KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:06 2014 Check: 00 .. Name: ENSP00000268058/1-882 Len: 976 Check: 3018 Weight: 1.00 Name: ENSBTAP00000020952/1-871 Len: 976 Check: 3541 Weight: 1.00 Name: ENSTTRP00000000056/1-871 Len: 976 Check: 7184 Weight: 1.00 Name: bmy_11980T0/1-854 Len: 976 Check: 4263 Weight: 1.00 Name: BACU017923/1-932 Len: 976 Check: 1352 Weight: 1.00 // 1 50 ENSP00000268058/1-882 --MEPAPARS PRPQQDPARP QEPTMPPPET PSEGRQPSPS PSPTERAPAS ENSBTAP00000020952/1-871 MQQDPEPAGS PGPQQDPALP HSPSMPPPES LSEGHQSSHS DSPTEQ--AT ENSTTRP00000000056/1-871 MQQEPKPAGS PGPQQDPALP HAPTMPPPES LSEGHEHSH- -SPTEQ--AT bmy_11980T0/1-854 ---------- ---------- ----MPPPES LSEGHEPSH- -SPTEQ--AT BACU017923/1-932 ---------- ---------- ----MPPPES LSEGHEPSH- -SPTEQ--AT 51 100 ENSP00000268058/1-882 EEEFQFLRCQ QCQAEAKCPK LLPCLHTLCS GCLEASGMQC PICQAPWPLG ENSBTAP00000020952/1-871 EEEFQFLRCQ GCRAEAKCPK LLPCLHTLCS GCLEESSMQC PVCRAPWPSG ENSTTRP00000000056/1-871 EEEFQFLHCQ GCRAEAKCPK LLPCLHTLCS GCLEEPGRQC PICQAPWPPG bmy_11980T0/1-854 EEEFQFLRCQ GCGAEAKCPK LLPCLHTLCS GCLEEPGMQC PICQAPWPPG BACU017923/1-932 EEEFQFLRCQ GCRAEAKCPK LLPCLHTLCS GCLEEPGMQC PICQAPWPPG 101 150 ENSP00000268058/1-882 ADTPALDNVF FESLQRRLSV YRQIVDAQAV CTRCKESADF WCFECEQLLC ENSBTAP00000020952/1-871 AGTQALDNVF FESLQRRLSV YQQIAREQAF CTRCKEPAHY WCFECEQLIC ENSTTRP00000000056/1-871 PDVQALDNVF FEGLKWRLHA YRQIVDAQAL CTRCKELADY WCFECKQLLC bmy_11980T0/1-854 PDAQALDNVF FESLQRRLSV YRQIVDAQAL CTRCKEPADY WCFECEQLLC BACU017923/1-932 PDAQALDNVF FESLQRRLSV YRQIVDAQAL CTRCKEPADY WCFECEQLLC 151 200 ENSP00000268058/1-882 AKCFEAHQWF LKHEARPLAE LRNQSVREFL DGTRKTNNIF CSNPNHRTPT ENSBTAP00000020952/1-871 TKCFEAHQWF LKHEARPLAE LRSQSVREFL DGTRKSNIIF CSNPNHRSPM ENSTTRP00000000056/1-871 AKCVKAHQWF LKHEARPLAE LRSQSAREFL DDMRKSNNIF CSNPNHRDPT bmy_11980T0/1-854 AKCIEAHQWF LKHEARPLAE LRSQSAREFL DGTSKSNNIF CSNPNHRDPT BACU017923/1-932 AKCIEAHQWF LKHEARPLAE LRSQSARDFL DGTRKSNNIF CSNPNHRNPT 201 250 ENSP00000268058/1-882 LT-------S IYCRGCSKPL CCSCALLDSS HSELKCDISA EIQQRQEELD ENSBTAP00000020952/1-871 LT-------S IYCRGCSKPL CCSCALLDRG HSELKCDISM EIQQRQDELD ENSTTRP00000000056/1-871 LT-------S IYCRGCSKPL CCSCALLDRG HSELKCDIRT EIQQRQEELD bmy_11980T0/1-854 LTRPALCVRS IYCRGCSKPL CCSCALLDRG HSELKCDIRT EIQQRQEELD BACU017923/1-932 LT-------S IYCRGCSKPL CCSCALLDTG HSELKCDIGT EIQQRQEELD 251 300 ENSP00000268058/1-882 AMTQALQEQD SAFGAVHAQM HAAVGQLGRA RAETEELIRE RVRQVVAHVR ENSBTAP00000020952/1-871 TMTQDLQEQD RTFGAAQAQM RSAISQLGRV RADTEEFIRE RVREVVAHVL ENSTTRP00000000056/1-871 VMTQDLQEQD RAFGAAQAQI TSAVNQLGRV RADIEEQIRA GVRQVVEHVL bmy_11980T0/1-854 VMTQDLQEQD RAFGAAQAEM SSAISQLGRV RADTEELIRA HLRQVVEHVL BACU017923/1-932 VMTQDLQEQD RAFGAAQAEM