KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:09 2014 Check: 00 .. Name: ENSP00000331210/1-911 Len: 927 Check: 5749 Weight: 1.00 Name: ENSBTAP00000020965/1-912 Len: 927 Check: 9123 Weight: 1.00 Name: ENSTTRP00000013753/1-898 Len: 927 Check: 9837 Weight: 1.00 Name: bmy_03424T0/1-911 Len: 927 Check: 6720 Weight: 1.00 Name: BACU003932/1-882 Len: 927 Check: 8914 Weight: 1.00 // 1 50 ENSP00000331210/1-911 MAQLFLPLLA ALVLAQAPAA LADVLEGDSS EDRAFRVRIA GDAPLQGVLG ENSBTAP00000020965/1-912 MAPLFLPLLA TLVLAWIPVA LADALEGDSS EDRAFRVRIA GDAPLQGVLG ENSTTRP00000013753/1-898 MALPSLPLLA TLALAWVPAA LADALEGDSS ED-AFRVRIA GVRPQP--TG bmy_03424T0/1-911 MALPSLPLLA TLALAWVPAA LSDALEGDSS EDRAFRVRIA GDAPLQGVLG BACU003932/1-882 MALPSLPLLA TLALACVPAA LADALEGDSS EDRAFRVRIA GDAPLQGVLG 51 100 ENSP00000331210/1-911 GALTIPCHVH YLRPPPSRRA VLGSPRVKWT FLSRGREAEV LVARGVRVKV ENSBTAP00000020965/1-912 GALTIPCHVH YLRPSPSRRA AQGSPRVKWT FLSGGREAEV LVARGLRVKV ENSTTRP00000013753/1-898 GPSPIPC--- VYRSP--QRA APGSPR---K LLSGGREAEV LVARGLRVKV bmy_03424T0/1-911 GALTIPCHVH YLRPPPSRRA AQGSPRVKWT FLSGGREAEV LVARGLRVKV BACU003932/1-882 GALTIPCHVH YLRPPPSRRA AQGSPRVKWT FLSGGREAEV LVARGLRVKV 101 150 ENSP00000331210/1-911 NEAYRFRVAL PAYPASLTDV SLALSELRPN DSGIYRCEVQ HGIDDSSDAV ENSBTAP00000020965/1-912 SEAYRFRVAL PAYPASLTDV SLVLSELRPN DSGIYRCEVQ HGIDDSSDAV ENSTTRP00000013753/1-898 SEAYRFRVAL PAYPASLTDV SLVLSELRPN DSGIYRCEVQ HGIDDSSDAV bmy_03424T0/1-911 SEAYRFRVAL PAYPESLTDV SLVLSELRPN DSGIYRCEVQ HGIDDSSDAV BACU003932/1-882 SEAYRFRVAL PAYPASLTDV SLVLSELRPN DSGIYRCEVQ HGIDDSSDAV 151 200 ENSP00000331210/1-911 EVKVKGVVFL YREGSARYAF SFSGAQEACA RIGAHIATPE QLYAAYLGGY ENSBTAP00000020965/1-912 EVKVKGVVFL YREGSARYAF SFAGAQEACA RIGARIATPE QLYAAYLGGY ENSTTRP00000013753/1-898 EVKVKGVVFL YREGSARYAF SFAGAQEACA RIGARIATPE QLYAAYLGGY bmy_03424T0/1-911 EVKVKGVVFL YREGSARYAF SFAGAQEACA RIGARIATPE QLYAAYLGGY BACU003932/1-882 EVKVKGVVFL YREGSARYAF SFAGAQEACA RIGARIATPE QLYAAYLGGY 201 250 ENSP00000331210/1-911 EQCDAGWLSD QTVRYPIQTP REACYGDMDG FPGVRNYGVV DPDDLYDVYC ENSBTAP00000020965/1-912 EQCDAGWLSD QTVRYPIQTP REACYGDMDG FPGVRNYGVV DPDDLYDVYC ENSTTRP00000013753/1-898 EQCDAGWLSD QTVRYPIQTP REACYGDMDG FPGVRNYGVV DPDDLYDVYC bmy_03424T0/1-911 EQCDAGWLSD QTVRYPIQTP REACYGDMDG FPGVRNYGVV DPDDLYDVYC BACU003932/1-882 EQCDAGWLSD QTVRYPIQTP REACYGDMDG FPGVRNYGVV DPDDLYDVYC 251 300 ENSP00000331210/1-911 YAEDLNGELF LGDPPEKLTL EEARAYCQER GAEIATTGQL YAAWDGGLDH ENSBTAP00000020965/1-912 YAEELNGELF LGAPPDKLTL EEARTYCQER GAKIATTGQL YAAWDGGLDR ENSTTRP00000013753/1-898 YAEELNGELF LGAPADKLTL EEARAYCQER