KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:00 2014 Check: 00 .. Name: ENSP00000258381/1-713 Len: 838 Check: 3599 Weight: 1.00 Name: ENSBTAP00000020915/1-388 Len: 838 Check: 4549 Weight: 1.00 Name: ENSTTRP00000008804/1-712 Len: 838 Check: 1489 Weight: 1.00 Name: bmy_04891T0/1-658 Len: 838 Check: 9353 Weight: 1.00 Name: BACU010961/1-560 Len: 838 Check: 9936 Weight: 1.00 // 1 50 ENSP00000258381/1-713 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020915/1-388 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008804/1-712 ---------- ---------- ---------- ---------- ---------- bmy_04891T0/1-658 MAVTRKEEEA WPSPRVAKHR LPVSPPGISL PFSQSPRSHP RAAPGPGRGQ BACU010961/1-560 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000258381/1-713 ---------M FTMTRAMEEA LFQHFMHQKL GIAYAIHKPF PFFEGLLDNS ENSBTAP00000020915/1-388 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008804/1-712 ---------R FTMTRTLKEV LLQHFIHQKL EIAYAINKPF PFFEGLRDNF bmy_04891T0/1-658 EQIAISASRR FTMTRALKEA LLQHFIHQKL EIAYAINKPF PFFEGLRDNF BACU010961/1-560 ---------- --MTRALKEA LLQHFIHQKL EIAYAINKPF PFFEGLRDNF 101 150 ENSP00000258381/1-713 IITKRMYMES LEACRNLIPV SRVVHNILTQ LERTFNLSLL VTLFSQINLR ENSBTAP00000020915/1-388 ---------- MEACENLVPL SRVVYNILTQ LEKTFSLSFL KILFSQINLN ENSTTRP00000008804/1-712 FITERLYQES LEACRNMVPL SRVVYNILTQ LENTFSLSFL ETLFSQINLS bmy_04891T0/1-658 FITESLYQES LEACRNLVPL SRVVYNILTQ LENTFSLSLL ELLFSRINLS BACU010961/1-560 FITERLYQES LEACRNLVPL SRVVYNILTQ LENTFSLSFL ELLFSRINLS 151 200 ENSP00000258381/1-713 EYPNLVTIYR SFKRVGASYE WQSRDTPILL EAPTGLAEGS SLHTPLALP- ENSBTAP00000020915/1-388 EYPNLITTLN SFTRVVTSHG GWSRITTTLL EAPANPAGRS SPRTLLLPRL ENSTTRP00000008804/1-712 EYPNLMTTLK SFKRVVTSNE GWGGITTIPL EAAANPAGRS SVRALLLPP- bmy_04891T0/1-658 EYPNLMTTLK SFKRVVISNG GWSRITAIPL EAAATPAGRS SLWALLPLP- BACU010961/1-560 EYPNLMTTLK SFKRVVISNG GWSRITTIPL EAAANPAGRS SPWALLPLP- 201 250 ENSP00000258381/1-713 PPQPPQPSCS PCAPRVSEPG TSSQQSDEIL SESPSPSDPV LPLPALIQEG ENSBTAP00000020915/1-388 PCRQPLRSLP PCGPSVSER- APAQRSSEVL RELPSRTGLT MTLRETIQKG ENSTTRP00000008804/1-712 TCQHPPSSRP PCSPSVSEPG APAQPSAEIL HEHPSPADLT VTLPGITQEG bmy_04891T0/1-658 TCPHPPLSLP PCSPSVSEPG APAQPSAEIL QEQPSPAGLT VALPGTIQEG BACU010961/1-560 SCQHPPLSLP PCSPSVSEPG APAQPSAEIL HEQPSPAGLT VALPRIIQEG 251 300 ENSP00000258381/1-713 RSTSVTNDKL TSKMNAEEDS EEMPSLLTST VQVASDNLIP QIRDKEDPQE ENSBTAP00000020915/1-388 RLSP------ ---------- ---------- --VSSDSLTP QIKDKEDTQE ENSTTRP00000008804/1-712 RLTPVTNDNL ISQISDENSQ ETPSYPIPV- --VSSDNLIP QTKDKEDTQE bmy_04891T0/1-658 RLTP------ ---------- ---------- --VSSDNLIP QIKDKEDTQE BACU010961/1-560 RLTP------ ---------- ---------- --VSSDNLIP QIKDKEDTQE 301 350 ENSP00000258381/1-713 MPHSPLGSMP EIRDNSP--- EPNDPEEPQE VSSTPSDKKG KKRKRCIWST ENSBTAP00000020915/1-388 MPCTSSDPVP VKRDDVP--- EPSDPKELQE ASRTLPSKKG KKRKRCIWAT ENSTTRP00000008804/1-712 MSCAPSGPVP VIRDDAPGXX XXXXXXXXXX XXXXPPSKKG KKRKRSIWLT bmy_04891T0/1-658 MSCAASGPVP VIRDDAP--- EPSDPKELQE ASRAPPSKKG KKRKRNIWLT BACU010961/1-560 MSCAPSGPVP VIRDDAP--- EPSDPKELQE ASRAPPSKKG KKRKRNIWLT 351 400 ENSP00000258381/1-713 PKRRHKKKS- ---------- ---------L PGGTASSRHG IQKKLKRVDQ ENSBTAP00000020915/1-388 SKKRQQKNSH QGSKMRKQEG AGGQRQLIPV DQGAALPGHG IQKTLQGLDQ ENSTTRP00000008804/1-712 SRKRHQKKS- ---------- ---------L PRGAALPGHG IQTMLHVAEQ bmy_04891T0/1-658 SKKRRQKKS- ---------- ---------L PRGAALPGHG TQKTLQVAEQ BACU010961/1-560 