KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:19 2014 Check: 00 .. Name: ENSP00000328598/1-328 Len: 328 Check: 2781 Weight: 1.00 Name: ENSBTAP00000021043/1-322 Len: 328 Check: 4412 Weight: 1.00 Name: ENSTTRP00000002362/1-326 Len: 328 Check: 3679 Weight: 1.00 Name: bmy_07330T0/1-326 Len: 328 Check: 9476 Weight: 1.00 Name: BACU014083/1-121 Len: 328 Check: 6715 Weight: 1.00 // 1 50 ENSP00000328598/1-328 MSSYLEYVSC SSSGGVGGDV LSLAPKFCRS DARPVALQPA FPLGNGDGAF ENSBTAP00000021043/1-322 MSSYLDYVSC GRD---GGDL LSFASKFCRA DARPVVLQPA FPLGSGDGAF ENSTTRP00000002362/1-326 MSSYLDYVSC GSGG--GSDV LSFAPKXXXX XXXXXXXXXX XXXXXXXXXX bmy_07330T0/1-326 MSSYLDYVSC GSGRG-GGDV LSFAPKFCRA DARPVVLQPA FPIGRGDGAF BACU014083/1-121 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000328598/1-328 VSCLPLAAAR PSPSPPAAPA RPSVPPPAAP QYAQCTLEGA YEPGAAPAAA ENSBTAP00000021043/1-322 VSCLPLAAAR AVPSPPAAPA QP--PGPAAP AYAPCPLEGA YEPGAAP-VQ ENSTTRP00000002362/1-326 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_07330T0/1-326 VSCLPLAAAR AAPSPPAAPE QPPAPPPAAP AYAPCPLEGT YEPGTAP-AA BACU014083/1-121 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000328598/1-328 AGGADYGFLG SGPAYDFPGV LGRAADDGGS HVHYATSAVF SGGGSFLLSG ENSBTAP00000021043/1-322 AGGEDYGLPG SAPAYDLPCA LGRPADDSGA HVHYATSAVF SGGGSFLLSG ENSTTRP00000002362/1-326 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_07330T0/1-326 AGGADYGLPG TGPPYDFPCA LGRPADDGGA HVHYATSAVF SGGGSFLLSS BACU014083/1-121 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000328598/1-328 QVDYAAFGEP GPFPACLKAS ADGHPGAFQT ASPAPGTYPK SVSPASGLPA ENSBTAP00000021043/1-322 QVDYAAFGEP GPFSACLKEP TDGHSGAFQT ASPAPGVYPK CASPASGLPA ENSTTRP00000002362/1-326 XXXXXXXXXX XXXXXXXXXX XXXXXXXSKT ASAAPGVYPK FCVPASGLPA bmy_07330T0/1-326 QVDYAAFGEP APFPACLKEP ADGHSGAFQT ASPAPGLYPK SASPSSGLPA BACU014083/1-121 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000328598/1-328 AFSTFEWMKV KRNASKKGKL AEYGAASPSS AIRTNFSTKQ LTELEKEFHF ENSBTAP00000021043/1-322 AFSTFEWMKV KRNAPKKSKF AEYGAATPSS AIRTNFSTKQ LTELEKEFHF ENSTTRP00000002362/1-326 AFSTFEWMKV KRNAPKKSKF AKYGAANSSS AIRTNFSTKQ LTELEKEFHF bmy_07330T0/1-326 AFSTFEWMKV KRNAPKKSKF AKYGAANSSS AIRTNFSTKQ LTELEKEFHF BACU014083/1-121 -------MKV KRNAPKKSKF AKYGAANSSS AIRTNFSTKQ LTELEKEFHF 251 300 ENSP00000328598/1-328 NKYLTRARRI EIANCLHLND TQVKIWFQNR RMKQKKRERE GLLATAIPVA ENSBTAP00000021043/1-322 NKYLTRARRI EIANSLQLND TQVKIWFQNR RMKQKKRERE GLLPSATPVA ENSTTRP00000002362/1-326 NKYLTRARRI EIANSLQLND TQVKIWFQNR RMKQKKRERE GLLPLATTVT bmy_07330T0/1-326 NKYLTRARRI EIANSLQLND TQVKIWFQNR RMKQKKRERE GLLPLATTLT BACU014083/1-121 NKYLTRARRI EIANSLQLND TQVKIWFQNR RMKQKKRERE GLLPLATTLT 301 350 ENSP00000328598/1-328 PLQLPLSGTT PTKFIKNPGS PSQSQEPS ENSBTAP00000021043/1-322 SFQLPISGTS PAKSGKNPGS PSQAQEPS ENSTTRP00000002362/1-326 SLQLPLSGTS PTKSGKNLGS PSQAQEPS bmy_07330T0/1-326 SLQLPLSGTS PTKSGKNLGS PSQAQEPS BACU014083/1-121 SLQLPLSGTS PTNSGKNLGS PSQAQEPS