KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:13:16 2014  Check: 00 ..

 Name: bmy_05798T0/1-240         Len:    246  Check:  3060  Weight:  1.00
 Name: ENSP00000449751/1-201     Len:    246  Check:  3502  Weight:  1.00
 Name: ENSBTAP00000021025/1-202  Len:    246  Check:  7985  Weight:  1.00
 Name: BACU007987/1-202          Len:    246  Check:  7261  Weight:  1.00
 Name: ENSTTRP00000004404/1-203  Len:    246  Check:  1231  Weight:  1.00

//


                          1                                                   50
bmy_05798T0/1-240         RWRKGCRRRS WRASRPAPSR PVWPGRCHPP ACPGCPVPCP HPVMTLRPSL 
ENSP00000449751/1-201     ---------- ---------- ---------- ---------- ---MTLRPSL 
ENSBTAP00000021025/1-202  ---------- ---------- ---------- ---------- ---MTLRPSL 
BACU007987/1-202          ---------- ---------- ---------- ---------- ---MTLRPAL 
ENSTTRP00000004404/1-203  ---------- ---------- ---------- ---------- ---MTLRPSL 


                          51                                                 100
bmy_05798T0/1-240         LPLRLLLL-- LQFCGAVCRA EAGFETESPV RTLQVETLVE PPEPCAEPAA 
ENSP00000449751/1-201     LPLHLLLL-- LLLSAAVCRA EAGLETESPV RTLQVETLVE PPEPCAEPAA 
ENSBTAP00000021025/1-202  LPLRLLLLL- LLLRGAVCQA EAGSETESPV RTLQVETLVE PPEPCAEPAT 
BACU007987/1-202          LPLRLLLLL- LLLCGAVCRA EAGFETESPV RTLQVETLVE PPEPCAEPAA 
ENSTTRP00000004404/1-203  LPLRVLLLLP LLLSGAVCRA DAGFETESPV RTLQVETLVE PPEPCAEPAA 


                          101                                                150
bmy_05798T0/1-240         FGDTLHIHYS GSLVDGRIFD TSLTRDPLVI ELGQKQVIPG LEQSLLDMCV 
ENSP00000449751/1-201     FGDTLHIHYT GSLVDGRIID TSLTRDPLVI ELGQKQVIPG LEQSLLDMCV 
ENSBTAP00000021025/1-202  FGDTLHIHYS GSLVDGRIFD TSLTRDPLVI ELGQKQVIPG LEQSLLDMCV 
BACU007987/1-202          FGDTLHIHYS GSLVDGRIFD TSLTRDPLVI ELGQKQVIPG LEQSLLDMCV 
ENSTTRP00000004404/1-203  FGDTLHIHYS GSLVDGRIFD TSLTRDPLVI ELGQKQVIPG LEQSLLDMCV 


                          151                                                200
bmy_05798T0/1-240         GFESWVTCTG ILTF-TSSLP ---PADAELH FDVELIALIR ANYWQKLVKG 
ENSP00000449751/1-201     GEKRRAIIPS HLAYGKRGFP PSVPADAVVQ YDVELIALIR ANYWLKLVKG 
ENSBTAP00000021025/1-202  GEKRRVIIPS HLAYGKRGFP PSIPADAELH FDVELIALIR ANYWQKLVKG 
BACU007987/1-202          GEKRRVIIPS HLAYGKRGFP PSIPADAELH FDVELIALIR ANYWQKLVKG 
ENSTTRP00000004404/1-203  GEKRRVIVPS HLAYGKRGFP PSIPADAELH FDVELIALIR ANYWQKLVKG 


                          201                                                250
bmy_05798T0/1-240         ILPLVGMAMV PTLLGLIGYH LYKKASRPKV SKKKLKEEKR NKSKKK 
ENSP00000449751/1-201     ILPLVGMAMV PALLGLIGYH LYRKANRPKV SKKKLKEEKR NKSKKK 
ENSBTAP00000021025/1-202  ILPLVGMAMV PALLGLIGYH LYRKASSPKI SKKKLKEEKR NKSKKK 
BACU007987/1-202          ILPLVGMAMV PTLLGLIGYH LYKKASRPKV SKKKLKEEKR NKSKKK 
ENSTTRP00000004404/1-203  ILPLVGMAMV PTLLGLIGYH LYKKASRPKV SKKKLKEEKR NKSKKK