KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:03 2014 Check: 00 .. Name: BACU003270/1-614 Len: 690 Check: 5006 Weight: 1.00 Name: bmy_08019T0/1-689 Len: 690 Check: 7713 Weight: 1.00 Name: ENSTTRP00000012908/1-573 Len: 690 Check: 2029 Weight: 1.00 Name: ENSP00000362918/1-579 Len: 690 Check: 6642 Weight: 1.00 Name: ENSBTAP00000020940/1-580 Len: 690 Check: 6286 Weight: 1.00 // 1 50 BACU003270/1-614 AARRRFLPPQ R--------- ---------- ---------- --PKG----- bmy_08019T0/1-689 MSASSLLE-Q ACAFIPLSVP ALICLSFSVF SSDDVLLGDV SFPRRDQKVK ENSTTRP00000012908/1-573 MSASSLLE-Q R--------- ---------- ---------- --PKG----- ENSP00000362918/1-579 MSASSLLE-Q R--------- ---------- ---------- --PKG----- ENSBTAP00000020940/1-580 MSASSLLE-Q R--------- ---------- ---------- --PKG----- 51 100 BACU003270/1-614 ---------Q GN-------- ---------- ---------- ---KVQNGSV bmy_08019T0/1-689 ETKINLLWVE GDIFTNVAQH SLSSLFFRNP NLLALCSTVF LWLGVQNGSV ENSTTRP00000012908/1-573 ---------Q GN-------- ---------- ---------- ---KVQNGSV ENSP00000362918/1-579 ---------Q GN-------- ---------- ---------- ---KVQNGSV ENSBTAP00000020940/1-580 ---------Q GN-------- ---------- ---------- ---KVQNGSV 101 150 BACU003270/1-614 HQKDGLNDDD FEPYLSPQAR PNNAYTAMSD SYLPSYYSPS IGFSYSLGEA bmy_08019T0/1-689 HQKDGLNDDD FEPYLSPQAR PNNAYTAMSD SYLPSYYSPS IGFSYSLGEA ENSTTRP00000012908/1-573 HQKDGLNDDD FEPYLSPQAR PNNAYTAMSD SYLPSYYSPS IGFSYSLGEA ENSP00000362918/1-579 HQKDGLNDDD FEPYLSPQAR PNNAYTAMSD SYLPSYYSPS IGFSYSLGEA ENSBTAP00000020940/1-580 HQKDGLNDDD FEPYLSPQAR PNNAYTAMSD SYLPSYYSPS IGFSYSLGEA 151 200 BACU003270/1-614 AWSTGGDTAM PYLTSYGQLS NGEPHFLPDA MFGQPGALGS TPFLGQHGFN bmy_08019T0/1-689 AWSTGGDTAM PYLTSYGQLS NGEPHFLPDA MFGQPGALGS TPFLGQHGFN ENSTTRP00000012908/1-573 AWSTGGDTAM PYLTSYGQLS NGEPHFLPDA MFGQPGALGS TPFLGQHGFN ENSP00000362918/1-579 AWSTGGDTAM PYLTSYGQLS NGEPHFLPDA MFGQPGALGS TPFLGQHGFN ENSBTAP00000020940/1-580 AWSTGGDTAM PYLTSYGQLS NGEPHFLPDA MFGQPGALGS TPFLGQHGFN 201 250 BACU003270/1-614 FFPSGIDFSA WGNNSSQGQS TQSSGYSSNY AYAPSSLGGA MIDGQSAFAS bmy_08019T0/1-689 FFPSGIDFSA WGNNSSQGQS TQSSGYSSNY AYAPSSLGGA MIDGQSAFAS ENSTTRP00000012908/1-573 FFPSGIDFSA WGNNSSQGQS TQSSGYSSNY AYAPSSLGGA MIDGQSAFAS ENSP00000362918/1-579 FFPSGIDFSA WGNNSSQGQS TQSSGYSSNY AYAPSSLGGA MIDGQSAFAN ENSBTAP00000020940/1-580 FFPSGIDFSA WGNNSSQGQS TQSSGYSSNY AYAPSSLGGA MIDGQSAFAS 251 300 BACU003270/1-614 ETLNKAPGMN TIDQGMAALK LGSTEVASNV PKVVGSAVGS GSITSNIVAS bmy_08019T0/1-689 ETLNKAPGMN TIDQGMAALK LGSTEVASNV PKVVGSAVGS GSISSNIVAS ENSTTRP00000012908/1-573 ETLNKAPGMN TIDQGMAALK LGSTEVASNV PKVVGSAVGS GSITSNIVAS ENSP00000362918/1-579 ETLNKAPGMN TIDQGMAALK LGSTEVASNV PKVVGSAVGS GSITSNIVAS ENSBTAP00000020940/1-580 ETLNKAPGMN TIDQGMAALK LGSTEVASNV PKVVGSAVGS GSITSNIVAS 301 350 BACU003270/1-614 NSLPPATIAP PKPASWADIA SKPAKQQPKL KTKNGIAGSS LPPPPIKHNM bmy_08019T0/1-689 NSLPPATIAP PKPASWADIA SKPAKQQPKL KTKNGIAGSS LPPPPIKHNM ENSTTRP00000012908/1-573 