KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:05 2014 Check: 00 .. Name: ENSP00000378349/1-317 Len: 331 Check: 9585 Weight: 1.00 Name: ENSBTAP00000020950/1-317 Len: 331 Check: 8739 Weight: 1.00 Name: ENSTTRP00000015183/1-331 Len: 331 Check: 1567 Weight: 1.00 Name: bmy_01522T0/1-317 Len: 331 Check: 7978 Weight: 1.00 Name: BACU017875/1-268 Len: 331 Check: 8442 Weight: 1.00 // 1 50 ENSP00000378349/1-317 MRLGPRTAAL GLLLLCAAAA GAGKAEELHY PLGERRSDYD REALLGVQED ENSBTAP00000020950/1-317 MQLGPRPATL GLLLLCAAAA GAGEAEELHY QQGEHRADYD REALLGGQEE ENSTTRP00000015183/1-331 MRLGPRPATL GLLLLCAAAA GAGEAEELHY PRGEHRADYD REALLGSQEE bmy_01522T0/1-317 MRLGSRPATL GLLLLCAAAA GAGEAEELHY PQGEHRADYD REALLGGQEE BACU017875/1-268 ---------- ---------- ---------- ---------- ---------E 51 100 ENSP00000378349/1-317 VDEYVKLGHE EQQKRLQAII KKIDLDSDGF LTESELSSWI QMSFKHYAMQ ENSBTAP00000020950/1-317 VDEYVKLSPE EQHKRLKSII KKIDLDSDGF LTESELSSWI QMSFKHYAMQ ENSTTRP00000015183/1-331 VDEYVKLTPE EQHKRLKSII KKIDLDSDGF LTESELSSWI QMSFKHYAMQ bmy_01522T0/1-317 VDEYVKLTPE EQHKRLKSII EKIDLDSDGF LTESELSSWI QMSFKHYAMQ BACU017875/1-268 VDEYVKLTPE EQHKRLKSII EKIDLDSDGF LTESELSSWI QMSFKHYAMQ 101 150 ENSP00000378349/1-317 EAKQQFVEYD KNSDDTVTWD EYNIQMYDRV IDFDENTALD DAEEESFRK- ENSBTAP00000020950/1-317 EAKQQFIEYD KNSDGSVSWD EYNIQMYDRV IDFVENTALD DAEEESFRQ- ENSTTRP00000015183/1-331 EAKQQFVEYD KNSDGSVSWD EYNIQMYDRV IDFDENTALD DTEEESFRQK bmy_01522T0/1-317 EAKQQFVEYD KNSDASVSWD EYNIQMYDRV IDFDENTALD DAEEESFRL- BACU017875/1-268 EAKQQFIEYD KNSDASVSWD EYNIQMYDRV IDFDENTALD DAEEESFRL- 151 200 ENSP00000378349/1-317 ---------- ---LHLKDKK RFEKANQDSG PGLSLEEFIA FEHPEEVDYM ENSBTAP00000020950/1-317 ---------- ---LHLKDKK RFEKANQDSG PGLNLEEFIA FEHPEEVDYM ENSTTRP00000015183/1-331 FATEKSFSVW LLNLHLKDKK RFEKANQDSG PGLNLEEFIA FEHPEEVDYM bmy_01522T0/1-317 ---------- ---LHLKDKK RFEKANQDSG PGLNLEEFIA FEHPEEVDYM BACU017875/1-268 ---------- ---LHLKDKK RFEKANQDSG PGLNLEEFIA FEHPEEVDYM 201 250 ENSP00000378349/1-317 TEFVIQEALE EHDKNGDGFV SLEEFLGDYR WDPTANEDPE WILVEKDRFV ENSBTAP00000020950/1-317 TEFVIQEALE EHDKDGDGFV SLEEFLGDYR RDPTASEDPE WILVEKDRFM ENSTTRP00000015183/1-331 TEFVIQEALE EHDKNGDGFV SLEEFLGDYR RDPTANEDPE WLLVEKDRFL bmy_01522T0/1-317 AEFVIQEALE EHDKNGDGFV SLEEFLGDYR RDPTAKEDPE WILVEKDRFL BACU017875/1-268 AEFVIQEALE EHDKNGDGFV SLEEFLGDYR RDPTANEDPE WILVEKDRFL 251 300 ENSP00000378349/1-317 NDYDKDNDGR LDPQELLPWV VPNNQGIAQE EALHLIDEMD LNGDKKLSEE ENSBTAP00000020950/1-317 NDYDRDADGR LDPQELLSWV VPNNQGIAQE EARHLIDEMD LNSDRKLSEE ENSTTRP00000015183/1-331 NDYDKDADGR LDPQELLSWV VPNNQGIAQE EALHLIDEVD LNSDRKLSEA bmy_01522T0/1-317 NDYDKDADGR LDPQELLSWV VPNNQGIAQE EALHLIDEMD LNSDRKLSEA BACU017875/1-268 NDYDKDADGR LDPQELLSWV VPNNQGIAQE EALHLIDEMD LNSDRKLSEA 301 350 ENSP00000378349/1-317 EILENPDLFL TSEATDYGRQ LHDDYFYHDE L ENSBTAP00000020950/1-317 EILENQDLFL TSEATDYGRQ LHDEYFYHDE L ENSTTRP00000015183/1-331 EILENQDLFL TSEATDYGRQ LQDEYFYHDE L bmy_01522T0/1-317 EILENQDLFL SSEATDYGRQ LHDEYFYHDE L BACU017875/1-268 EILENQDLFL TSEATDYGRQ LHDEYFYHDE L