KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:59 2014 Check: 00 .. Name: ENSP00000334040/1-846 Len: 893 Check: 4514 Weight: 1.00 Name: ENSBTAP00000020914/1-660 Len: 893 Check: 1014 Weight: 1.00 Name: ENSTTRP00000012017/1-832 Len: 893 Check: 2778 Weight: 1.00 Name: bmy_04351T0/1-776 Len: 893 Check: 349 Weight: 1.00 Name: BACU012288/1-577 Len: 893 Check: 4830 Weight: 1.00 // 1 50 ENSP00000334040/1-846 MAEPPSPVHC VAAAAPTATV SEKEPFGKLQ LSSRDPPGSL SAKKVRTEEK ENSBTAP00000020914/1-660 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012017/1-832 MAEPPSLVHC APAA-----V SEKEPFSKLQ PPSRDPPGPL SAKKIRTEEK bmy_04351T0/1-776 ---------- ---------- ---------- ---------- ---------- BACU012288/1-577 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000334040/1-846 KAPRRVNGEG GSGGNSRQLQ PPAAPSPQSY GSPASWSFAP LSAAPSPSSS ENSBTAP00000020914/1-660 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012017/1-832 KTPRRLNGEG GSGGNSRQLQ SSAAPSPRSY GSPGSWSFAA LSAAPSPSSA bmy_04351T0/1-776 ---------- ---MSIRAIH PDFSSLPQ-- ---------- ---------- BACU012288/1-577 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000334040/1-846 RSSFSFSAGT AVPSSASASL SQPVPRKLLV PPTLLHAQPH HLLLPAAAAA ENSBTAP00000020914/1-660 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012017/1-832 RSNFSFSAGT AVPSSASASS SQPVPRKLLV PPTLLHAQPH HLLLPAA--A bmy_04351T0/1-776 ---------- ---------- ---------C GWDLFHALNK HLLRESLLYP BACU012288/1-577 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000334040/1-846 ASANAKSRRP KEKREKERRR HGLGGAREAG GASREENGEV KPLPR--DKI ENSBTAP00000020914/1-660 ---------- ---------- ---------- ---------M KALPR--DKI ENSTTRP00000012017/1-832 SSANAKPRRP KEKRE-ERRR HGLGGS-EAG GAALEENGEM KPLPR--DKI bmy_04351T0/1-776 QGMYTGGVRN DAKKKDTFLF YILTSTYKIP FASLNSNRIM GLLASVFHKI BACU012288/1-577 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000334040/1-846 KDKIKERDKE KEREKKKHKV MNEIKKENGE VKILLKSGKE KPKTNIEDLQ ENSBTAP00000020914/1-660 KDKIKERDKE KEREKKKHKV MNEIKKENGE VKILLKSGKE KPKTSVEDLQ ENSTTRP00000012017/1-832 KDKIKERDKE KEREKKKHKI MNEIKKENGE VKILLKSGKE KPKTSVEDLQ bmy_04351T0/1-776 KDKIKERDKE KEREKKKHKV MNEIKKENGE VKILLKSGKE KPKTSVEDLQ BACU012288/1-577 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000334040/1-846 IKKVKKKKKK KHKENEKRKR PKMYSKSIQT ICSGLLTDVE DQAAKGILND ENSBTAP00000020914/1-660 IKKVKKKKKK KHKENEKRKR PKMYSKSIQT ICSGLLSDVE DQEARGILND ENSTTRP00000012017/1-832 IKKAKKKKKK