GAKIATTGQL YAAWDGGLDR bmy_03424T0/1-911 YAEELN---- -----DKLTL EEARAYCQER GAKIATTGQL YAAWDGGLDR BACU003932/1-882 YAEELNGELF LGAPPDKLTL EEARAYCQER GAKIATTGQL YAAWDGGLDR 301 350 ENSP00000331210/1-911 CSPGWLADGS VRYPIVTPSQ RCGGGLPGVK TLFLFPNQTG FPNKHSRFNV ENSBTAP00000020965/1-912 CSPGWLADGS VRYPIVTPSQ RCGGGLPGVK TLFLFPNQTG FPNKHSRFNV ENSTTRP00000013753/1-898 CSPGWLADGS VRYPIVTPSQ RCGGGLPGVK TLFLFPNQTG FPNKHSRFNV bmy_03424T0/1-911 CSPGWLADGS VRYPIVTPSQ RCGGGLPGVK TLFLFPNQTG FPNKHSRFNV BACU003932/1-882 CSPGWLADGS VRYPIVTPSQ RCGGGLPGVK TLFLFPNQTG FPNKHSRFNV 351 400 ENSP00000331210/1-911 YCFRDSAQPS AIPEASNPAS NPASDGLEAI VTVTETLEEL QLPQEATESE ENSBTAP00000020965/1-912 YCFRDSAQPS AIPEAANPAS DLASDALEAI VTVTETLEEL KLPQEAVESE ENSTTRP00000013753/1-898 YCFRDSGQPS AIPE----AS DLASDALEAI VTVTETLEEL QLPREAVESE bmy_03424T0/1-911 YCFRDSAQPS AIPEASNPAS DLASDALEAI VTVTETLEEL QLPQEAVESE BACU003932/1-882 YCFRDSAQPS AIPEASNPAS DLASDALEAI VTVTETLEEL QLPQEAVESE 401 450 ENSP00000331210/1-911 SRGAIYSIPI MEDGGGGSST PEDPAEAPRT LLEFETQSMV PPTGFSEEEG ENSBTAP00000020965/1-912 SRGAIYSIPI IEDGGGGSST PEDPAEAPRT LLEFETQSIV PPLGSSEEEG ENSTTRP00000013753/1-898 SRGAIYSIPI MEDGTGGSST PEDPAEAPRT LLEFETQSIV PPLGSSEEEG bmy_03424T0/1-911 SRGAIYSIPI MEDGAGGSST PEDPAEAPRT LLEFETQSIV PPLGSSEEES BACU003932/1-882 SRGAIYSIPI MEDGAGRSST PEDPAEAPRT LLEFETQSIV PPLGSSEEEG 451 500 ENSP00000331210/1-911 KALEEEEKYE DEEEK-EEEE EEEEVEDEAL WAWPSELSSP GPEASLPTEP ENSBTAP00000020965/1-912 KVLEQEEKYR GEEEK-EEEE EEEEVEDEAL WAWPSELSSL DPEAPLPTEP ENSTTRP00000013753/1-898 KVLEEEETYK DEEEKEEEEE EEEEVEDEAL WAWPSELSSL DPEAPLPTEP bmy_03424T0/1-911 KVLEEEEKYQ DEEEK-EEED EEEEVEDEAL WAWPSELSSL DPEAPLPTEL BACU003932/1-882 KVLEEEEKYQ DEEEK-EEED EEEEVEDEAL WAWPSELSSL DPEAPLPTEL 501 550 ENSP00000331210/1-911 AAQEESLSQA --PARAVLQP GASPLPDGES EASRPPRVHG PPTETLPTPR ENSBTAP00000020965/1-912 VP-EESLTQA SPPVRAALQP GVSPPPYDEP EAPRPPRVLG PPTKTLPTPR ENSTTRP00000013753/1-898 AP-EESLSRA SPPVRAVLKP DASPPPYGEP EAPRPPTVLG PPTEALPSPR bmy_03424T0/1-911 AP-EESLSQA SPPVRAVLQP DASLPPYGEP EAPRPPTVLG PPTETLPTPR BACU003932/1-882 AP-EESLSQA SPPVRAVLQP DASPPPYGEP EAPRPPTVLG PPTETLPTPR 551 600 ENSP00000331210/1-911 ERNLASPSPS TLVEAREVGE ATGGPELSGV PRGESEETGS SEGAPSLLPA ENSBTAP00000020965/1-912 EGNLASPPPS TLVGAREIEE ETGGPELSGA PRGESEETGS SEDAPSLLPA ENSTTRP00000013753/1-898 EGNLASPSPS APVGAREIGK ETGGPELSGV PRGESEETGS SEDAPSLLPA bmy_03424T0/1-911 EGNLASPSPS TPVGARERGE ETGGPELSGV PRGESEETGS SEDAPSLLPA BACU003932/1-882 EGNLASPSPS TPVGARERGE ETGGPELSGV PRGESEETGS SEDAPSLLPA 601 650 ENSP00000331210/1-911 TRAPEGTREL EAPSEDNSGR