KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:19 2014 Check: 00 .. Name: BACU009926/1-1364 Len: 1375 Check: 3801 Weight: 1.00 Name: ENSTTRP00000000635/1-687 Len: 1375 Check: 7127 Weight: 1.00 Name: ENSP00000316845/1-690 Len: 1375 Check: 7945 Weight: 1.00 Name: bmy_17191T0/1-357 Len: 1375 Check: 6739 Weight: 1.00 Name: ENSBTAP00000021041/1-688 Len: 1375 Check: 8902 Weight: 1.00 // 1 50 BACU009926/1-1364 -MWPEESMAG AGLRPRPLMA RRGFGSGGVQ TPEPSVHLPG EGEIEDKELP ENSTTRP00000000635/1-687 MPWEEQ---- PGKKPSCSRS LKAFHTEPAQ GP-------- ---------- ENSP00000316845/1-690 MPWEEP---- AGEKPSCSHS QKAFHMEPAQ KP-------- ---------- bmy_17191T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021041/1-688 MLWEEQ---- PGKKPSCFQD LKAFHTEPAP GP-------- ---------- 51 100 BACU009926/1-1364 PSPTEPEEQG WSRETDHDDF ETLSHQSESQ SDTKTDPFES ASDTESLPGD ENSTTRP00000000635/1-687 ---------- ---------- ---------- ---------- ---------- ENSP00000316845/1-690 ---------- ---------- ---------- ---------- ---------- bmy_17191T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021041/1-688 ---------- ---------- ---------- ---------- ---------- 101 150 BACU009926/1-1364 LLGVICLTPD GTSEDREARR GCRDTPASGT LQEQHSTGVP GLDPKEELEL ENSTTRP00000000635/1-687 ---------- ---------- ---------- ---------- ---------- ENSP00000316845/1-690 ---------- ---------- ---------- ---------- ---------- bmy_17191T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021041/1-688 ---------- ---------- ---------- ---------- ---------- 151 200 BACU009926/1-1364 YLDFKEEPYK SGVRAFAAVA GEVRAVHLRE DVAGPERESP LAGTADHTRG ENSTTRP00000000635/1-687 ---------- ---------- ---------- ---------- ---------- ENSP00000316845/1-690 ---------- ---------- ---------- ---------- ---------- bmy_17191T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021041/1-688 ---------- ---------- ---------- ---------- ---------- 201 250 BACU009926/1-1364 CAQGPTGSCG LPPAKAVTGQ DLRGSSGFSL QKSRSESYLG IPMVWPFLLW ENSTTRP00000000635/1-687 FSTAETGTWS LP---FISAE DVPRETPSQP RSTSQHSHIS LDDLW----- ENSP00000316845/1-690 CFTTDMVTWA LL---CISAE TVRGEAPSQP RGIPHRSPVS VDDLW----- bmy_17191T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021041/1-688 FSTAEVGTWI LP---FISAE DVPRETPSQP RRIPQHSCIS LDDLW----- 251 300 BACU009926/1-1364 CCEQGRSWPN IHNRDGETQL PLTAPPGART GKGSTPGPAL NTGLLCSQPG ENSTTRP00000000635/1-687 ---------- ---------- ---------- ---------- ---------- ENSP00000316845/1-690 ---------- ---------- ---------- ---------- ---------- bmy_17191T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021041/1-688 ---------- ---------- ---------- ---------- ---------- 301 350 BACU009926/1-1364 FDATCQLPLG TSCLLHAKLC HSAPEKTDDK GKAFPRHCCQ HTTTLNRAHS ENSTTRP00000000635/1-687 ---------- ---------- ---------- ---------L EKMQRRKLKK ENSP00000316845/1-690 ---------- ---------- ---------- ---------L EKTQRKKLQK bmy_17191T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021041/1-688 ---------- ---------- ---------- ---------L EKTQRRKLKK 351 400 BACU009926/1-1364 IAEFPLRYSE GPLRQNSVK- FGSHLKEATE AERAPRTQHP LY-PVPTQLS ENSTTRP00000000635/1-687 LAQFERKMH- --ACKDGIQC WRKMTITSPE SLNLPRRSHP FSQSAPTGLN ENSP00000316845/1-690 QAHVERRLHI GAVHKDGVKC WRKTIITSPE SLNLPRRSHP LSQSAPTGLN bmy_17191T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021041/1-688 QAQFERKTH- --AHKDGVQC WRKMIITSPK SLNLPGRSHP FSQSAPTGLN 401 450 BACU009926/1-1364 HLLPASQRKV PGLEDQYEPR ALSWKRASQD TPSESLWLEN QSGQDSRSCP ENSTTRP00000000635/1-687 HM-------- ---------- --GWPEPIPD IAL------- ---------- ENSP00000316845/1-690 HM-------- ---------- --GWPEHTPG TAM------- ---------- bmy_17191T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021041/1-688 HM-------- ---------- --GWPEPTPD IAL------- ---------- 451 500 BACU009926/1-1364 VSSCLTAELV SRNAEEVPVP AEGKLGHGPE SRTEEPLSAG LAPNAEDVSD ENSTTRP00000000635/1-687 ---------- ---------- --------PD GALDTALRAD EAGSEEDLYE ENSP00000316845/1-690 ---------- ---------- --------PD GALDTAVCAD EVGSEEDLYD bmy_17191T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021041/1-688 ---------- ---------- --------PD GALDTALRGD EAGSEEDLYE 501 550 BACU009926/1-1364 KQKHLQDISV EAGNQTSHYT SKYILSEKRK PPARAKFPHH PSNSRSQVCN ENSTTRP00000000635/1-687 ---------- DVHSSSHHYS ---------- ---------H PGGGGEQLAI ENSP00000316845/1-690 ---------- DLHSSSHHYS ---------- ---------H PGGGGEQLAI bmy_17191T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021041/1-688 ---------- DVHSSSHHYS ---------- ---------H TGGGGEQLAI 551 600 BACU009926/1-1364 KGWGVCSGVS NHSDAPEPTL KSSTTDTSKE AEDVVVADPN FTRSALWGVS ENSTTRP00000000635/1-687 NEX-XXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX-- ENSP00000316845/1-690 NEL-ISDGSV VCAEALWDHV TMDDQELGFK AGDVIEVMDA TNREWWWG-- bmy_17191T0/1-357 ---------- ---------- -MDDQELGFN AGDVIEVMDA TNREWWWG-- ENSBTAP00000021041/1-688 NEL-ISDGSV VCAEALWDHV TMDDQELGFK AGDVIEVMDA TNREWWWG-- 601 650 BACU009926/1-1364 GVAAVTVSHC PWGGEERDQG HEGGAAPSAE GLGLEPKADT SSKGTPVIVA ENSTTRP00000000635/1-687 ---------- ---------- ------XXXX XXXXXX---- ---------- ENSP00000316845/1-690 ---------- ---------- ------RVAD GEGWFP---- ---------- bmy_17191T0/1-357 ---------- ---------- ------RVAD GEGWFP---- ---------- ENSBTAP00000021041/1-688 ---------- ---------- ------RVAD GEGWFP---- ---------- 651 700 BACU009926/1-1364 LEQKGLQATR RKVGPLPETQ SCEFLEERPG SPCGAGATPR VVSRAGKPQT ENSTTRP00000000635/1-687 ---------- ---------- -XXXXXLR-- ---------- ---------- ENSP00000316845/1-690 ---------- ---------- -ASFVRLR-- ---------- ---------- bmy_17191T0/1-357 ---------- ---------- -ASFVR---- ---------- ---------- ENSBTAP00000021041/1-688 ---------- ---------- -ANFVRLR-- ---------- ---------- 701 750 BACU009926/1-1364 YGNECELPAA LGLRGDHEAL QQVAPAAELA IVLSPQLASE ETPPGREETS ENSTTRP00000000635/1-687 ---------- ---------- ---------- ---------- ---------- ENSP00000316845/1-690 ---------- ---------- ---------- ---------- ---------- bmy_17191T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021041/1-688 ---------- ---------- ---------- ---------- ---------- 751 800 BACU009926/1-1364 SQGRAAGGLL STGAPAEENP PGPSQSSGTP AAREEAAGAP GARGA---ED ENSTTRP00000000635/1-687 ---------V NQDEPADDAA LGTGHGGAGH -GGAEAQSSK DQMRTNVINE ENSP00000316845/1-690 ---------V NQDEPADDDA PLAGNSGAED -GGAEAQSSK DQMRTNVINE bmy_17191T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021041/1-688 ---------V NQDEPADDEA LGPGHQGTGD GGGTEAQGSR DQMRTNVINE 801 850 BACU009926/1-1364 TLGASREPGK RLAFPKVTSL RKGKPSAAQS PGGGRPGGSN GLEELCTDSR ENSTTRP00000000635/1-687 ILSTERDYIK HLRDICEGYL RQCRKRVDMF SEEQLRTIFG NIEDIY---- ENSP00000316845/1-690 ILSTERDYIK HLRDICEGYV RQCRKRADMF SEEQLRTIFG NIEDIY---- bmy_17191T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021041/1-688 ILSTERDYIK HLRDICEGYL RQCRKRADMF SEEQLRIIFG NIEDIY---- 851 900 BACU009926/1-1364 PPAASGQSAS GPVRTPRGAH ASASPEIGFQ GAGRGLAGPT HGGHVETRGD ENSTTRP00000000635/1-687 ------RCQK AFVKALEQKF NRERPHLSEL GA-------- --CFLEHQAD ENSP00000316845/1-690 ------RCQK AFVKALEQRF NRERPHLSEL GA-------- --CFLEHQAD bmy_17191T0/1-357 ---------- ---------- ---------- ---------- -------QAD ENSBTAP00000021041/1-688 ------RCQK AFVKALEQKF NRERPHLSEL GA-------- --CFLEHQAD 901 950 BACU009926/1-1364 LGSRRQSSES CDAKRLKTPE KRLSARLASA QKTFANFFES -RVLEKENTG ENSTTRP00000000635/1-687 F---QIYSEY CNNH----PN ACVELSRLAK LSKYVYFFEA CRLLQK---- ENSP00000316845/1-690 F---QIYSEY CNNH----PN ACVELSRLTK LSKYVYFFEA CRLLQK---- bmy_17191T0/1-357 F---QIYSEY CNNH----PN ACVELSRLAK LSKYVYFFEA CRLLQK---- ENSBTAP00000021041/1-688 F---QIYSEY CNNH----PN ACMELSRLTK LSKYVYFFEA CRLLQK---- 951 1000 BACU009926/1-1364 ECCPGSFKDQ KKNSRLHQTS WRTVLKSKDA EGPKRPSLVS LVTGPEIWNL ENSTTRP00000000635/1-687 ---------- -----MIDIS LDGFLLTPVQ KICKYPLQLA -----ELLKY ENSP00000316845/1-690 ---------- -----MIDIS LDGFLLTPVQ KICKYPLQLA -----ELLKY bmy_17191T0/1-357 ---------- -----MIDIS LDGFLLTPVQ KICKYPLQLA -----ELLK- ENSBTAP00000021041/1-688 ---------- -----MIDIS LDGFLLTPVQ KICKYPLQLA -----ELLKY 1001 1050 BACU009926/1-1364 PRPSPLGTSS HCVEQAEDKE SYVFRDHWTL PHSPTPLSSS HVVSSDNRRK ENSTTRP00000000635/1-687 THPQ------ ---------- ---HRDFKDV EAALHAMKNV AQLINERKRR ENSP00000316845/1-690 THPQ------ ---------- ---HRDFKDV EAALHAMKNV AQLINERKRR bmy_17191T0/1-357 ---------- ---------- -----DFKDV