KHKENEKRKR PKMYSKSIQT ICSGLLSDVE DQEAKGILSD bmy_04351T0/1-776 IKKAKKKKKK KHKENEKRKR PKMYSKSIQT ICSGLLSDVE DQEAKGILND BACU012288/1-577 ---------- ---------- --MYSKSIQT ICSGLLSDVE DQEAKGILND 301 350 ENSP00000334040/1-846 NIKDYVGKNL DTKNYDSKIP ENSEFPFVSL KEPRVQNNLK RLDTLEFKQL ENSBTAP00000020914/1-660 TIKDYSGKSL DTKNYDSKIP ENSEFPFVSL KEPRVQNNLR RLDTLRFKQL ENSTTRP00000012017/1-832 NIKEYSGKNL DTKNYDSKIP ENSEFPFVSL KEPRVQNNLK RLDTLEFKQL bmy_04351T0/1-776 NIKDYSGKNL DTKNYDSKIP ENSEFPFVSL KEPRVQNNLK RLDTLEFKQL BACU012288/1-577 NIKDYSGKNL DTKNYDSKIP ENSEFPFVSL KEPRVQNNLK RLDTLEFKQL 351 400 ENSP00000334040/1-846 IHIEHQPNGG ASVIHAYSNE LSHLSPMEME RFAEEFVGLV FSENENSAAF ENSBTAP00000020914/1-660 IHIEHQPNGG ASVIHAYSNE LSHLSPVEME RFAEEFVDLV FSENENSAAF ENSTTRP00000012017/1-832 IHIEHQPNGG ASVIHAYSNE LSHLSPVEME RFAEEFVGLV FSENENSAAF bmy_04351T0/1-776 IHIEHQPNGG ASVIHAYSNE LSHLSPVEME RFAEEFVGLV FSENENSAAF BACU012288/1-577 IHIEHQPNGG ASVIHAYSNE LSHLSPVEME RFAEEFVGLV FSENENSAAF 401 450 ENSP00000334040/1-846 YVMGIVHGAA TYLPDFLDYF SFNFPNSPVK MEILGKKDIE TTTMSNFHAQ ENSBTAP00000020914/1-660 YVMGIVHGAA TYLPDFLDYF SFNFPNSPVK MEILGKKDIE TTTMSNFHAQ ENSTTRP00000012017/1-832 YVMGIVHGAA TYLPDFLDYF SFNFPNSPVK MEILGKKDIE TTTMSNFHAQ bmy_04351T0/1-776 YVMGIVHGAA TYLPDFLDYF SFNFPNSPVK MEILGKKDIE TTTMSNFHAQ BACU012288/1-577 YVMGIVHGAA TYLPDFLDYF SFNFPNSPVK MEILGKKDIE TTTMSNFHAQ 451 500 ENSP00000334040/1-846 ---------- ---------- ---------- ---------- --VKRTYSHG ENSBTAP00000020914/1-660 ---------- ---------- ---------- ---------- --VKRTYSHG ENSTTRP00000012017/1-832 ---------- ---------- ---------- ---------- --------HG bmy_04351T0/1-776 KISEIIKILL SFLPWIYFGS EMNFAIQMFY YDRTFIVMFL MWVKRTYSHG BACU012288/1-577 ---------- ---------- ---------- ---------- --VKRTYSHG 501 550 ENSP00000334040/1-846 TYRAGPMRQI SLVGAVDEEV GDYFPEFLDM LEESPFLKCT LPWGTLSSLK ENSBTAP00000020914/1-660 TYRAGPMRQI SLVGAVDEEV GDYFPEFLDM LEDSPFLKCT LPWGTLSSLK ENSTTRP00000012017/1-832 TYRAGPMRQI SLVGAVDEEV GDYFPEFLDM LEDSPFLKCT LPWGTLSSLK bmy_04351T0/1-776 TYRAGPMRQI SLVGAVDEEV GDYFPEFLDM LEDSPFLKCT LPWGTLSSLK BACU012288/1-577 TYRAGPMRQI SLVGAVDEEV GDYFPEFLDM LEDSPFLKCT LPWGTLSSLK 551 600 ENSP00000334040/1-846 LQSRKDSDDG PIMWVRPGEQ MIPVADMPKS PFKRKRTTNE IKNLQYLPRT ENSBTAP00000020914/1-660 LESRKDSDDG PIMWVRPGEQ MIPVADMPKS PFKRKRTTNE IKNLQYLPRT ENSTTRP00000012017/1-832 LESRKDSDDG PIMWVRPGEQ MIPVADMPKS PFKRKRTTNE IKNLQYLPRT bmy_04351T0/1-776 LESRKDSDDG