KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:18 2014 Check: 00 .. Name: ENSTTRP00000012093/1-964 Len: 973 Check: 1167 Weight: 1.00 Name: ENSP00000349208/1-973 Len: 973 Check: 879 Weight: 1.00 Name: ENSBTAP00000021039/1-969 Len: 973 Check: 9556 Weight: 1.00 Name: bmy_00945T0/1-541 Len: 973 Check: 6290 Weight: 1.00 Name: BACU001986/1-91 Len: 973 Check: 6097 Weight: 1.00 // 1 50 ENSTTRP00000012093/1-964 MDPVRPPFRG PSPVHPFQY- -VRMPGSWQQ APKPLDPALG RAGPAGRGHV ENSP00000349208/1-973 MDPFRPSFRG QSPIHPSQCQ AVRMPGCWPQ ASKPLDPALG RGAPAGRGHV ENSBTAP00000021039/1-969 MDPVRPRFRG LSPVHPSQS- -VRMPGSWPQ APKPLDPALS RAGPAGRGHV bmy_00945T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012093/1-964 FEKREEPGPQ SG----ESMG LVSMFRGLGL ETVSRTPVEQ EMPPLGRGIL ENSP00000349208/1-973 FGKPEEPSTQ RGPAQRESVG LVSMFRGLGI ETVSKTPLKR EMLPSGRGIL ENSBTAP00000021039/1-969 FGKQKEPSPQ SGPVQKESVG LVSMFRGLGL ETASQTPLKR EVPPLGRGIL bmy_00945T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000012093/1-964 GRGLSTSMAR KDKEAPHPTF LDPSVLASGD SKMAEASVGW SRTLGRGNLD ENSP00000349208/1-973 GRGLSANLVR KDREELSPTF WDPKVLAAGD SKMAETSVGW SRTLGRGSSD ENSBTAP00000021039/1-969 GLGLSSSMAC KDKEEPHPTF LDPSSLAAGD SKMAEASVGW NRMLRRGTLD bmy_00945T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000012093/1-964 AFLLPMGRAA GGIGRGVYKA PGALSLNSQD PAQLSSQPPL TPAPLHSLDC ENSP00000349208/1-973 ASLLPLGRAA GGISREVDKP PCTFSTPSRG PPQLSSPPAL PQSPLHSPDR ENSBTAP00000021039/1-969 ASLLPVGRAA -GLGRGIYKA PGALSPPYQD PAQLSPLPAL PQAPLYSLDT bmy_00945T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000012093/1-964 PPLGTAEHKE KEPFVKQGSK GTPQSLGLNL IKIQCRNEAV YQYHVTFSGN ENSP00000349208/1-973 PLVLTVEHKE KELIVKQGSK GTPQSLGLNL VKIQCHNEAV YQYHVTFSPN ENSBTAP00000021039/1-969 PPLGTAERK- KELFVKQGSK GTPQSLGLNL IKIQCHNEAV YQYHVTFSPN bmy_00945T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000012093/1-964 LQLISMSSQF SKDHQAVTGN ITAFDGSILY LPVKLKQVLE LKSQRKTDSA ENSP00000349208/1-973 VECKSMRFGM LKDHQAVTGN VTAFDGSILY LPVKLQQVLE LKSQRKTDSA ENSBTAP00000021039/1-969 VECKSMRFGM LKDHQAVTGN VTAFDGSILY LPVRLQQVLE LKSQRKTDSA bmy_00945T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000012093/1-964 EIIIKIQLTK ILEPCSDLCV PFYNVVFRRV MKLLDMKLVG RNFFDPTSAM ENSP00000349208/1-973 EISIKIQMTK ILEPCSDLCI PFYNVVFRRV MKLLDMKLVG RNFYDPTSAM ENSBTAP00000021039/1-969 EITIKIQLTK ILEPCSDLCI PFYNVVFRRV