NSLPPATIAP PKPASWADIA SKPAKQQPKL KTKNGIAGSS LPPPPIKHNM ENSP00000362918/1-579 NSLPPATIAP PKPASWADIA SKPAKQQPKL KTKNGIAGSS LPPPPIKHNM ENSBTAP00000020940/1-580 NSLPPATIAP PKPASWADIA SKPAKQQPKL KTKNGIAGSS LPPPPIKHNM 351 400 BACU003270/1-614 DIGTWDNKGP VAKTPSQALV QNIGQQPTQG SPQPVGQQAN NSPPVAQASV bmy_08019T0/1-689 DIGTWDNKGP VAKTPSQALV QNIGQQPTQG SPQPVGQQAN XSPPVAQASV ENSTTRP00000012908/1-573 DIGTWDNKGP VAKTPSQALV QNIGQQPTQG SPQPVGQQAN SSPPAAQASV ENSP00000362918/1-579 DIGTWDNKGP VAKAPSQALV QNIGQ-PTQG SPQPVGQQAN NSPPVAQASV ENSBTAP00000020940/1-580 DIGTWDNKGP VAKAPSQALV QNIGQQPTQG SPQPVGQQAN NSPPVAQASV 401 450 BACU003270/1-614 GQQTQPLPPP PPQPAQLSVQ QQAAQPTRWV APRNRGSGFG HNGVDGNGVG bmy_08019T0/1-689 GQQTQPLPPP PPQPAQLSVQ QQAAQPTRWV APRNRGSGFG HNGVDGNGVG ENSTTRP00000012908/1-573 GQQTQPLPPP PPQPAQLSVQ QQAAQPTRWV APRNRGSGFG HNGVDGNGVG ENSP00000362918/1-579 GQQTQPLPPP PPQPAQLSVQ QQAAQPTRWV APRNRGSGFG HNGVDGNGVG ENSBTAP00000020940/1-580 GQQTQPLPPP PPQPAQLSVQ QQAAQPTRWV APRNRGSGFG HNGVDGNGVG 451 500 BACU003270/1-614 QSQAGSGSAP SEPHPVLEKL RSINNYNPKD FDWNLKHGRV FIIKSYSEDD bmy_08019T0/1-689 QSQAGSGSTP SEPHPVLEKL RSINNYNPKD FDWNLKHGRV FIIKSYSEDD ENSTTRP00000012908/1-573 QSQAGSGSTP SEPHPVLEKL RSINNYNPKD FDWNLKHGRV FIIKSYSEDD ENSP00000362918/1-579 QSQAGSGSTP SEPHPVLEKL RSINNYNPKD FDWNLKHGRV FIIKSYSEDD ENSBTAP00000020940/1-580 QTQAGSGSTP SEPHPVLEKL RSINNYNPKD FDWNLKHGRV FIIKSYSEDD 501 550 BACU003270/1-614 IHRSIKYNIW CSTEHGNKRL DAAYRSMNGK GPVYLLFSVN GSGHFCGVAE bmy_08019T0/1-689 IHRSIKYNIW CSTEHGNKRL DAAYRSMNGK GPVYLLFSVN GSGHFCGVAE ENSTTRP00000012908/1-573 IHRSIKYNIW CSTEHGNKRL DAAYRSMNGK GPVYLLFSVN GSGHFCGVAE ENSP00000362918/1-579 IHRSIKYNIW CSTEHGNKRL DAAYRSMNGK GPVYLLFSVN GSGHFCGVAE ENSBTAP00000020940/1-580 IHRSIKYNIW CSTEHGNKRL DAAYRSMNGK GPVYLLFSVN GSGHFCGVAE 551 600 BACU003270/1-614 MKSAVDYNTC AGVWSQDKWK GRFDVRWIFV KDVPNSQLRH IRLENNENKP bmy_08019T0/1-689 MKSAVDYNTC AGVWSQDKWK GRFDVRWIFV KDVPNSQLRH IRLENNENKP ENSTTRP00000012908/1-573 MKSAVDYNTC AGVWSQDKWK GRFDVRWIFV KDVPNSQLRH IRLENNENKP ENSP00000362918/1-579 MKSAVDYNTC AGVWSQDKWK GRFDVRWIFV KDVPNSQLRH IRLENNENKP ENSBTAP00000020940/1-580 MKSAVDYNTC AGVWSQDKWK GRFDVRWIFV KDVPNSQLRH IRLENNENKP 601 650 BACU003270/1-614 VTNSRDTQEV PLEKAKQVLK IIASYKHTTS IFDDFSHYEK RQEEEESVKK bmy_08019T0/1-689 VTNSRDTQEV PLEKAKQVLK IIASYKHTTS IFDDFSHYEK RQEEEESVKK ENSTTRP00000012908/1-573 VTNSRDTQEV PLEKAKQVLK IIASYKHTTS IFDDFSHYEK RQEEEESVKK ENSP00000362918/1-579 VTNSRDTQEV PLEKAKQVLK IIASYKHTTS IFDDFSHYEK RQEEEESVKK ENSBTAP00000020940/1-580 VTNSRDTQEV PLEKAKQVLK IIASYKHTTS IFDDFSHYEK RQEEEESVKK 651 700 BACU003270/1-614 DISSRDELLH FTVIDVRNVK VVGNKRQFCT DCSNGCICIS bmy_08019T0/1-689 DISSRDELLH FTVIDVRNVK VVGNKRHFCT DCSNGCICIS ENSTTRP00000012908/1-573 ---------- ---------- ---------- ---------- ENSP00000362918/1-579 ERQGRGK--- ---------- ---------- ---------- ENSBTAP00000020940/1-580 ERQGRGK--- ---------- ---------- ----------