXPF ENSP00000307513/1-1479 CSIALPYVCK KKPNATA-EP TPP------- ---DRWANVK VECEPSWQPF bmy_15044T0/1-1139 CSIALPYVCK KKPNATAAEP PPP------- ---DVWANVK VECEPSWQPF ENSBTAP00000020897/1-1443 CSIALPYVCK KKPNATASEP PPP------- ---DVWANVK VECEPSWQPF BACU006143/1-1470 CSIALPYVCK KKPNATAVEP PPPXXXXXXX XGAHVWANVK VECEPSWQPF 401 450 ENSTTRP00000011981/1-1431 QG-CFRLQVE KRSWQESKKM CLRGGGDLLS IHSVAELEFI TKQIKQEVEE ENSP00000307513/1-1479 QGHCYRLQAE KRSWQESKKA CLRGGGDLVS IHSMAELEFI TKQIKQEVEE bmy_15044T0/1-1139 QGHCYRLQAE KRSWQESKKM CLRGGGDLLS IHSMAELEFI TKQIKQEVEE ENSBTAP00000020897/1-1443 QGHCYRLQAE KRSWQESKKM CLRGGGDLLS IHSMAELEFI TKQIKQEVEE BACU006143/1-1470 QGHCYRLQAE KRSWQESKKM CLRGGGDLLS IHSVAELEFI TKQIKQEVEE 451 500 ENSTTRP00000011981/1-1431 LWIGLNDLKL QMNFEWSDGS LVSFTHWHPF EPNNFRDSLE DCVTIWGPXX ENSP00000307513/1-1479 LWIGLNDLKL QMNFEWSDGS LVSFTHWHPF EPNNFRDSLE DCVTIWGPEG bmy_15044T0/1-1139 LWIGLNDLKL QMNFEWSDGS L--------- ---------- --------EG ENSBTAP00000020897/1-1443 LWIGLNDLKL QMNFEWSDGS LVSFTHWHPF EPNNFRDSLE DCVTIWGPEG BACU006143/1-1470 LWIGLNDLKL QMNFEWSDGS LVSFTHWHPF EPNNFRDSLE DCVTIWGPEG 501 550 ENSTTRP00000011981/1-1431 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000307513/1-1479 RWNDSPCNQS LPSICKKAGQ LSQGAAEEDH GCRKGWTWHS PSCYWLGEDQ bmy_15044T0/1-1139 RWNDSPCNQS LPSICKKAGQ LSQGAAEEDH GCRK------ ---------- ENSBTAP00000020897/1-1443 RWNDSPCNQS LPSICKKAGQ LSQGAAEEDH GCRKGWTWHS PSCYWLGEDQ BACU006143/1-1470 RWNDSPCNQS LPSICKKAGQ LSQGAAEEDH GCRKGWTWHS PSCYWLGEDQ 551 600 ENSTTRP00000011981/1-1431 XXXXXXXXXX XXXXXXXXXX XXXFEQAFVS SLIYNWDGEY FWTALQDLNF ENSP00000307513/1-1479 VTYSEARRLC TDHGSQLVTI TNRFEQAFVS SLIYNWEGEY FWTALQDLNS bmy_15044T0/1-1139 ---------- ---------- ------AFVS SLIYNWDGEY FWTALQDLNF ENSBTAP00000020897/1-1443 VTYSEARRLC TDHGSQLVTI TNRFEQAFVS SLIYNWDGEY FWTALQDLNF BACU006143/1-1470 VTYSEARRLC TDHGSQLVTI TNRFEQAFVS SLIYNWDGEY FWTALQDLNF 601 650 ENSTTRP00000011981/1-1431 TGSFRWLSGD EVMYTHWNRD QPGYSRGGCV ALATGSAMGL WEVKNCTSFR ENSP00000307513/1-1479 TGSFFWLSGD EVMYTHWNRD QPGYSRGGCV ALATGSAMGL WEVKNCTSFR bmy_15044T0/1-1139 TGSFRWLSGD EVMYTHWNRD QPGYSRGGCV ALATGSAMGL WEVKNCTSFR ENSBTAP00000020897/1-1443 TGSFRWLSGD EVMYTHWNRD QPGYSRGGCV ALATGSAMGL WEVKNCTSFR BACU006143/1-1470 