KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:15 2014 Check: 00 .. Name: ENSP00000247153/1-469 Len: 595 Check: 8782 Weight: 1.00 Name: ENSBTAP00000021009/1-464 Len: 595 Check: 3295 Weight: 1.00 Name: BACU008463/1-502 Len: 595 Check: 8837 Weight: 1.00 Name: bmy_15682T0/1-405 Len: 595 Check: 7721 Weight: 1.00 Name: ENSTTRP00000009486/1-469 Len: 595 Check: 50 Weight: 1.00 // 1 50 ENSP00000247153/1-469 MITEGAQAPR LLLPPL-LLL LTLPATGSDP VLCFTQYEES SGKCKGLLGG ENSBTAP00000021009/1-464 -MPAQAQAL- LLLLLLPLLL LTLPATGSDP VFCFAQYEES TGKCKDLLGR BACU008463/1-502 -MPTRVQAHR LLLLLLPLPL LTLPATGSDP VLCFTQYEES TGQCKGLLGG bmy_15682T0/1-405 -MPTRAQAHR LLLLPLPLLL LTLSATGSDP VLCFTQYEES TGKCKGLLGG ENSTTRP00000009486/1-469 -MPTRAQAHR LLLLPLPLLL LTLPATGSDP VLCFTQYEES TGKCKGLLGG 51 100 ENSP00000247153/1-469 GVSVEDCCLN TAFAYQKRSG GLCQPCRSPR WSLWSTWAPC SVTCSEGSQL ENSBTAP00000021009/1-464 GVSVEDCCLN AGYAFQKPGS NLCMACRLPQ WSPWSAWTPC SVTCTEGSQL BACU008463/1-502 GVSTEDCCLN ADYAFQEPGS KLCMACRLPQ WSPWSEWVPC SVTCMEGSQL bmy_15682T0/1-405 GVSTEDCCLN ADYAFQEPGS KLCMACR--- ---------- ---------- ENSTTRP00000009486/1-469 GVSTEDCCLN ADYAFQELGS KLCMACRLPQ WSPWSEWAPC SVTCTEGSQL 101 150 ENSP00000247153/1-469 RYRRCVGWNG QC-SGKVAPG TLEWQLQACE DQQCCPEMGG WSGWGPWEPC ENSBTAP00000021009/1-464 RHRHCTGWGE QCFPEKVEPG TFQWQLQACE DQPCCPEMGG WSDWGPWAAC BACU008463/1-502 RHRRCIGWGG QC-PEKVEPG NLQWQLRACE DKPCCPEMGG WSNWGPWASC bmy_15682T0/1-405 ----CIA--- ---------- ------EVVG SQRISEEMGG WSNWGPWASC ENSTTRP00000009486/1-469 RHRRCIGWGG QC-PQKVEPG TLQWQLQACE DKPCCPEMGG WSDWGPWASC 151 200 ENSP00000247153/1-469 SVTCSKGTRT RRRACNHPAP KCGGHCPGQA QESEACDTQQ VCPTHGAWAT ENSBTAP00000021009/1-464 SVTCSRGIKI RRRACNRPTP KCGGHCIGEA QESEPCDTKQ VCPTHGAWAA BACU008463/1-502 SVTCSKGTRI RHRACDRPTP KCGGHCPGEA QESEACDTKQ VC-------- bmy_15682T0/1-405 SVTCSKGTRI RRRACDRPTP KCGGHCPGQA QESEACDTKQ VCPTHGAWAA ENSTTRP00000009486/1-469 SVTCSKGTRI RRRACDRPTP KCGGHCPGEA QESETCDTEQ VCPTHGAWAA 201 250 ENSP00000247153/1-469 WGPWTPCSAS CHGGPHEPKE TRSRKCSAPE PSQKPPGKPC PGLAYEQRRC ENSBTAP00000021009/1-464 WGPWGPCSGT CHGGPSAAVE RRSRTCSAPE PSTQPPGNPC SGSPYEQRVC BACU008463/1-502 ---------- ---------- ---------- ---------- ---------- bmy_15682T0/1-405 WGPWGPCSGT CHGGPKAPEE RRSRTCSAPE PSTQPPGNPC PGSSSEQRAC ENSTTRP00000009486/1-469 WGPWGPCSGT CRNGPKASEE RRSRTCSAPE PSTQPPGNPC PGPSSEQRAC 251 300 ENSP00000247153/1-469 TGLPPCPVAG GWGPWGPVSP CPVTCGLGQT MEQRTCNHPV PQHGGPFCAG ENSBTAP00000021009/1-464 TGLPPCPVAG GWGPWGAVSP CPVTCGLGKI QEQRTCDHPV PQHGGPFCVG BACU008463/1-502 ------PMAG GWGPWGAVSP CPVTCGLGQT REQRTCDRPV PQHGGPFCVG bmy_15682T0/1-405 TGLPPCPVAG GWGPWGAVSP CPVTCGLGQT REQRTCDRPV PQHGGPFCVG ENSTTRP00000009486/1-469 TGLPPCPVAG GWGPWGAVSP CPVTCGLGQT RERRTCDHPV PQHGGPFCVG 301 350 ENSP00000247153/1-469 DATRTHICNT AVPCPVDGEW DSWGEWSPCI RRNMKSISCQ EIPGQQSRGR ENSBTAP00000021009/1-464 DGTRTHVCNT AVHCPVNGQW GLWGEWSNCI RPSIKQISCQ EIPGQQTRSR BACU008463/1-502 DATRTHVCNT AVHCPVNGEW ELWAEWSTCI RRNIKHISCQ EIPGQQTRSR bmy_15682T0/1-405 DATRTHICNT AVHCPVNGEW ELWGEWSTCI RRSIKHISCQ EIPGQQTRSR ENSTTRP00000009486/1-469 DATRTHICNT AVHCPVNGEW ELWGEWSTCI RRSIKHISCQ EIPGQQTRSR 351 400 ENSP00000247153/1-469 TCRGRKFDGH RCAGQQQDIR HCYSIQHCPL ---------- ---------- ENSBTAP00000021009/1-464 ICKGRKFDGQ RCVGKQQDIR HCYNIQRCFL ---------- ---------- BACU008463/1-502 LCKGRKFDGQ RCSGEQQDIR HCYNIQRCLW ---------- ---------- bmy_15682T0/1-405 LCKGRKFDGQ RCSGEQQDIR HCYNIQRCLY RMSLQPLSHH PTKTSNSDSG ENSTTRP00000009486/1-469 LCKGRKFNGQ RCSGEQQDIR HCYNIQRCPW ---------- ---------- 401 450 ENSP00000247153/1-469 -------KGS WSEWSTWGLC MPPCGPNPTR ARQRLCTPLL PKYP-PTVSM ENSBTAP00000021009/1-464 -------QGS WSEWSTWGLC IPPCGPNPIR TRQRLCQATL PKFS-PTVTM BACU008463/1-502 -------KGS WSEWSTWGLC MPPCGPNPIR TRQRLCKATL PKFSAKYFKG bmy_15682T0/1-405 TPPLMAGKGS WSEWSTWGLC MPPCGPNPIR TRQRLCKATL PKFSYPSF-- ENSTTRP00000009486/1-469 -------KGS WSEWSTWGLC MPPCGPNPNR TRQRLCKATL PDFS-PTVTT 451 500 ENSP00000247153/1-469 VEGQGEKNV- ---------- ---------- ---------- ---------- ENSBTAP00000021009/1-464 VEGQGEKNV- ---------- ---------- ---------- ---------- BACU008463/1-502 KKIHGEIDIK VEQAEFSDLN LVAHANGGFS VDMEVLRNGV KVVRSLKPDF bmy_15682T0/1-405 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009486/1-469 VEGQGEKNV- ---------- ---------- ---------- ---------- 501 550 ENSP00000247153/1-469 ---------- ---------- ---------- --------TF WGRPLPRCEE ENSBTAP00000021009/1-464 ---------- ---------- ---------- --------TF WGKPFVQCDV BACU008463/1-502 VLIRQHAFSM ARNGDYRSLV IGLQYAGIPS VNSLHSVYNF CDKPWVFAQM bmy_15682T0/1-405 ---------- ---------- ---------- ---------- --------DL ENSTTRP00000009486/1-469 ---------- ---------- ---------- --------TF WGKPSALCDV 551 600 ENSP00000247153/1-469 LQGQKLVVEE KRPCLHVPAC KDPEEEEL-- ---------- ----- ENSBTAP00000021009/1-464 LQGQKVMVEE KRPCLHVPPC KEP------- ---------- ----- BACU008463/1-502 VRLHKKLGTE EFPLIDQTFY PNHKEMIMVL TSAAHVLKLE RFRED bmy_15682T0/1-405 LV-------- ---------- ---------- ---------- ----- ENSTTRP00000009486/1-469 LQGQKVVVEE KRPCLHVPPC KDPEDEKL-- ---------- -----