MKLLDMKLVG RNFYDPTSAM bmy_00945T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000012093/1-964 VLQQHRLQIW PGYAASIRRT DGGLFLLADV SHKVIRNDSV LDIMHAMYQE ENSP00000349208/1-973 VLQQHRLQIW PGYAASIRRT DGGLFLLADV SHKVIRNDCV LDVMHAIYQQ ENSBTAP00000021039/1-969 VLQQHRLQIW PGYAASIRRT DGGLFLLADV SHKVIRNDSV LDIMHTMYLQ bmy_00945T0/1-541 ---------- ---------- ---------- ---------- ------MYQQ BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000012093/1-964 HKEDFQDECT KLLVGSIVIT RYNNRTYRVD DVDWNKTPKD SFTMSDGKEI ENSP00000349208/1-973 NKEHFQDECT KLLVGNIVIT RYNNRTYRID DVDWNKTPKD SFTMSDGKEI ENSBTAP00000021039/1-969 NKENFQDECT KLLVGNIVIT RYNNRTYRID DVDWNKTPKD SFIMSDGTEI bmy_00945T0/1-541 NKEDFQDECT KLLVGSIVIT RYNNRTYRID DVDWNKTPKD SFTMSDGKEI BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000012093/1-964 TFLEYYSKNY GITIKEKDQP LLIHRPSERQ NSQGMLLKGE ILLLPELSFM ENSP00000349208/1-973 TFLEYYSKNY GITVKEEDQP LLIHRPSERQ DNHGMLLKGE ILLLPELSFM ENSBTAP00000021039/1-969 TFLDYYSKNY GITVKEEDQP LLIHRPSERQ NNQGMLLKSE ILLLPELSFM bmy_00945T0/1-541 TFLEYYSKNY GITIKEKDQP LLIHRPSERQ NNQGMLLKGE ILLLPELSFM BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000012093/1-964 TGIPEKMKKD FRAMKDLTQQ INLSPKQHHN ALKCLLQRIS KNETANSELT ENSP00000349208/1-973 TGIPEKMKKD FRAMKDLAQQ INLSPKQHHS ALECLLQRIA KNEAATNELM ENSBTAP00000021039/1-969 TGIPEKMKKD FRAMKDLTQQ INLSPKQHHS ALECLLQRIS KNETANNELT bmy_00945T0/1-541 TGIPEKMKKD FRAMKDLTQQ INLSPKQHHN ALKCLLQRIS KNETANSELT BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000012093/1-964 RWGLCLQKDV HKIEGRVLPM ERINLRNTSF ITSQELNWIK EVTRDLSILT ENSP00000349208/1-973 RWGLRLQKDV HKIEGRVLPM ERINLKNTSF ITSQELNWVK EVTRDPSILT ENSBTAP00000021039/1-969 RWGLYLQKDV HKIEGRVLPM ERINLRNISF ITSPELNWIK EVTRDLSILT bmy_00945T0/1-541 RWGLCLQKDV HKIEGRVLPM ERINLRNTSF ITSQELNWIK EVTRDLSILT BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000012093/1-964 VPMHFWALFY PKRAMDQARE LVKMLEKVAG PIGIRMSPPA WVELKDDRIE ENSP00000349208/1-973 IPMHFWALFY PKRAMDQARE LVNMLEKIAG PIGMRMSPPA WVELKDDRIE ENSBTAP00000021039/1-969 VPMHFWALFY PKRAMDQARE LVNMLEKIAG PIGMRMSPPA WVELKDDRIE bmy_00945T0/1-541 VPMHFWALFY PKRAMNQARE LVNMLEKVAG PIGIRMSPPA WVELKDDRIE BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000012093/1-964 TYVRTIQSML GAEGKIQMVV CIIMGTRDDL YRAIKKLCCV QTPVPSQVIN ENSP00000349208/1-973 TYVRTIQSTL GAEGKIQMVV CIIMGPRDDL