TGSFRWLSGD EVMYTHWNRD QPGYSRGGCV ALATGSAMGL WEVKNCTSFR 651 700 ENSTTRP00000011981/1-1431 ARYICRQSLG TPVTPELPGP DPTPSLTGAC PQGWGSDPKL RHCYKXXXXX ENSP00000307513/1-1479 ARYICRQSLG TPVTPELPGP DPTPSLTGSC PQGWASDTKL RYCYKVFSSE bmy_15044T0/1-1139 ARYICRQSLG TPVTPELPGP DPTPSLTGAC PQGWGSDPKL RHCYKVFSAE ENSBTAP00000020897/1-1443 ARYICRQSLG TPVTPELPGL DPTPSLTGAC PQGWGSDPKL RHCYKVFSSE BACU006143/1-1470 ARYICRQSLG TPVTPELPGP DPTPSLTGAC PQGWGSDPKL RHCYKVFSAE 701 750 ENSTTRP00000011981/1-1431 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXESEPEIH ENSP00000307513/1-1479 RLQDKKSWVQ AQGACQELGA QLLSLASYEE EHFVANMLNK IFGESEPEIH bmy_15044T0/1-1139 RLQDKKSWVQ AQRACQELGA QLLSLASYEE EHFVANMLNK IFGESEPEIH ENSBTAP00000020897/1-1443 RLQDKKTWVQ AQGACQELGA QLLSLASYEE EHFVANMLNK IFGESEPEIH BACU006143/1-1470 RLQDKKSWAQ AQRACQELGA QLLSLASYEE EHFVANMLNK IFGESEPEIH 751 800 ENSTTRP00000011981/1-1431 EQHWFWIGLN RRDPGAGHSW RWSDGLGFSY HNFDRSRHDD DDIRGCAVLD ENSP00000307513/1-1479 EQHWFWIGLN RRDPRGGQSW RWSDGVGFSY HNFDRSRHDD DDIRGCAVLD bmy_15044T0/1-1139 EQHWFWIGLN RRDPGAGQSW RWSDGLGFSY HNFDRSRHDD DDIRGCAVLD ENSBTAP00000020897/1-1443 EQHWFWIGLN RRDPGAGQSW RWSDGLGFSY HNFDRSRHDD DDIRSCTVLD BACU006143/1-1470 EQHWFWIGLN RRDPGAGQSW RWSDGLGFSY HNFDRSRHDD DDIRGCAVLD 801 850 ENSTTRP00000011981/1-1431 LASLQWVAMQ CETQLDWICK IPRGADVREP DGSPQXXXXX XXXXXXXXXX ENSP00000307513/1-1479 LASLQWVAMQ CDTQLDWICK IPRGTDVREP DDSPQGRREW LRFQEAEYKF bmy_15044T0/1-1139 LASLQWVAMQ CETQLDWICK IPRGTDVREP DGSPQ----- -VFSGPRAAL ENSBTAP00000020897/1-1443 LASLQWVAMQ CETQLDWICK IPRGTDVREP DVSPQGRREW LRFQEAEYKF BACU006143/1-1470 LASLQWVAMQ CETQLDWICK IPRGTDVREP DGSPQGRREW LRFQEAEYKF 851 900 ENSTTRP00000011981/1-1431 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000307513/1-1479 FEHHSTWAQA QRICTWFQAE LTSVHSQAEL DFLSHNLQKF SRAQEQHWWI bmy_15044T0/1-1139 VDRPAYFRER RAL------Q GSTVPSAGVI PARCHC---- ---------- ENSBTAP00000020897/1-1443 FEHHSTWAQA QRICTWFQAE LVSVHSQAEL DFLGHNLQKF SRGQEQHWWI BACU006143/1-1470 FEHHSTWAQA QRICTWFLAE LVSVHSQAEL DFLGHNLQKF SRGQEQHWWI 901 950 ENSTTRP00000011981/1-1431 XXXXXXXXXX XXWTDGSVIN FISWAPGKPR PIGKDKKCVY MMASREEWGD ENSP00000307513/1-1479 GLHTSESDGR FRWTDGSIIN FISWAPGKPR PVGKDKKCVY MTASREDWGD bmy_15044T0/1-1139 ---------- -RWTDGSVIN FISWAPGKPR PIGKDKKCVY MMASREEWGD ENSBTAP00000020897/1-1443 GLHTSESDGR FRWTDGSIIN FISWAPGKPR PIGKDKKCVY MMASREDWGD BACU006143/1-1470 GLHTSESDGR FRWTDGSVIN FISWAPGKPR PIGKDKKCVY MMASREEWGD 951 1000 ENSTTRP00000011981/1-1431 QRCMTALPYI CKRSNSTREQ QPPDPQPT-- GGCPPGWSQF LNKXXXXXXX ENSP00000307513/1-1479 QRCLTALPYI CKRSNVTKET QPPDLPTTAL GGCPSDWIQF LNKCFQVQGQ bmy_15044T0/1-1139 QRCMTALPYI CKRSNITREQ QPPDPPPT-- GGCPPGWSQF LNKCFRIQGQ ENSBTAP00000020897/1-1443 QRCTTALPYI CKRRNSTREQ QPPDLPPT-- GGCPSGWSQF LNKCFRIQGQ BACU006143/1-1470 QRCMTALPYI CKRSNITREQ QPPDPPPT-- GGCPPGWSQF LSKCFRIQGQ 1001 1050 ENSTTRP00000011981/1-1431 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000307513/1-1479 EPQSRVKWSE AQFSCEQQEA QLVTITNPLE QAFITASLPN VTFDLWIGLH bmy_15044T0/1-1139 DPQDRVKWSE AQFSCEQQEA QLVTIANPLE QAFITASLPN VTFDLWIGLH ENSBTAP00000020897/1-1443 DPQDRVKWSE AQFSCEQQEA QLVTIANPLE QAFITASLPN VTFDLWIGLH BACU006143/1-1470 DPQDRVKWSE AQFSCEQQEA QLVTIANPLE QAFITASLPN VTFDLWIGLH 1051 1100 ENSTTRP00000011981/1-1431 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000307513/1-1479 ASQRDFQWVE QEPLMYANWA PGEPSGPSPA PSGNKPTSCA VVLHSPSAHF bmy_15044T0/1-1139 ASQRDFQWVE QEPLRYTNWA PGEPSGPSPA PSGNIPTSCA VVLHSPSAHF ENSBTAP00000020897/1-1443 ASKRDFQWVE QEPLQYANWA PGEPSGPSPA PSGNIPTSCA VVLHSPSTHF BACU006143/1-1470 ASQRDFQWVE QEPLRYTNWA PGEPSGPSPA PSGNIPTSCA VVLHSPSAHF 1101 1150 ENSTTRP00000011981/1-1431 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000307513/1-1479 TGRWDDRSCT EETHGFICQK GTDPSLSPSP AALPPAPGTE LSYLNGTFRL bmy_15044T0/1-1139 TGRWDDRSCV EETHGFICQK RTDPSLSPCP AASLPAPGTE LSYLNGTFRL ENSBTAP00000020897/1-1443 TGRWDDRSCA EETHGFICQK ATDPSLSPSP AASPPAPGAE LSYLNGTFRL BACU006143/1-1470 TGRWDDQSCV EETHGFICQK GTDPSLSPCP AASLPAPGTE LSYLNGTFRL 1151 1200 ENSTTRP00000011981/1-1431 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000307513/1-1479 LQKPLRWHDA LLLCESRNAS LAYVPDPYTQ AFLTQAARGL RTPLWIGLAG bmy_15044T0/1-1139 LQKPLRWHDA LLLCESRNAS LAHVPDPYTQ AFLTQAARGL RTPLWIGLAS ENSBTAP00000020897/1-1443 LQKPLRWHDA LLLCESRNAS LAHVLDPYTQ AFLTQAARGL RTPLWIGLAS BACU006143/1-1470 LQKPLRWHDA LLLCESRNAS LAHVPDPYTQ AFLTQAARGL RTPLWIGLAS 1201 1250 ENSTTRP00000011981/1-1431 XXGSRRYSWV SEEPLSYVSW QDWEPQYPGG