EAALHAMKNV AQLINERKRR ENSBTAP00000021041/1-688 THPQ------ ---------- ---HRDFKDV EAALHAMKNV AQLINERKRR 1051 1100 BACU009926/1-1364 SEPTIKCTGT QEGGKYLPSG NFPEKSWPLS PTRPGRQQAG ISHTLPSSST ENSTTRP00000000635/1-687 LENIDKIAQW QSSIEDWEGE DLLVRSSEL- -IHSGELTRV TQPQAKSQQR ENSP00000316845/1-690 LENIDKIAQW QSSIEDWEGE DLLVRSSEL- -IYSGELTRV TQPQAKSQQR bmy_17191T0/1-357 LENIDKIAQW QSSIEDWEGE DLLVRSSEL- -IHSGELTRV TQPQAKSQQR ENSBTAP00000021041/1-688 LENIDKIAQW QSSIEDWEGE DLLVRSSEL- -IHSGELTRV TQPQAKSQQR 1101 1150 BACU009926/1-1364 CCLLYGSQGV PCKPLSPKPQ SPRPGAQRVD FHYPGRGRAI SVVSLGSSSH ENSTTRP00000000635/1-687 MFFLFDHQLI YCK------- --KDLLRRDV LYYKGR---- ---------- ENSP00000316845/1-690 MFFLFDHQLI YCK------- --KDLLRRDV LYYKGR---- ---------- bmy_17191T0/1-357 MFVLFDHQLI YCK------- --KDLLRRDV LYYKGR---- ---------- ENSBTAP00000021041/1-688 MFFLFDHQLI YCK------- --KDLLRRDV LYYKGR---- ---------- 1151 1200 BACU009926/1-1364 VDSSSEAPES PKTSKAWTSL LLSLQALDQG EQKKESQKRG QHPCGLSTAP ENSTTRP00000000635/1-687 LDLDG----- ---------- -LELVDLEDG -------KDG ELHVSVRNAF ENSP00000316845/1-690 LDMDG----- ---------- -LEVVDLEDG -------KDR DLHVSIKNAF bmy_17191T0/1-357 LDMDG----- ---------- -LEVVDLEDG -------KDR ELHVSVRNAF ENSBTAP00000021041/1-688 VDMDS----- ---------- -LQVVDLEDG -------KDR ELHVSVRNAF 1201 1250 BACU009926/1-1364 SLKDLLGSEN HMPWEEQPGK KPSCSRGLKA FHTEPAQGPF STAETGTWTL ENSTTRP00000000635/1-687 RLRCGPSGES QLLCAKKPEQ K---QRWLKA FARERDQVRL DQ-ETG---- ENSP00000316845/1-690 RLHRGATGDS HLLCTRKPEQ K---QRWLKA FAREREQVQL DQ-ETG---- bmy_17191T0/1-357 RLRCGPSGES HLLCAKKPEQ K---QRWLKA FAREREQVRL DQ-ETG---- ENSBTAP00000021041/1-688 RLCCGPSGES HLLCAKKPEQ K---QRWLKA FAREREQVRL DQ-ETG---- 1251 1300 BACU009926/1-1364 PFVSTEDVPR ETPSQPRSIS QHSHISLDDL WLEKMQRRKL KKLAQFERKM ENSTTRP00000000635/1-687 ---------- ---------- ---------F SITQLKKEAV MLIAS----- ENSP00000316845/1-690 ---------- ---------- ---------F SITELQRKQA MLNAS----- bmy_17191T0/1-357 ---------- ---------- ---------F SITQLQRKQA MLNAS----- ENSBTAP00000021041/1-688 ---------- ---------- ---------F SITQLQRKQA MLNAS----- 1301 1350 BACU009926/1-1364 HACKDGVQCW RKMTITSPES LNLP----RR SHPFSQSAPT GLNRMGWPEA ENSTTRP00000000635/1-687 ---------- QHQAAGKPKA LSRPYYLTRQ KHP---ALPT SLPQQQVLVL ENSP00000316845/1-690 ---------- KQQVTGKPKA VGRPCYLTRQ KHP---ALPS NRPQQQVLVL bmy_17191T0/1-357 ---------- KQQAVGKPKA LSRPYYLTRQ KHP---ALPT SLPQQQVLVL ENSBTAP00000021041/1-688 ---------- KQQAMGKPKA LGRPYYLARQ KHP---ALPT SLPQQQVLVL 1351 1400 BACU009926/1-1364 IPDIGELHAS FFSFTLRCPG KKDKT ENSTTRP00000000635/1-687 AEPKRKPSTF WHSISRLAPF RK--- ENSP00000316845/1-690 AEPRRKPSTF WHSISRLAPF RK--- bmy_17191T0/1-357 AEPKRKPSTF WHSISRLAPF RK--- ENSBTAP00000021041/1-688 AEPKRKPSTF WHSISRLAPF RK---