KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:59 2014 Check: 00 .. Name: ENSTTRP00000009782/1-771 Len: 812 Check: 1064 Weight: 1.00 Name: ENSP00000333896/1-772 Len: 812 Check: 1360 Weight: 1.00 Name: ENSBTAP00000020910/1-771 Len: 812 Check: 8714 Weight: 1.00 Name: bmy_10878T0/1-535 Len: 812 Check: 8117 Weight: 1.00 Name: BACU005330/1-771 Len: 812 Check: 7452 Weight: 1.00 // 1 50 ENSTTRP00000009782/1-771 ---------- ---------- ---------- ---------- MGDEDEDEGC ENSP00000333896/1-772 ---------- ---------- ---------- ---------- MGDEDDDESC ENSBTAP00000020910/1-771 ---------- ---------- ---------- ---------- MGDEDEDEGC bmy_10878T0/1-535 GAGARLSPGG GTRKLPPRPE PPCNRRRPEL SLAGPSDPPA MGDEDEDEGC BACU005330/1-771 ---------- ---------- ---------- ---------- MGDEDEDEGC 51 100 ENSTTRP00000009782/1-771 AVELQITEAN LTGHEEKVGV ENFQLLKVLG TGAYGKVFLV RKAGGHDAGK ENSP00000333896/1-772 AVELRITEAN LTGHEEKVSV ENFELLKVLG TGAYGKVFLV RKAGGHDAGK ENSBTAP00000020910/1-771 AVELQITEAN LTGHEEKVGV ENFQLLKVLG TGAYGKVFLV RKAGGHDAGK bmy_10878T0/1-535 AVELQITEAN LTGHEEKVGV ENFQLLK--- ---------- ---------- BACU005330/1-771 AVELQITEAN LTGHEEKVGV ENFQLLKVLG TGAYGKVFLV RKAGGHDAGK 101 150 ENSTTRP00000009782/1-771 LYAMKVLRKA ALVQRAKTQE HTRTERSVLE LVRQAPFLVT LHYAFQTDAK ENSP00000333896/1-772 LYAMKVLRKA ALVQRAKTQE HTRTERSVLE LVRQAPFLVT LHYAFQTDAK ENSBTAP00000020910/1-771 LYAMKVLRKA ALVQRAKTQE HTRTERSVLE LVRQAPFLVT LHYAFQTDAK bmy_10878T0/1-535 ---------- ---------- ---------- ---------- ---------- BACU005330/1-771 LYAMKVLRKA ALVQRAKTQE HTRTERSVLE LVRQAPFLVT LHYAFQTDAK 151 200 ENSTTRP00000009782/1-771 LHLILDYVNG GEMFTHLYQR QYFKEAEVRV YGGEIVLALE HLHKLGIIYR ENSP00000333896/1-772 LHLILDYVSG GEMFTHLYQR QYFKEAEVRV YGGEIVLALE HLHKLGIIYR ENSBTAP00000020910/1-771 LHLILDYVNG GEMFTHLYQR QYFREAEVRV YGGEIVLALE HLHKLGIIYR bmy_10878T0/1-535 ---------- ---------- ---------- ---------- ---------- BACU005330/1-771 LHLILDYVNG GEMFTHLYQR QYFKEAEVRV YGGEIVLALE HLHKLGIIYR 201 250 ENSTTRP00000009782/1-771 DLKLENVLLD SEGHVVLTDF GLSKEFLTEE KERTFSFCGT IEYMAPEIIR ENSP00000333896/1-772 DLKLENVLLD SEGHIVLTDF GLSKEFLTEE KERTFSFCGT IEYMAPEIIR ENSBTAP00000020910/1-771 DLKLENVLLD SEGHIVLTDF GLSKEFLTEE KERTFSFCGT IEYMAPEIIR bmy_10878T0/1-535 ---------- ---------- ---------- KERTFSFCGT IEYMAPEIIR BACU005330/1-771 