TAPAGTSVQA QPVLPTDSAS RGGVAVVPAS ENSBTAP00000020965/1-912 TRAPGDTRDL ETPSEENSRR TVPAGTSVRA QPVLPTDSAS RGGVAVAPSS ENSTTRP00000013753/1-898 TRAPEGTRDL ETPSEENSGR TVPAGTSVHA QPVLPTDSAS HGGVAVAPSS bmy_03424T0/1-911 TRVPEGTRDL ETPSEENSGR TVPAGTSVHA QPVLPTDSAS HGGVAVAPSS BACU003932/1-882 TRVPEGTRDL ETPSEENSGR TVPAGTSVHA QPVLPTDSAS HGGVAVAPSS 651 700 ENSP00000331210/1-911 GDCVPSPCHN GGTCLEEEEG VRCLCLPGYG GDLCDVGLRF CNPGWDAFQG ENSBTAP00000020965/1-912 GDCVPSPCHN GGTCLEEEEG VRCLCLPGYG GDLCDVGLHF CSPGWDAFQG ENSTTRP00000013753/1-898 GYCVPSPCHN GGTCLEEEEG VRCLCLPGYG GDLCDVGLHF CSPGWDAFQG bmy_03424T0/1-911 GYCVPSPCHN GGTCLEEEEG VRCLCLPGYG GDLCDVGLRF CSPGWDAFQG BACU003932/1-882 GYCVRSPCHN GGTCLEEEEG VRCLCLPGYG GDLCDVGLRF CSPGWDAFQG 701 750 ENSP00000331210/1-911 ACYKHFSTRR SWEEAETQCR MYGAHLASIS TPEEQDFINN ---------- ENSBTAP00000020965/1-912 ACYKHFSARR SWEEAENKCR MYGAHLASIS TPEEQDFINN ---------- ENSTTRP00000013753/1-898 ACYKHFSTRR SWEEAENKCR MYGAHLASVS TPEEQDFINN ---------- bmy_03424T0/1-911 ACYKHFSTRR SWEEAENKCR MYGAHLASIS TPEEQDFINS GLGTGREATL BACU003932/1-882 ACYKHFSTRR SWEEAENKCR MYGAHLASIS TPEEQDFINN ---------- 751 800 ENSP00000331210/1-911 ---RYREYQW IGLNDRTIEG DFLWSDGVPL LYENWNPGQP DSYFLSGENC ENSBTAP00000020965/1-912 ---RYREYQW IGLNDRTIEG DFLWSDGVPL LYENWNPGQP DSYFLSGENC ENSTTRP00000013753/1-898 ---RYREYQW IGLNDRTIEG DFLWSDGVSL LYENWNPGQP DSYFLSGENC bmy_03424T0/1-911 VTYRYREYQW IGLNDRTIEG DFLWSDGVPL LYENWNPGQP DSYFLSGENC BACU003932/1-882 ---RYREYQW IGLNDRTIEG DFLWSDGVPL LYENWNPGQP DSYFLSGENC 801 850 ENSP00000331210/1-911 VVMVWHDQGQ WSDVPCNYHL SYTCKMGLVS CGPPPELPLA QVFGRPRLRY ENSBTAP00000020965/1-912 VVMVWHDQGQ WSDVPCNYHL SYTCKMGLVS CGPPPELPLA EVFGRPRLRY ENSTTRP00000013753/1-898 VVMVWHDQGQ WSDVPCNYHL SYTCKMGLVS CGPPPELPLA RVFGRPRLRY bmy_03424T0/1-911 VVMVWHDQGQ WSDVPCNYHL SYTCKMGLVS CGPPPELPLA RVFGRPRLRY BACU003932/1-882 VVMVWHDQGQ WSDVPCNYHL SYTCKMGLVS CGPPPELPLA RVFGRPRLRY 851 900 ENSP00000331210/1-911 EVDTVLRYRC REGLAQRNLP LIRCQENGRW EAPQISCVPR RPARALHPEE ENSBTAP00000020965/1-912 EVDTVLRYRC REGLTQRNLP LIRCQENGRW GLPQISCVPR RPARALRPVE ENSTTRP00000013753/1-898 EVDTVLRYRC LEGLAQRNLP LIRCQENGRW EPPQISCVPR RPARALRPIK bmy_03424T0/1-911 EVDTVLRYRC REGLAQRNLP LIRCQENGRW EPPQISC--- --ARALRPXK BACU003932/1-882 EVDTVLRYRC REGLAQRNLP LIRCQENGRW EPPQISCVPR RPED------ 901 950 ENSP00000331210/1-911 DPEGRQGRLL GRWKALLIPP SSPMPGP ENSBTAP00000020965/1-912 AQEGRPWRLV GHWKARLNPS PNPAPGP ENSTTRP00000013753/1-898 APEGHQRRLL GSWKARLTPP PNPAPGP bmy_03424T0/1-911 APEGRQRRLL GSWKARLTPP PNPAPGP BACU003932/1-882 ---------- ---------- --PHV--