KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:12:58 2014 Check: 00 .. Name: bmy_20294T0/1-384 Len: 394 Check: 1970 Weight: 1.00 Name: ENSP00000378313/1-382 Len: 394 Check: 5259 Weight: 1.00 Name: ENSTTRP00000009840/1-360 Len: 394 Check: 3739 Weight: 1.00 Name: ENSBTAP00000020909/1-390 Len: 394 Check: 9720 Weight: 1.00 // 1 50 bmy_20294T0/1-384 -----QPHPD EGHPPPLEAV PVPWKSVGPC KSHRESLGSL VETPAGKEAQ ENSP00000378313/1-382 -MWSGPPQPD QGLPPPLAAV PVPWKSTDPC QGHRESPGAL VETSAGEEAQ ENSTTRP00000009840/1-360 LRRGAQPHPD EGHPPPPEAV PVPWKSAGPC KSHRDS--GL VETPAGKEAQ ENSBTAP00000020909/1-390 -MWSGQPHPD EGHPPPLEAV PVPWKSVGPC KSHRESLGGL PETPAGEEAQ 51 100 bmy_20294T0/1-384 GEEDPAASRL DVLRLRSSSM EIREKGSEFL KEELHKAQKE LRLKDEECER ENSP00000378313/1-382 GQEGPAAAQL DVLRLRSSSM EIREKGSEFL KEELHRAQKE LKLKDEECER ENSTTRP00000009840/1-360 GEEDPAATRL DVLRLRSSSM EIREKGSEFL KEELHKAQKE LKLKDAECER ENSBTAP00000020909/1-390 GEEGPAATQL DVSRLRSSSM EIREKGSEFL KEELHKAQKE LKLKDEECER 101 150 bmy_20294T0/1-384 LSRVRTQLEQ ELEELTASLF EEAHKMVREA NMKQAASEKQ LKETRGKIDM ENSP00000378313/1-382 LSKVREQLEQ ELEELTASLF EEAHKMVREA NMKQAASEKQ LKEARGKIDM ENSTTRP00000009840/1-360 LCRVRGQLER ELEELTASLF EEAHRMVREA NMKQAASEKQ LKETRGKIDM ENSBTAP00000020909/1-390 LSKVREQLEQ ELEELTASLF EEAHKMVREA NMKQAASEKQ LKEARGKIDM 151 200 bmy_20294T0/1-384 LQAEVTALKT LVITSTPASP NRELHPQLLS PTKAGPRKGH LRHKSTSSAL ENSP00000378313/1-382 LQAEVTALKT LVITSTPASP NRELHPQLLS PTKAGPRKGH SRHKSTSSTL ENSTTRP00000009840/1-360 LQAEVTALKT LVITSTPASP NRELHPQLLS PTKAGPRKGH LRHNSTSSAL ENSBTAP00000020909/1-390 LQAEVTALKT LVITSTPASP NRELHPQLLS PTKAGPRKGH LRHKSTSSAL 201 250 bmy_20294T0/1-384 CPAVCPAVGH ALTPDKEGKE VDTTLFAEFQ AWRESPTLDK TSPFLERVYR ENSP00000378313/1-382 CPAVCPAAGH TLTPDREGKE VDTILFAEFQ AWRESPTLDK TCPFLERVYR ENSTTRP00000009840/1-360 CPAVCTAVGH APSLDKEGKE VDTTLFAEFQ AWRESPTLDK TSPFLERVYR ENSBTAP00000020909/1-390 CPAVCPVAGH ILTPDKEGKE VDTTLFAEFQ AWRESPTLDK TSPFLERVYR 251 300 bmy_20294T0/1-384 EDVGPCLDFT MQEVRQAEGG PPGGPAP--Q PAASPSPPPT PPCSTAALSP ENSP00000378313/1-382 EDVGPCLDFT MQELSVLVRA AVEDNTLTIE PVASQT---L PTVKVAEVDC ENSTTRP00000009840/1-360 EDVGPCLDFT MQELSALVRA AVEDNTLTIE PVASQT---L PAVKVAAVEC ENSBTAP00000020909/1-390 EDVGPCLDFT MQELSALVRA AVEDNTLTIE PVASQT---L PAVKVAAVDC 301 350 bmy_20294T0/1-384 GTGR--RGGQ HADHRARGFA NTARGEGGRC RVWPHQWV-P GPDRHITAVC ENSP00000378313/1-382 SSTN------ --TCALSGLT RTCRHRIRLG DSKSHYYISP SSRARITAVC ENSTTRP00000009840/1-360 GRTN------ --TCALSGLA CACRHRIRLG DSESHYYISP SSRARITAVC ENSBTAP00000020909/1-390 GHTNGFRAPI DTTCALSGLA CACRHRIRLG DSESHYYISP SSRARITAVC 351 400 bmy_20294T0/1-384 NFFTYIRYIQ QGLVRQDAEP MFWEITRLRK EMSLAKLGFF PQEA ENSP00000378313/1-382 NFFTYIRYIQ QGLVRQDAEP MFWEIMRLRK EMSLAKLGFF PQEA ENSTTRP00000009840/1-360 NFFTYIRYIQ QGLVRQDAEP MFW------- ---------- ---- ENSBTAP00000020909/1-390 NFFTYIRYIQ QGLVRQDAEP MFWEITRLRK EMSLAKLGFF PHEA