SKKRRQKKS- ---------- ---------L PRGAALPGHG TEKTLQVAEQ 401 450 ENSP00000258381/1-713 VPQKKDDSTC NSTVETRAQK ARTECARKSR SEEIIDGTSE MNEGKRSQKT ENSBTAP00000020915/1-388 VTHTEDDSIR NTKVMTRTQK RRTECAQMPK SEEISDNTSE MDEGKRSQEP ENSTTRP00000008804/1-712 VTHREDDSTR NTKVMTRARK RRTECGQTPA PEEVSDDTSE MDERKRPQEL bmy_04891T0/1-658 VTPREDDSTR NTKVTTRAKK RRTECAQTPA PEEVXDGTSE MDEGKRPQEP BACU010961/1-560 VTHREDDSTR NTKVTTRAKK RRTECAQMPA PEEVSDGTSE MNEGKRPQEP 451 500 ENSP00000258381/1-713 PSTPRRVTQG AA-------- ---------- ---------- ---------- ENSBTAP00000020915/1-388 PSTPPRITHG KDSMDDDSKL SLEKSPGKKQ KKRKIHNWSS SKKRQKKCLS ENSTTRP00000008804/1-712 PSTPPRLTHX XX-------- ---------- ---------- ---------- bmy_04891T0/1-658 PSTPPRLTHG KG-------- ---------- RKRKIHSWSS SKNRQKKSLP BACU010961/1-560 PSTPPRLTHG KDPMDKGGKL PLVKSPGEKR RKRKIHSWSS SKKRQKKSLP 501 550 ENSP00000258381/1-713 ----SPGHGI QEKLQVVDKV TQRKDDSTWN SEVMMRVQKA RTKCARKSRL ENSBTAP00000020915/1-388 KGAASSGLRI QEKLQGVNQV TQKKDDSTRK ---------- ---------- ENSTTRP00000008804/1-712 ----XXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04891T0/1-658 RGSALPGRRT QEMLQEVDQV TERKDDSTRS SKVMTRAQKA RAERAQKPAP BACU010961/1-560 RGSALPGRRT QEMLQVVDQV TERKDGSTRS SKVMKQAQKA RAERAQKPAP 551 600 ENSP00000258381/1-713 KEKKKEKDIC SSSKRRFQKN IHRRGKPKSD TVDFHCSKLP VTCGEAKGIL ENSBTAP00000020915/1-388 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008804/1-712 XXKGRIKDVC SSATTSCHRN SPIKEKPEDE TLDFHSPKLP VTCGKAKGIL bmy_04891T0/1-658 EKKKRIKDVC SSAATSCQRN IPIKEKPKDE TLDFHSPKLP VTCGEAKGIL BACU010961/1-560 EKKKRIKDVC SSATTSCQRN IRIKGKPKDE ALDFHSPKLP VTCGDAKGIL 601 650 ENSP00000258381/1-713 YKKKMKHGSS VKCIRNEDGT WLTPNEFEVE GKGRNAKNWK RNIRCEGMTL ENSBTAP00000020915/1-388 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008804/1-712 YKEKMKQGSS EKCIQNKKGL WFTPREFEIE GKRKQSKNWK RSVLCRGKTL bmy_04891T0/1-658 YKEKMKQGSS EKCIRNEKGL WFTPREFEIE GKRKQSKNWK RSVLCRGKTL BACU010961/1-560 YKEKMKQGSS EKCIQNEKGL WFTPREFEIE GKRKQSKNWK RSVLCRGKTL 651 700 ENSP00000258381/1-713 GELLKRKNSD ECEVCCQGGQ LLCCGTCPRV FHEDCHIPPV EAKRMLWSCT ENSBTAP00000020915/1-388 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008804/1-712 EQLLEQENSR ECEVCCRGGP LLCCDTCPRA FHEDCHIPPA EAERSTWSCT bmy_04891T0/1-658 EQLLEK---- --------GL LLC------- -------PPR RSLKRESSC- BACU010961/1-560 EHLLEK---- --------GL LLC------- -------PPR RSLKREVNSR 701 750 ENSP00000258381/1-713 FCRMKRSSGS QQCHHVSKTL ERQMQPQDQL KCEFLLLKAY CHPQSSFFTG ENSBTAP00000020915/1-388 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008804/1-712 FCRMKESSGS QQCLGESGVL ARQMQPEEQL KCEFLLLKAY CHPQSSFFTE bmy_04891T0/1-658 -CRLSVSQGL PGSSRLSQPQ V--------- --------TF PFQHCIFMTT BACU010961/1-560 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000258381/1-713 IPFNIRDYGE PFQEAMWLDL VKERLITEMY TVAWFVRDMR LMFRNHKTFY ENSBTAP00000020915/1-388 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008804/1-712 APCNIRDYGE PFREAMWLDL VKERLAEKVY TVAWFLRDIR LIFRNHKTFY bmy_04891T0/1-658 ALAHWYMYMP PLFSKLILR- ---------- ---------- ---------- BACU010961/1-560 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000258381/1-713 KASDFGQVGL DLEAEFEKDL KDVLGFHEAN DGGFWTLP ENSBTAP00000020915/1-388 ---------- ---------- ---------- -------- ENSTTRP00000008804/1-712 KVTD-AQVGL DLEAEFEKDL KEVLVFHEAS ENSFQVPP bmy_04891T0/1-658 ---------- ---------- ---------- ----WGSK BACU010961/1-560 ---------- ---------- ---------- --------