YGAIKKLCCV QSPVPSQVVN ENSBTAP00000021039/1-969 TYVRTIQSML GVEGKIQMVV CIIMGTRDDL YGAIKKLCCV QTPVPSQVIN bmy_00945T0/1-541 TYVRTIQSML GVEGKIQMVV CIIMGTRDDL YRAIKKLCCV QTPVPSQVIN BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000012093/1-964 VRTIGQPTRL QSVAQKILLQ INCKLGGELW GVDIPLRQLM VIGVDVYHNP ENSP00000349208/1-973 VRTIGQPTRL RSVAQKILLQ INCKLGGELW GVDIPLKQLM VIGMDVYHDP ENSBTAP00000021039/1-969 VRTIGQPTRL RSVAQKILLQ INCKLGGELW GVDIPLKQLM VIGMDVYHDP bmy_00945T0/1-541 VRTIGQPTRL QSVAQKILLQ INCKLGGELW GVDIPLKQLM VIGVDVYHNP BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000012093/1-964 SRSMRSVVGF VASISLTLTK WYSRVVFQMP HQEMVDSLKL CLVGSLKKFY ENSP00000349208/1-973 SRGMRSVVGF VASINLTLTK WYSRVVFQMP HQEIVDSLKL CLVGSLKKFY ENSBTAP00000021039/1-969 SRGMRSVVGF VASINLTLTK WYSRVVFQMP HQEIVDSLKL CLVGSLKKFY bmy_00945T0/1-541 SRGMRSVVGF VSSINLTLTK WYSRVVFQMP HQEIVDSLKL CLVGSLKKFY BACU001986/1-91 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000012093/1-964 EXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000349208/1-973 EVNHCLPEKI VVYRDGVSDG QLKTVANYEI PQLQKCFEAF ENYQPKMVVF ENSBTAP00000021039/1-969 EVNHCLPDKI VVYRDGVSDG QLKTVASYEI PQLQKCFEAF ENYHPKMVVF bmy_00945T0/1-541 EVNHCLPEKI VVYRDGVSDG QLKTIASYEI PQLQKCFEAF ENYHPKMVVF BACU001986/1-91 ---------- ---------- ---------- ---------- ------MVVF 851 900 ENSTTRP00000012093/1-964 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXHVRQ-C ENSP00000349208/1-973 VVQKKISTNL YLAAPQNFVT PTPGTVVDHT ITSCEWVDFY LLAHHVRQGC ENSBTAP00000021039/1-969 VVQKKISTNL YLAATENFAT PSPGTVVDHT ITSCEWVDFY LLAHHVRQGC bmy_00945T0/1-541 VVQKKISTNV YRSSTEHFVT PSPGTVVDHT ITSCEW---- ---------- BACU001986/1-91 VVQKKISTNV YRSSTEHFVT PSPGTVVDHT ITSCEW---- ---------- 901 950 ENSTTRP00000012093/1-964 G-PTHYVCVL NTAH-SRDHM QRLTFKLCHM YWNWPGTIRV PAPCKYAHRL ENSP00000349208/1-973 GIPTHYVCVL NTANLSPDHM QRLTFKLCHM YWNWPGTIRV PAPCKYAHKL ENSBTAP00000021039/1-969 GIPTHYVCVL NTANLSPDHM QRLTFKLCHM YWNWPGTIRV PAPCKYAHKL bmy_00945T0/1-541 ---------- ---------- --LTFKLCHM YWNWPGTIRV PAPCKYAHKL BACU001986/1-91 ---------- ---------- --LTFKLCHM YWNWPGTIRV PAPCKYAHKL 951 1000 ENSTTRP00000012093/1-964 AFLSGQILHH EPAIQLCENL FFL ENSP00000349208/1-973 AFLSGHILHH EPAIQLCENL FFL ENSBTAP00000021039/1-969 AFLSGQILHH EPAIQLCENL FFL bmy_00945T0/1-541 AFLSGQILHH EPAIQLCENL FFL BACU001986/1-91 AFLSGQILHH EPAIQLCENL FFL