KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:17 2014 Check: 00 .. Name: ENSP00000222248/1-643 Len: 660 Check: 633 Weight: 1.00 Name: ENSBTAP00000021031/1-623 Len: 660 Check: 9151 Weight: 1.00 Name: ENSTTRP00000008513/1-639 Len: 660 Check: 8030 Weight: 1.00 Name: bmy_02610T0/1-485 Len: 660 Check: 2297 Weight: 1.00 Name: BACU016674/1-625 Len: 660 Check: 8779 Weight: 1.00 // 1 50 ENSP00000222248/1-643 MEAVETGERP TFGAWDYGVF ALMLLVSTGI GLWVGLARGG QRSAEDFFTG ENSBTAP00000021031/1-623 MATVEAKERA TFGAWDYGVF ALMLLVSTGI GLWVGVARGG QRSAEDFFTG ENSTTRP00000008513/1-639 MAAVEAGARA TFGAWDYGVF ALMLLVSTGI GLWVGLARGG QRSAEDFFTG bmy_02610T0/1-485 MAAVEAGARA TFGAWDYGVF ALMLLVSTGI GLWVGLARGG QRSAEDFFTG BACU016674/1-625 MAAVEAGAQA TFGVWDYGVF ALMLLVSTGI GLWVGLARGG QRSAEDFFTG 51 100 ENSP00000222248/1-643 GRRLAALPVG LSLSASFMSA VQVLGVPSEA YRYGLKFLWM CLGQLLNSVL ENSBTAP00000021031/1-623 GRRLSALPVG LSLAASFMSA VQVLGVPAEA YRYGLKFLWM CLGQLLNSLL ENSTTRP00000008513/1-639 GRRLTALPVG LSLAASFMSA VQVLGVPAEA YRYGLKFLWM CLGQLLNSLL bmy_02610T0/1-485 GRRLTALPVG LSLAASFMSA VQVLGVPAEA YRYGLKFLWM CLGQLLNSLL BACU016674/1-625 GRRLTALPVG LSLAASFMSA VQVLGVPAEA YRYGLKFLWM CLGQLLNSLL 101 150 ENSP00000222248/1-643 TALLFMPVFY RLGLTSTYEY LEMRFSRAVR LCGTLQYIVA TM-------- ENSBTAP00000021031/1-623 TALLFLPVFY RLGLTSTYEY LEMRFSRAVR LCGTLQYLVA TM-------- ENSTTRP00000008513/1-639 TALLFLPVFY RLGLTSTYQY LELRFSRAVR LCGTLQYLVA TM-------- bmy_02610T0/1-485 TALLFLPVFY RLGLTSTYQY LELRFSRAVR LCGTLQYLVA TVSGLGPALA BACU016674/1-625 TALLFLPVFY RLGLTSTYQY LELRFSRAVR LCGTLQYLVA TM-------- 151 200 ENSP00000222248/1-643 --------LY TGIVIYAPAL ILNQVTGLDI WASLLSTGII CTFYTAVGGM ENSBTAP00000021031/1-623 --------LY TGIVIYAPAL ILNQVTGLDI WASLLSTGII CTFYTTVGGM ENSTTRP00000008513/1-639 --------LY TGIVIYAPAL ILNQVTGLDI WASLLSTGVI CTFYTTVGGM bmy_02610T0/1-485 PRVRLGSNLV TG-------- -------LDI WASLLSTGVI CTFYTTVGGM BACU016674/1-625 --------LY TGIVIYAPAL ILNQG----- ----LTRG-- ------RGGM 201 250 ENSP00000222248/1-643 KAVVWTDVFQ VVVMLSGFWV VLARGVMLVG GPRQVLTLAQ NHSRINLMDF ENSBTAP00000021031/1-623 KAVIWTDVFQ VLVMLSGFWV VLARGTALVG GPGQVLELAK NHSRINLMDF ENSTTRP00000008513/1-639 KAVIWTDVFQ VLVMLSGFWV VLARGTMLVG GPGQVLELAK NHSRINLMDF bmy_02610T0/1-485 KAVIWTDVFQ VLVMLSGFWV VLARGTMLVG GPGQVLELAK NHSRINLMDF BACU016674/1-625 KAVIWTDVFQ VLVMLSGFWV VLARGTMLVG GPGQVLELAK NHSRINLMDF 251 300 ENSP00000222248/1-643 NPDPRSRYTF WTFVVGGTLV WLSMYGVNQA QVQRYVACRT EKQAKLALLI ENSBTAP00000021031/1-623 DLDPRSRYTF WTFVVGGTLV WLSMYGVNQA QVQRYVACRT EKQAKLAVLI ENSTTRP00000008513/1-639 DLDPRSRYTF WTFVVGGTLV WLSMYGVNQA QVQRYMACRT EKQAKLAVLV bmy_02610T0/1-485 DLDPRSRYTF WTFVVGGTLV WLSMYGVNQA QVQRYMACRT EKQAKLAVLI BACU016674/1-625 DLDPRSRYTF WTFVVGGTLV WLSMYGVNQA QVQRYMACRT EKQAKLAVLI 301 350 ENSP00000222248/1-643 NQVGLFLIVS SAACCGIVMF VFYTDCDPLL LGRISAPDQY MPLLVLDIFE