SSAISQLGRV RADTEELIQT HVRQVVEHVL 301 350 ENSP00000268058/1-882 AQERELLEAV DARYQRDYEE MASRLGRLDA VLQRIRTGSA LVQRMKCYAS ENSBTAP00000020952/1-871 EQERELLQGV GARYQRDYEE IAGQLGRLDA VLQRIRMGSV LVQRMKLYAS ENSTTRP00000000056/1-871 DQERQLLEEL NAGYQRNYEE IAGQLGRLDA VLQRIRTGSM LVQRMKLYAS bmy_11980T0/1-854 EVERQLLEGV NARYQRAYEE IAGQLGRLDA VLQRIRTGSV LVQRMKLYAS BACU017923/1-932 ELERQLLEGV NARYQRDYEE IAGQLGRLDA VLQRIRMGSV LVQRMKLYAS 351 400 ENSP00000268058/1-882 DQEVLDMHGF LRQALCRLRQ EEPQSLQAAV RTDGFDEFKV RLQDLSSCIT ENSBTAP00000020952/1-871 DQEVLDMHDF LRKALHQLRQ EEPQSLRATV HTDSFDEFRV RLQDLVSCIT ENSTTRP00000000056/1-871 DQEMLDMHGF LREALHQLRQ EEPQSLRAAV RTDSFDEFKV RLQDLXXXXX bmy_11980T0/1-854 DQEVLDMHGF LREALHQLRQ EEPQSLRAAV RTDSFDEFKV RLQDLVSRIT BACU017923/1-932 DQEVLDMHGF LRKALHQLRQ EEPQSLRAAV RTDSFDEFKV RLQDLVSCIT 401 450 ENSP00000268058/1-882 QGK------- ---------- ---------- ---------- ---------- ENSBTAP00000020952/1-871 RGT------- ---------- ---------- ---------- ---------- ENSTTRP00000000056/1-871 XXX------- ---------- ---------- ---------- ---------- bmy_11980T0/1-854 QAT------- ---------- ---------- ---------- ---------- BACU017923/1-932 QGTAPEGPTT SGGSLKPPVS SNREVNWNMR LDSEFWSAGV RMPYWMQLFP 451 500 ENSP00000268058/1-882 -DAAVSKKAS PEAAST---- ---------- ---------- ---PRDPIDV ENSBTAP00000020952/1-871 -DAALSRRAS PEAAST---- ---------- ---------- ---PRDTCGT ENSTTRP00000000056/1-871 -XAAVNRRAS PEAART---- ---------- ---------- ---PRDTFDV bmy_11980T0/1-854 -DAAVSRRAS PEAART---- ---------- ---------- ---PRDTSDV BACU017923/1-932 GEPAQKLPAH PETLLTLTWI SFFSFFLDRA SGLLPILVIQ VYVPIEDLGP 501 550 ENSP00000268058/1-882 DL-------- --PEEAERVK AQVQALGLAE AQPMAVVQSV PGAHPVPVYA ENSBTAP00000020952/1-871 DP-------- --PEEVPR-- DQMQASGL-- ----AVVQPV PGAHPVPVYA ENSTTRP00000000056/1-871 DP-------- --PEEAQR-- AQVQAPGL-- ----TVVQPV PGAHPVPVYA bmy_11980T0/1-854 DL-------- --PEEAQR-- AQVQVPGL-- ----AVVQPV PGAHPVPVYA BACU017923/1-932 GLTSPPWKAG LMPEEAQR-- AQVQVPGL-- ----AVVQPV PGAHPVPLYA 551 600 ENSP00000268058/1-882 FSIKGPSYGE DVSNTTTAQK RKCSQTQCPR KVIKMESEEG KEARLARSSP ENSBTAP00000020952/1-871 FSIQDPSLRE EGTNTTTPQK RKACQTECPR KAVKMESEEG EESRLAWSSP ENSTTRP00000000056/1-871 YSIKDPSCRE EVSNTATPQK RKSCQTECPR KVIKMESEEE KESRLARSSP bmy_11980T0/1-854 YSIKDHSCRE EVSNTATPQK RKSCQTECPR KVIKMESEEE KESKLARSSP BACU017923/1-932 YSIKDPSCRE EVSNTATPQK RKSCQTECPR KVIKMESEEE KESRLARSSP 601 650 ENSP00000268058/1-882 EQPRPSTSKA VSPPHLDGPP SPRSPVIGSE VFLPNSNHVA SGAGEAEERV ENSBTAP00000020952/1-871 EQPRPSTSRA VSPPHLDGPP SPKSPIVRDE LSLPESNHQT GDPAETEERV ENSTTRP00000000056/1-871 EQPRPSTSKA VSPPHLDRSP SPKTPVIGNE TFLPDSNHAT SDPGEAEERV bmy_11980T0/1-854 EQPRPSTSKA VSPPHLDRVP SPKSPVIGNE TFLPESNHAT