KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:13:21 2014 Check: 00 .. Name: BACU014584/1-687 Len: 748 Check: 4810 Weight: 1.00 Name: bmy_05223T0/1-433 Len: 748 Check: 6655 Weight: 1.00 Name: ENSP00000385247/1-684 Len: 748 Check: 5541 Weight: 1.00 Name: ENSBTAP00000021091/1-685 Len: 748 Check: 5869 Weight: 1.00 // 1 50 BACU014584/1-687 ---------- ---MPPGFYA SQAGRPRAT- -----ETARR SCLYTGPL-- bmy_05223T0/1-433 ---------- ---------- ---------- -----MCRPV QYIHADTV-- ENSP00000385247/1-684 MSLWPPFRCR WKLAPRYSRR ASPQQPQQDF EALLAECLRN GCLFEDTSFP ENSBTAP00000021091/1-685 MAMCFPICRY WKLGCKDSMG DFSQLPRQDY EALKERCLRD GCLFEDKSFP 51 100 BACU014584/1-687 -------KGR TTRFLPAR-R LVHLRRVTSG SGFHMGQVNV RKPVEIYVAT bmy_05223T0/1-433 ---------- VCARMSSRFM WI-------- ---------- -----LCAI- ENSP00000385247/1-684 ATLSSIGSGS LLQKLPPRLQ WKRPPELHSN PQFYFAKA-- -KRLDLCQGI ENSBTAP00000021091/1-685 AALSSIGSGP LLRKLPSRLQ WRRPPELHSN PLFYSAKA-- -KRLDLCQGL 101 150 BACU014584/1-687 QGDCWFLAAL QALTLHQDIL SRVIPLNQSF TEKYAGIFRF WFWHFGKCVP bmy_05223T0/1-433 ----WLRRLL VLGGFASSDF APGHPESCHS PES------- -FWHFGKWVP ENSP00000385247/1-684 VGDCWFLAAL QALALHQDIL SRVVPLNQSF TEKYAGIFRF WFWHYGNWVP ENSBTAP00000021091/1-685 VGDCWFLAAL QALSLHQDIL SRVVPLNQSF TKKYAGIFQF WFWHFGKWVP 151 200 BACU014584/1-687 VVVDDRLPVK EAGQLVFVSS PYKNLFWGAL LEKAYAKLSG SYGDLQREQV bmy_05223T0/1-433 VVVDDRLPVN EAGQLVFVSS TYKNLFWGTL LEKTYAKLSG SYEDLQREQV ENSP00000385247/1-684 VVIDDRLPVN EAGQLVFVSS TYKNLFWGAL LEKAYAKLSG SYEDLQSGQV ENSBTAP00000021091/1-685 IVVDDRLPVN EAGQLVFVSS TYKNLFWGAL LEKAYAKLSG SYEDLQRGQV 201 250 BACU014584/1-687 SEALVDFTAG VTMAINLAEA PSNLWDILTR ATCSRTRIGC QTHSGVLKSF bmy_05223T0/1-433 SEALVDFTGG VTMTINLAEA PGNLWDILTR TTYGRTLIGC QTHSRKERAL ENSP00000385247/1-684 SEALVDFTGG VTMTINLAEA HGNLWDILIE ATYNRTLIGC QTHSG-EKIL ENSBTAP00000021091/1-685 SEALVDFTGG VTMTIKLSEA PDSLWDVLTR AMYSRTLIGC QTHCG-ERVL 251 300 BACU014584/1-687 ENSKETQHGS LPPPP----- -HKP-WLQLI NPPNSQVSCT QQSADRSS-- bmy_05223T0/1-433 RNGLVQGHAC TLTGIRKVTS KHGPAYLIKL RNPWGRVEWK GDWSDR---- ENSP00000385247/1-684 ENGLVEGHAY TLTGIRKVTC KHRPEYLVKL RNPWGKVEWK GDWSDSSSKW ENSBTAP00000021091/1-685 ENGLVDGHAY TLTGLRKVTT RHGPEYLVRL RNPWGKIEWK GDWSDSSSMW 301 350 BACU014584/1-687 ---------- ---------- -LSLQKERVL KNGLVQGHAC TL-PG-IREV bmy_05223T0/1-433 ---------- ---------- -VALQD---F KAHFMLLVIC KLSPGLLSQE ENSP00000385247/1-684 ELLSPKEKIL LLRKDNDGEF WMTLQD---F KTHFVLLVIC KLTPGLLSQE ENSBTAP00000021091/1-685 DLLSPKEKIL LLRKDDDGEF WMSLQD---F KAHFMLLVIC