ENSBTAP00000021031/1-623 NQLGLFLIVS SAAACGVVMF TFYLDCDPLL AGRISAPDQY MPLLVLDIFE ENSTTRP00000008513/1-639 NQLGLFLIVS SAAFCGIIMF TFYLDCDPLL AGRISAPDQY MPLMVLDIFV bmy_02610T0/1-485 NQLGLFVIVS SAAACGIIMF TFYLDCDPLL AGRISAPDQ- ---------- BACU016674/1-625 NQLGLFLIVS SAAACGIIMF TFYLDCDPLL SGRISAPDQY MPLMVLDIFE 351 400 ENSP00000222248/1-643 DLPGVPGLFL ACAYSGTLST ASTSINAMAA VTVEDLIKPR LRSLAPRKLV ENSBTAP00000021031/1-623 DLPGVPGLFL ACAYSGTLST ASTSINAMAA VTVEDLIKPR LPSLAPRRLV ENSTTRP00000008513/1-639 DLPGVPGLFL ACAYSGTLST ASTSINAMAA VTVEDLIKPR LPSLTPRRLV bmy_02610T0/1-485 ---------- ---------- ---------- ---------- ---------- BACU016674/1-625 DLPGVPGLFL ACAYSGTLST ASTSINAMAA VTVEDLIKPR LPSLTPRRLV 401 450 ENSP00000222248/1-643 IISKGLSLIY GSACLTVAAL SSLLGGGVLQ GSFTVMGVIS GPLLGAFILG ENSBTAP00000021031/1-623 IISKGLSLIY GSACLTVAAL SSLLGGGVLQ GSFTVMGVIS GPLLGAFILG ENSTTRP00000008513/1-639 IISKGLSLIY GSACLTVAAL SSLLGGGVLE GSFTIMGVIS GPLLGSFFLG bmy_02610T0/1-485 ---------- ---------- ---------- GSFTIMGVIS GPLLGAFILG BACU016674/1-625 IISKGLSLIY GSACLTVAAL SSLLGGGVLE GSFTIMGVIS GPLLGAFILG 451 500 ENSP00000222248/1-643 MFLPACNTPG VLAGLGAGLA LSLWVALGAT LYPPSEQTMR VLPSSAARCV ENSBTAP00000021031/1-623 MFVPTCNTPG VLSGLAVGLA LSLWVAVGAT LYPPSAQSMG VLPSSASGCA ENSTTRP00000008513/1-639 MILPACTILG SLSGMAEAV- LTLWGGVRGT LYPP-ESAMM VLTSSPARCA bmy_02610T0/1-485 MFLPACNTLG VLSGLAVGLA LSLWVAVGAT LYPPSAQSMG VLPSSAAGC- BACU016674/1-625 MFLPACNTLG VLSGLAVGLA LSLWVAVGAT LYPPSAQSMG VLPSSAAGCA 501 550 ENSP00000222248/1-643 ALSVNASGLL DPALLPANDS SRAPSSGMDA SRPALADSFY AISYLYYGAL ENSBTAP00000021031/1-623 VPSANASGLL DP-LLTANAS SRVSSLEMDP DQQTLADNFY AISYLYYGAL ENSTTRP00000008513/1-639 EHSASPSGIV HP-ILAPNAS SRASC-EMDP DQPTLTDSFY AISYLYYGAL bmy_02610T0/1-485 ---------- ---------- ---------- ---------- ---------- BACU016674/1-625 VPSANASGLL DP-LLVANAS SRASSLEMDP DQHTLADSFY AISYLYYGAL 551 600 ENSP00000222248/1-643 GTLTTVLCGA LISCLTGPTK RSTLAPGLLW WDLARQTASV APKEEVAILD ENSBTAP00000021031/1-623 GTVCTVLCGA LVSCLTGPTK RSALGPGLLW WDLMRQTASV APKEEVATLD ENSTTRP00000008513/1-639 GTVSTVLCGA LVSCLTGPTK RSALGPGLLW WDLTRQTASV APKEEVATLD bmy_02610T0/1-485 ---------- -------PTK RSALGPGLLW WDLTRQTASV APKEEVATLD BACU016674/1-625 GTLSTVLCGA LVSCLTGPTK RSALGPGLLW WDLTRQTASV APKEEVATLD 601 650 ENSP00000222248/1-643 DNLVKGPEEL PTGNK-KPPG FLPTNEDRLF FLGQKELEGA GSWTPCVGHD ENSBTAP00000021031/1-623 DGLMKGSDMV SHQTQWKPPG --PT------ -LGS-EKDPR SSWSDLS--- ENSTTRP00000008513/1-639 DSLMKGAEEL PPGTK-RPPD FLPTDEDHLL FLGQKEMNGA GSRTPGSEHD bmy_02610T0/1-485 DSLMKGAEEL PPGTK-RPPD FLPPDEDHQL FLGQKEMNGA GSRTPGSEHD BACU016674/1-625 DSLMKGAEEL PPGAK-RPPD FLPPDEDHQL FLGQKEMNGA GSRTPGSEHD 651 700 ENSP00000222248/1-643 GGRDQQETNL ENSBTAP00000021031/1-623 -------ANL ENSTTRP00000008513/1-639 KGLNLRETDL bmy_02610T0/1-485 KGLDPRETDL BACU016674/1-625 KGLDLRETDL