SDPGEAEERV BACU017923/1-932 EQPRPSTSKA VSPPHLDRAP SPKSPVIGNE TFLPESNHAT SDPGEAEERV 651 700 ENSP00000268058/1-882 VVISSSEDSD AENSSSRELD DSSSESSDLQ LEGPSTLRVL DENLADPQAE ENSBTAP00000020952/1-871 VVISSSEDSD AENPDSRELA DNSSESSDLQ LEGPSSLGVL DDSPSNSLVE ENSTTRP00000000056/1-871 VVISSSEDSD AENSSSRELA DSSSESSDLQ LEGPMSLGVL DNSLEDSRAE bmy_11980T0/1-854 VVISSSEDSD AENSSSRELA DSSSESSDLQ LEGPSSLGVL DENLEDSQAE BACU017923/1-932 VVISSSEDSD AENSSSRELA DSSSESSDLQ LEGPSSLGVL DENLEDSRAE 701 750 ENSP00000268058/1-882 DRPLVFFDLK IDNETQKISQ LAAVNRESKF RVVIQPEAFF SIYSKAVSLE ENSBTAP00000020952/1-871 DKPLVFFDLK IDNETQKISQ LAAVNQESQF RALIQPEV-L NVYSKAVSLE ENSTTRP00000000056/1-871 DRPLVFFDLK IDHETQKISQ LAAVNQESQF RVIIQPEA-F NIYSKAVSLE bmy_11980T0/1-854 DRPLVFFDLK IDNETQNISQ LAAVNQESQF RVIIQPEA-L NIYSKAVSLE BACU017923/1-932 DRPLVFFDLK IDNETQNISQ LAAVNQESQF RVIIQPEA-F NIYSKAVSLE 751 800 ENSP00000268058/1-882 VGLQHFLSFL SSMRRPILAC YKLWGPGLPN FFRALEDINR LWEFQEAISG ENSBTAP00000020952/1-871 VGLQHFLHFL ASMRQPILAC YKLWGPSLPS FFQALEEMNM LGKFQKSISG ENSTTRP00000000056/1-871 VGLQHFLCFL GSMRRPILAC YKLWGPSLPN FFQALENMNK LGEFQNAISG bmy_11980T0/1-854 VGLQHFLCFL GSMRRPILAC YKLWGPGLPY FFQALENMNK LGEFQNAISG BACU017923/1-932 VGLQHFLCFL GNMRRPILAC YKLWGPGLPY FFQALENMNK LGEFQNAISG 801 850 ENSP00000268058/1-882 FLAALPLIRE RVPGASSFKL KNLAQTYLAR NMSERSAMAA VLAMRDLCRL ENSBTAP00000020952/1-871 FLATLPLIRE CVPGASSFKL KSLAKTYLAR NMSERSALAA VLTMRDLCRL ENSTTRP00000000056/1-871 FLAALPLIRE CVPGASSFKL KSLAKTYLAR NVSGRSALAA VLTMRDLCRL bmy_11980T0/1-854 FLAALPLIRE CVPGASSFKL KSLAKTYLAR NMSERSALAA VLTMRDLCRL BACU017923/1-932 FLAALPLIRE CVPGASSFKL KSLAKTYLAR NMSERSALAA VLTMRDLCRL 851 900 ENSP00000268058/1-882 LEVSPGPQLA QHVYPFSSLQ CFASLQPLVQ AAVLPRAEAR LLALHNVSFM ENSBTAP00000020952/1-871 LEVSPSPQLA LHVHPFSSLQ CFSSLQPLVR AAILPRAEAR LLALHKVTFI ENSTTRP00000000056/1-871 LEVSPGPQLA PHVHSFSSLQ CFASLQPLVR AAVLPRAEAR LLALHLVSFK bmy_11980T0/1-854 LEVSPGPQLA PHVHSFSSLQ CFASLQPLVR AAVLPRAEAR LLALHMVNFK BACU017923/1-932 LEVSPGPQLA PHVHSFSSLQ CFASLQPLVR AAVLPRAEAR LLALHMVNFK 901 950 ENSP00000268058/1-882 ELLSAHRRDR QGGLKKYSRY LSLQTTTLPP AQPAFNLQAL GTYFEGLLEG ENSBTAP00000020952/1-871 ELLTAHHHDP QGGLKKYNRF LSLQSPT--S SQPVFDLHSL GTYFEGLLGA ENSTTRP00000000056/1-871 ELLTAHRHDP QGGLKKYNRF LSLQTPSLPT SQPALNLQAL GTYFEGLLEG bmy_11980T0/1-854 ELLTAHRRDP QGGLRKYNRF LSLQTPSLPA SQPALNLQAL GTYFEGLLEG BACU017923/1-932 ELLTAHRRDP QGGLRKYNRF LCLQTPSLPA SQPALNLQAL GAYFEGLLEG 951 1000 ENSP00000268058/1-882 PALARAEGVS TPLAGRGLAE RASQQS ENSBTAP00000020952/1-871 PASAGAGGVA APPAGHSLAE RATQQT ENSTTRP00000000056/1-871 PASAGAGGIA TPLAGHSLAE RASQQS bmy_11980T0/1-854 PASAGAEGIA TPLAGHSLAE RASQQS BACU017923/1-932 PASAGAEGIA TPLAGHSLAE RASQQS