DLKLENVLLD SEGHIVLTDF GLSKEFLTEE KERTFSFCGT IEYMAPEIIR 251 300 ENSTTRP00000009782/1-771 SKSGHGKAVD WWSLGILLFE LLTGASPFTL EGERNTQAEV SRRILKCSPP ENSP00000333896/1-772 SKTGHGKAVD WWSLGILLFE LLTGASPFTL EGERNTQAEV SRRILKCSPP ENSBTAP00000020910/1-771 SKSGHGKAVD WWSLGILLFE LLTGASPFTL EGERNTQAEV SRRILKCSPP bmy_10878T0/1-535 SKSGHGKAVD WWSLGILLFE LLTGASPFTL EGERNTQAEV SRRILKCSPP BACU005330/1-771 SKSGHGKAVD WWSLGILLFE LLTGASPFTL EGERNTQAEV SRRILKCSPP 301 350 ENSTTRP00000009782/1-771 FPPRIGPVAQ DLLQRLLCKD PKKRLGAGHQ GAQEVKNHPF FQGLDWAALA ENSP00000333896/1-772 FPPRIGPVAQ DLLQRLLCKD PKKRLGAGPQ GAQEVRNHPF FQGLDWVALA ENSBTAP00000020910/1-771 FPPRIGPVAQ DLLQRLLCKD PRKRLGAGPQ GAQEVKDHPF FQGLDWAALA bmy_10878T0/1-535 FPPRIGPVAQ DLLQRLLCKD PKKRLGAGHQ GAQEVRNHPF FQGLDWAALA BACU005330/1-771 FPPRIGPVAQ DLLQRLLCKD PKKRLGAGHQ GAQEVKNHPF FQGLEWAALA 351 400 ENSTTRP00000009782/1-771 ARKIPAPFRP QIRSELDVGN FAEEFTRLEP VYSPPGSPPP GDPRIFQGYS ENSP00000333896/1-772 ARKIPAPFRP QIRSELDVGN FAEEFTRLEP VYSPPGSPPP GDPRIFQGYS ENSBTAP00000020910/1-771 ARKIPAPFRP QIRSELDVGN FAEEFTRLEP VYSPPGSPPP GDPRIFQGYS bmy_10878T0/1-535 ARKIPAPFRP QIRSELDVGN FAEEFTRLEP VYSPPGSPPP GDPRIFQGYS BACU005330/1-771 ARKIPAPFRP QIRSELDVGN FAEEFTRLEP VYSPPGSPPP GDPRIFQGYS 401 450 ENSTTRP00000009782/1-771 FVAPSILFDH NNAVMTDVLE ASIAGDRPGR AALARSAMMQ DSPFFQQYEL ENSP00000333896/1-772 FVAPSILFDH NNAVMTDGLE APGAGDRPGR AAVARSAMMQ DSPFFQQYEL ENSBTAP00000020910/1-771 FVAPSILFDR NNAVMTDVLE ASGAGDRPGP AALARSVMMQ DSPFFQQYEL bmy_10878T0/1-535 FVAPSILFDH NNAVMTDVLE ASIAGDRPGR AALARSAMMQ DSPFFQQYEL BACU005330/1-771 FVAPSILFDH NNAVMTDVLE ASIAGDRPGR AALARSAMMQ DSPFFQQYEL 451 500 ENSTTRP00000009782/1-771 DLREPALGQG SFSVCRRCRQ LQNGQEFAVK ILSRRLEANT QREVAALRLC ENSP00000333896/1-772 DLREPALGQG SFSVCRRCRQ RQSGQEFAVK ILSRRLEANT QREVAALRLC ENSBTAP00000020910/1-771 DLREPALGQG SFSVCRRCRQ LQSGQEFAVK ILSRRLEENT QREVAALRLC bmy_10878T0/1-535 DLREPALGQG SFSVCRRCRQ LQNGQEFAVK ILSRRLEANT QREVAALRLC BACU005330/1-771 DLREPALGQG SFSVCRRCRQ LQNGQEFAVK ILSRRLEANT QREVAALRLC 501 550 ENSTTRP00000009782/1-771 QSHPNVVKLH EVHQDQLHTY LVLELLQGGE LLEHIRKKRH FSESEASQIL ENSP00000333896/1-772 QSHPNVVNLH EVHHDQLHTY LVLELLRGGE LLEHIRKKRH FSESEASQIL ENSBTAP00000020910/1-771 QSHPNVVKLH EVHHDQLHTY LVLELLQGGE LLEHIRKKRH FSESEASQIL bmy_10878T0/1-535 