KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:12:57 2014 Check: 00 .. Name: ENSP00000160262/1-547 Len: 554 Check: 2422 Weight: 1.00 Name: ENSBTAP00000020903/1-544 Len: 554 Check: 4128 Weight: 1.00 Name: bmy_13748T0/1-535 Len: 554 Check: 9169 Weight: 1.00 Name: ENSTTRP00000009052/1-521 Len: 554 Check: 1544 Weight: 1.00 // 1 50 ENSP00000160262/1-547 MATMVPSVLW PRACWT---- -LLVCCLLTP GVQGQEFLLR VEPQNPVLSA ENSBTAP00000020903/1-544 ---MMPSGPP PRVYWTSLIF LLLACCLLPT GAQGQTYQVR VEPKDPVVPF bmy_13748T0/1-535 ---MMPSGPL PRACWTSFIS LLLVCCLLPP GTQGQEFQLR VEPQNPVVPA ENSTTRP00000009052/1-521 ---------- ---------- ---------- -TQGQELQLR VEPQNPVVPA 51 100 ENSP00000160262/1-547 GGSLFVNCST DCPSSEKIAL ETSLSKELVA SGMGWAAFNL SNVTGNSRIL ENSBTAP00000020903/1-544 GEPLVVNCTL DCPGPGLISL ETALSKEPHS RGLGWAAFRL TNVTGDMEIL bmy_13748T0/1-535 GESLLVNCSI DCPSAELISL ETSLLKESVG SGLSWAAFHL SNVTGDTQLL ENSTTRP00000009052/1-521 GESLLVNCST DCPSAGLIFL ETSLLKESVG RGLGWAAFQL SNVTGDTQLL 101 150 ENSP00000160262/1-547 CSVYCNGSQI TGSSNITVYR LPERVELAPL PPWQPVGQNF TLRCQVEDGS ENSBTAP00000020903/1-544 CSGICNKSQV VGFSNITVFG FPKRVELAPL PLWQPVGEEL NLSCLVSGGA bmy_13748T0/1-535 CSGFCNGSQM IGFSNITVYR FPERVELAPL PPWQPVGKHL ILCCMVSGGA ENSTTRP00000009052/1-521 CSGFCNGSQM IGFSNITVYR FPERVELAPL PHWQPMGENL TLRCMVSGGA 151 200 ENSP00000160262/1-547 PRTSLTVVLL RWEEELSRQP A-VEEPAEVT ATVLASRDDH GAPFSCRTEL ENSBTAP00000020903/1-544 PRAHLSVVLL RGEEELGQQP LGKEEPAKVT FMVQPRREDH GTNFSCRSEL bmy_13748T0/1-535 PRDHLTVVLL RGEKELSRQP AGKGEPAEVT VTVLATRDDH GANFSCRTEL ENSTTRP00000009052/1-521 PRDHLTVVLL RVEKEVGRQP AGDGEPAEVT VTVLASIDDH GANFSCRTEL 201 250 ENSP00000160262/1-547 DMQPQGLGLF VNTSAPRQLR TFVLPVTPPR LVAPRFLEVE TSWPVDCTLD ENSBTAP00000020903/1-544 DLRSQGLELF QNTSAPRKLQ TYAMPKTAPR LVFPRFWEME TSWPVNCSLD bmy_13748T0/1-535 DLRSQGLGLF QNSSAPRKLR TFAMPMTPPR LVVTRFSEVE TSWTVDCTLD ENSTTRP00000009052/1-521 DLRSQGLALF QNSSAPRKLR TFAMPMTPPR LVVPRFSEVE TSWPVDCTLD 251 300 ENSP00000160262/1-547 GLFPASEAQV YLALGDQMLN ATVMNHGDTL TATATATARA DQEGAREIVC ENSBTAP00000020903/1-544 GLFPASEAHI QLALGNQMLN ATVVSHADTL --TATATAKT EQEGTQEIVC bmy_13748T0/1-535 GLFPASEAQV QLALGDQMLN ATVVSHGDTL --TATATAKA EQEGTQEIVC ENSTTRP00000009052/1-521 GLFPASEAQV QLALGDQMLN ATVVSHDDTL --TATATAKA EQESTQEIVC 301 350 ENSP00000160262/1-547 NVTLGGERRE ARENLTVFSF LGPIVNLSEP TAHEGSTVTV SCMAGARVQV ENSBTAP00000020903/1-544 NVTLGVENRE TRESLVAYRF QGPNLNLSES NATEGTPVTV TCAAGPQVQV bmy_13748T0/1-535 NVTLGGESRE TRENVKAYSF QGPNLTLSEP NATEGTTVTV TCAAGPRVQV ENSTTRP00000009052/1-521 NVTLGGESRV TRENVKAYSF QGPNLTLKEP NATEGTTVTV TCAAGPRVRV 351 400 ENSP00000160262/1-547 TLDGVPAAAP GQPAQLQLNA TESDDGRSFF CSATLEVDGE FLHRNSSVQL ENSBTAP00000020903/1-544 MLDGVPAAVP GQPAQLQLKA TEMDDRRTFF CNATLKVHGV TLHRNRSIQL bmy_13748T0/1-535 TLDGVPAAAP GQPAHLQLNA TAKDDRRTFF CNATLEVHGV ILHH------ ENSTTRP00000009052/1-521 TLDGVPAAAP GQPAHLQLNA TAKDDRRTFF CNATLEVHGV ILHRNRSDQL 401 450 ENSP00000160262/1-547 RVLYGPKIDR ATCPQHLKWK DKTRHVLQCQ ARGNPYPELR CLKEGSSREV ENSBTAP00000020903/1-544 RVLYGPTIDR AKCPQRLMWK EKTMHILQCQ ARGNPNPQLQ CLREGSKFKV bmy_13748T0/1-535 ----GPKIDR AKCPQRLTWK DRTIHILQCQ ARGNPNPTLQ CLQEGSMFKV ENSTTRP00000009052/1-521 RVLYGPKIDR AKCPQRLTWK DRTMHILQCQ ARGNPNPKLQ CLQEGSKFKV 451 500 ENSP00000160262/1-547 PVGIPFFVNV THNGTYQCQA SSSRGKYTLV VVMDIEAGSS HFVPVFVAVL ENSBTAP00000020903/1-544 PVGIPFLVLL NYSGTYSCQA ASSRGTDKML VMMDVQGRNP VTINIVLGVL bmy_13748T0/1-535 PVGIPFLVRL NYRGTYYCQA ASSRGTDILT VMMDVQGRNP IAITIVLGVL ENSTTRP00000009052/1-521 PVGIPFLVRL NYSGTYNCQA TSSRGTDVLT VMMDVQGRNP IAITIVLGVL 501 550 ENSP00000160262/1-547 LTLGVVTIVL ALMYVFREHQ RSGSYHVREE STYLPLTSMQ PTEAMGEEPS ENSBTAP00000020903/1-544 AILGLVTLAA ASVYVFWVQR QHDIYHLTPR STRWRLTSTQ PV-TVAEELS bmy_13748T0/1-535 TILGLVILAA ASVYVFGVQK RRDIYHVRQS STRLPLAPKQ PDEAVAVELS ENSTTRP00000009052/1-521 TILGLVIFAA ALVCVFGVQK RRDIYHVRQS STWLPLAPQQ PDEAVAVELS 551 600 ENSP00000160262/1-547 RAE- ENSBTAP00000020903/1-544 ---- bmy_13748T0/1-535 ---- ENSTTRP00000009052/1-521 ASEC