CAYVDMDGAW RTTSCDTKLQ ENSP00000307513/1-1479 EEGSRRYSWV SEEPLNYVGW QDGEPQQPGG CTYVDVDGAW RTTSCDTKLQ bmy_15044T0/1-1139 EEGSRRYSWV SEEPLSYVSW QDWEPQYPGG CAYVDVDGAW RTTSCDTKLQ ENSBTAP00000020897/1-1443 EEGSRRYSWV SEEPLSYVSW QDGEPQHPGG CAYVDTDGAW RTTSCDTKLQ BACU006143/1-1470 EEGSRRYSWV SEEPLSYVSW QDWEPQYPGG CAYVDMDGAW RTTSCDTKLQ 1251 1300 ENSTTRP00000011981/1-1431 GAVCGVNGGP PPPRRISYHG SCPQGLADSA WIPFREHCYS FHMELLLGHK ENSP00000307513/1-1479 GAVCGVSSGP PPPRRISYHG SCPQGLADSA WIPFREHCYS FHMELLLGHK bmy_15044T0/1-1139 GAVCGVNG-- ---------- ---------- ---------- ---------- ENSBTAP00000020897/1-1443 GAVCGVHGGP PPPRRISYHG SCPQGLADSA WIPFREHCYS FHMELLLGHK BACU006143/1-1470 GAVCGVNGGP PPPRRISYHG SCPQGLADSA WIPFREHCYS FHMELLLGHK 1301 1350 ENSTTRP00000011981/1-1431 EALQRCQREG GVVLSILDEM ENVFVWEHLQ SSEGQSRGAW LGMNFNPKGG ENSP00000307513/1-1479 EARQRCQRAG GAVLSILDEM ENVFVWEHLQ SYEGQSRGAW LGMNFNPKGG bmy_15044T0/1-1139 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020897/1-1443 EALQRCQRAG GAVLSILDEM ENVFVWEHLQ SSEGQSRGAW LGMNFNPKGG BACU006143/1-1470 EALQRCQREG GVVLSILDEM ENVFVWEHLQ SSEGQSRGAW LGMNFNPKGG 1351 1400 ENSTTRP00000011981/1-1431 TLVWQDNTAV NYSNWGPPGL GPSMLSHNSC YWIQSSSGLW RPGACTNITM ENSP00000307513/1-1479 TLVWQDNTAV NYSNWGPPGL GPSMLSHNSC YWIQSNSGLW RPGACTNITM bmy_15044T0/1-1139 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020897/1-1443 TLVWQDNTAV NYSNWGPPGL GPSMLSHNSC YWIQSSSGLW RPGACTNISM BACU006143/1-1470 TLVWQDNTAV NYSNWGPPGL GPSMLSHNSC YWIQSSSGLW RPGACANITM 1401 1450 ENSTTRP00000011981/1-1431 GVVCKLARAE ESSFSPS-AL PGSPAALLVV LMAVLLLLAL LTAALI---- ENSP00000307513/1-1479 GVVCKLPRAE QSSFSPS-AL PENPAALVVV LMAVLLLLAL LTAALILYRR bmy_15044T0/1-1139 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020897/1-1443 GVVCKLPRAE ASSFSPS-AL PENPAALVVV LMAVLLLLAL LTAALILYRR BACU006143/1-1470 GVVCKLPRAE ESSFSPSAAL PGNPAALVVV LMAVLLLLAL LTAALILYRR 1451 1500 ENSTTRP00000011981/1-1431 ---------- ---------- ---------- ---------- - ENSP00000307513/1-1479 RQSIERGAFE GARYSRSSSS PTEATEKNIL VSDMEMNEQQ E bmy_15044T0/1-1139 ---------- ---------- ---------- ---------- - ENSBTAP00000020897/1-1443 RQSVERGAFE GARYSRSSSG PSEATEKNIL VSDMEMNEQQ E BACU006143/1-1470 RQSVERGAFE GARYSRSSSG PGEATEKNIL VSDMEMNEQQ E