PIMWVRPGEQ MIPVADMPKS PFKRKRTTNE IKNLQYLPRT BACU012288/1-577 LESRKDSDDG PIMWVRPGEQ MIPVADMPKS PFKRKRTTNE IKNLQYLPRT 601 650 ENSP00000334040/1-846 SEPREMLFED RTRAHADHIG QGFERQTTAA VGVLKAVHCG EW--PDQPRI ENSBTAP00000020914/1-660 SEPREMLFED RTRAHADHIG QGFERQTTAA VGVLKAVHCG EWYMPDQPRI ENSTTRP00000012017/1-832 SEPREMLFED RTRAHADHIG QGFERQTTAA VGVLKAVHCG EW--PDQPRI bmy_04351T0/1-776 SEPREMLFED RTRAHADHIG QGFERQTTAA VGVLKAVHCG E---PDQPRI BACU012288/1-577 SEPREMLFED RTRAHADHIG QGFERQTTAA VGVLKAVHCG EW--PDQPRI 651 700 ENSP00000334040/1-846 TKDVICFHAE DFLEVVQRMQ LDLHEPPLSQ CVQWVDDAKL NQLRREGIRY ENSBTAP00000020914/1-660 TKDVICFHAE DFLEVVQRMQ LDLHEPPLSQ CVQWVDDAKL NQLRREGIRY ENSTTRP00000012017/1-832 TKDVICFHAE DFLEVVQRMQ LDLHEPPLSQ CVQWVDDAKL NQLRREGIRY bmy_04351T0/1-776 TKDVICFHAE DFLEVVQRMQ LDLHEPPLSQ CVQWVDDAKL NQLRREGIRY BACU012288/1-577 TKDVICFHAE DFLEVVQRMQ LDLHEPPLSQ CVQWVDDAKL NQLRREGIRY 701 750 ENSP00000334040/1-846 ARIQLYDNDI YFIPRNVVHQ FKTVSAVCSL AWHIRLKLYH SEEDTSQNTA ENSBTAP00000020914/1-660 ARIQLYDNDI YFIPRNVVHQ FKTVSAVCSL AWHVRLKLYH SEEDPAQNTV ENSTTRP00000012017/1-832 ARIQLYDNDI YFIPRNVVHQ FKTVSAVCSL AWHVRLKLYH SEEDTAQNTV bmy_04351T0/1-776 ARIQLYDNDI YFIPRNVVHQ FKTVSAVCSL AWHVRLKLYH SEEDTAQNTV BACU012288/1-577 ARIQLYDNDI YFIPRNVVHQ FKTVSAVCSL AWHVRLKLYH SEEDTAQNTV 751 800 ENSP00000334040/1-846 THETGTSSDS TSSVLGPHTD NMICAVSKAS LDSVFSDKLH SKYELQQIKH ENSBTAP00000020914/1-660 THETGTSPDS TSSVLGPHTD STICAVSKTS LDSIFSDKLH SKYELQQVKH ENSTTRP00000012017/1-832 THETCTSPDS TSSVLGPHTD NMICAVSKTS LDSVFSDKLH SKYELQQIKH bmy_04351T0/1-776 THETRTSPDS TSSVLGPHTD SMICAVSKTS LDSVFSDKLH SKYELQQIKH BACU012288/1-577 THETRTSPDS TSSVLGPHTD SMICAVSKTS LDSVFSDKLH SKYELQQIKH 801 850 ENSP00000334040/1-846 EPIASVRIKE EPVNVNIPEK TTALNNMDGK NVKAKLDHVQ FAEFKIDMDS ENSBTAP00000020914/1-660 EPVASVRIKE EPVNVYIPEK TGAPNNMDSK NVKAKLDHVQ FTEFKVEVDS ENSTTRP00000012017/1-832 EPIATVRIKE EPVNVYIPEK TGAPNNMDGK NVKAKLDHVQ FTEFKIDVDS bmy_04351T0/1-776 EPIASVRIKE EPVNVYIPEK TGAPNNMDGK NVKAKLDHVQ FTEFKIDVDS BACU012288/1-577 EPIASVRIKE EPVNVYIPEK TGAPNNMDGK NVKAKLDHVQ FTEFKIDVDS 851 900 ENSP00000334040/1-846 KFENSNKDLK EELCPGNL-S LVDTRQHSSA HSNQDKKDDD ILC ENSBTAP00000020914/1-660 KFENSNKDLK EELCPGSLIS LVDTRQHSST RSNQERKDDD ILC ENSTTRP00000012017/1-832 KFENSNKDLK EEMCPGSLIS LVDTRQHSST HSNQERKDDN ILC bmy_04351T0/1-776 KFENSNKDLK EEMCPGSLIS LVDTRQHSST HSNQERKDDN ILC BACU012288/1-577 KFENSNKDLK EEMCPGSLIS LVDTRQHSST HSNQERKDDN ILC