KLSPGLLTQE 351 400 BACU014584/1-687 SSAVMNLTQI SAIFAIGTQP SHLDWFSFYT DTFWKNPQFL LSVWRPQEGR bmy_05223T0/1-433 VGQKWSYTML EGRWEKGTTA GGP--TKSPQ GEP-KNPQFL LSVWRPQEGR ENSP00000385247/1-684 AAQKWTYTMR EGRWEKRSTA GGQ--RQLLQ DTFWKNPQFL LSVWRPEEGR ENSBTAP00000021091/1-685 VGQKWSYTML EGRWENGRTA GGQ--MKSPQ DTFWKNPQFL LSVWRPQEGK 401 450 BACU014584/1-687 RFQMPCSVLV SLLQKPRHRQ CNKKSHLAIS FYLFRMSKSY DDQRRLRPKF bmy_05223T0/1-433 RFQMPCSVLV SLLQKPRHRH RNKKPHLAIG FYLFR---SY DDQRRLPPKF ENSP00000385247/1-684 RSLRPCSVLV SLLQKPRHRC RKRKPLLAIG FYLYRMNKYH DDQRRLPPEF ENSBTAP00000021091/1-685 RSQLLCSVLV SLLQKPRHRH RNWKPHLAIG FYLFRVNQIF DAQKKLPSEF 451 500 BACU014584/1-687 FWKNAPLNWS ETFLREKEVS RELWLEPGTY IIVPCTTESH PESEFVLRVF bmy_05223T0/1-433 FCKNAPLNWP ETFLREKEVS RELWLEPGTY VIVPCTSESR QGSEFVLRVF ENSP00000385247/1-684 FQRNTPLSQP DRFLKEKEVS QELCLEPGTY LIVPCILEAH QKSEFVLRVF ENSBTAP00000021091/1-685 FWKNASLSCR ATFLTEKEVS RELWLEPGTY VIVPCTSEAC QESEFVLRVF 501 550 BACU014584/1-687 CREHVFYEIG RNSSVVFSKE TVDQSEGQDE FFPKLFDKEN GITYSAQKWH bmy_05223T0/1-433 SRKH------ ---------E TVDQSEGQEE FFTKLFEK-- ---------- ENSP00000385247/1-684 SRKHIFYEIG SNSGVVFSKE IEDQNERQDE FFTKFFEK-- ---------- ENSBTAP00000021091/1-685 SRKHIFYEIG SNSRVIFSKE IVDQSEGKDE FFTKLFEK-- ---------- 551 600 BACU014584/1-687 MCHPEQMWER PFPARFSCGP SASNEPSAMM IFFYHSASAL ASRSKCSPTA bmy_05223T0/1-433 --HPE----- ---------- --INAVQLQK ILNHMPWSG- ---------- ENSP00000385247/1-684 --HPE----- ---------- --INAVQLQN LLNQMTWSSL GSRQPF---- ENSBTAP00000021091/1-685 --YPE----- ---------- --INAIQLQN ILNHMPWSGL GSKQPL---- 601 650 BACU014584/1-687 EDPEPHALVR QPGLLVELTL SSPAALTLGC EGLSGGAWKR LASLAFGVGS bmy_05223T0/1-433 ---------- ---------- ---------- ---------- ---------- ENSP00000385247/1-684 -----FSLEA CQGILALLDL NASGTMSI-- --------QE FRDLWKQLKL ENSBTAP00000021091/1-685 -----FSLEA CQGILALLDL NASGTVSI-- --------QE FRDLWKQLMF 651 700 BACU014584/1-687 LQEIFHKQDT NRSGCLNWAQ LRAAMRDTGI VLSDDVCRLM LICYGGPDIQ bmy_05223T0/1-433 ---------- ---------- ---------- ---------- ----GFPQAR ENSP00000385247/1-684 SQKVFHKQDR G-SGYLNWEQ LHAAMREAGI MLSDDVCQLM LIRYGGPRLQ ENSBTAP00000021091/1-685 YQEVFHKQDT NRSGSLNWAQ LRAAMREAGI MLSDDVCQLM LIRYGGPDLQ 701 750 BACU014584/1-687 MDIVGFVRLM LRVENMEDAF QNSTQNGKGI YLQKPEVRPS PRGRFTSS bmy_05223T0/1-433 H--------- ---------- ---------- ---------- -------- ENSP00000385247/1-684 MDFVSFIHLM LRVENMEDVF QNLTQDGKGI YLQKPEWMMM ALYS---- ENSBTAP00000021091/1-685 MNFVRFVRLM LRVENMEDVF QNLTQDGKGI YLQKPEWLMM ALYC----