QSHPNVVKLH EVHQDQ---- ---------- ---------- ---------- BACU005330/1-771 QSHPNVVKLH EVHQDQLHTY LVLELLQGGE LLEHIRKKRH FSESEASQIL 551 600 ENSTTRP00000009782/1-771 RSLVSAVSFM HEEAGVVHRD LKPENILYAD DTPGAPVKII DFGFARLRPQ ENSP00000333896/1-772 RSLVSAVSFM HEEAGVVHRD LKPENILYAD DTPGAPVKII DFGFARLRPQ ENSBTAP00000020910/1-771 RSLVSAVSFM HEEAGVVHRD LKPENILYAD DTPGAPVKII DFGFARLRPQ bmy_10878T0/1-535 ---------- ---------- ---------- ---------- ---------- BACU005330/1-771 RSLVSAVSFM HEEAGVVHRD LKPENILYAD DTPGAPVKII DFGFARLRPQ 601 650 ENSTTRP00000009782/1-771 SPAGPMQTPC YTLQYAAPEL LAQQGYDXXX XXXXXXXXXX XXXXXXXXXX ENSP00000333896/1-772 SPGVPMQTPC FTLQYAAPEL LAQQGYDESC DLWSLGVILY MMLSGQVPFQ ENSBTAP00000020910/1-771 SPAGPMQTPC FTLQYAAPEL LAQQGYDESC DLWSLGVILY MMLSGQVPFQ bmy_10878T0/1-535 ---------- ---------- ---------- ---------Y MMLSGQVPFQ BACU005330/1-771 SPAGPMQTPC FTLQYAAPEL LAQQGYDESC DLWSLGVILY MMLSGQVPFQ 651 700 ENSTTRP00000009782/1-771 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXLLTVDPT ENSP00000333896/1-772 GASGQGGQSQ AAEIMCKIRE GRFSLDGEAW QGVSEEAKEL VRGLLTVDPA ENSBTAP00000020910/1-771 GASGQGGQSQ AAEIMCKIRE GRFSLDGEAW EGVSEEAKEL VRGLLTVDPA bmy_10878T0/1-535 GASGQGGQSQ AAEIMCKIRE GRFSLDGEAW QGVSEEAKEL VRGLLTVDPT BACU005330/1-771 GASGQGGQSQ AAEIMCKIRE GRFSLDGEAW QGVSEEAKEL VRGLLTVDPT 701 750 ENSTTRP00000009782/1-771 KRLKLEGLRG SSWLQDGSAR SSPPLRTPDV LESSGPAVRS GLNATFLAFN ENSP00000333896/1-772 KRLKLEGLRG SSWLQDGSAR SSPPLRTPDV LESSGPAVRS GLNATFMAFN ENSBTAP00000020910/1-771 KRLKLEGLRG SSWLQDGSAR SSPPLRTPDV LESSGSAVRS GLNATFMAFN bmy_10878T0/1-535 KRLKLEGLRG SSWLQDGSAR SSPPLRTPDV LESSGPAVRS GLNATFLAFN BACU005330/1-771 KRLKLEGLRG SSWLQDGSAR SSPPLRTPDV LESSGPAVRS GLNATFLAFN 751 800 ENSTTRP00000009782/1-771 RGKREGFFLK SVENAPLAKR RKQKLRSAAT SRRVSPVPAV PGRAP-AAKG ENSP00000333896/1-772 RGKREGFFLK SVENAPLAKR RKQKLRSATA SRRGSPAPAN PGRAPVASKG ENSBTAP00000020910/1-771 RGKREGFFLK SVENAPLAKR RKQKLRSAAT SRRVSPAPAA PGRAP-AAKG bmy_10878T0/1-535 RGKREGFFLK SVENAPLAKR RKQKLRSAAT SRRVSPVPAV PGRAP-AAKG BACU005330/1-771 RGKREGFFLK SVENAPLAKR RKQKLRSAAT SRRVSPVPAV PGRAP-AAKG 801 850 ENSTTRP00000009782/1-771 APRRANGPLP PS ENSP00000333896/1-772 APRRANGPLP PS ENSBTAP00000020910/1-771 TPRRANGPLP PS bmy_10878T0/1-535 APRRANGPLP PS BACU005330/1-771 APRRANGPLP PP