KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:23 2014 Check: 00 .. Name: ENSTTRP00000005131/1-795 Len: 805 Check: 7733 Weight: 1.00 Name: ENSP00000342307/1-801 Len: 805 Check: 4244 Weight: 1.00 Name: ENSBTAP00000021101/1-757 Len: 805 Check: 1869 Weight: 1.00 Name: bmy_06794T0/1-414 Len: 805 Check: 4480 Weight: 1.00 Name: BACU003115/1-746 Len: 805 Check: 4251 Weight: 1.00 // 1 50 ENSTTRP00000005131/1-795 MKTSPRRPLI LKRRKLPLPV QNAPGDTSEE EPKRPPAQQE PAQPQASKEV ENSP00000342307/1-801 MKTSPRRPLI LKRRRLPLPV QNAPSETSEE EPKRSPAQQE SNQAEASKEV ENSBTAP00000021101/1-757 MKTSPRRPLI LKRRRLPLPV HNAPGDTAEE EPKGPPAQQE PAQAQAPKEV bmy_06794T0/1-414 MKTSPRRPLI LKRRRLPLPV QNAPGDTSEE EPKRPPAQQE PAQPQASKEV BACU003115/1-746 MKTSPRRPLI LKRRRLPLPV QNAPGDTSEE EPKRPPAQQE PAQPQASKEV 51 100 ENSTTRP00000005131/1-795 AESNPCKFPA GIKMINHPTM PNTQVVAVPK NANVQSIITA LTAKGKESGS ENSP00000342307/1-801 AESNSCKFPA GIKIINHPTM PNTQVVAIPN NANIHSIITA LTAKGKESGS ENSBTAP00000021101/1-757 AEPNPCKFPA GIKILNHPTM PNTQVVVVPN NANIQSIITA LTAKGKESGS bmy_06794T0/1-414 AESNPCKFPA GIKIVNHPTM PNTQVVAVPK NANIQSIITA LTAKGKESGS BACU003115/1-746 AESNPCKFPA GIKIVNHPTM PNTQVVAVPK NANIQSIITA LTAKGKESGS 101 150 ENSTTRP00000005131/1-795 SGPNKFILIS CGGAPTRPPG PQPQGQASND PKRTEVITEA LGPKSASKDV ENSP00000342307/1-801 SGPNKFILIS CGGAPTQPPG LRPQTQTSYD AKRTEVTLET LGPKPAARDV ENSBTAP00000021101/1-757 SGPNKFILIS CGGAPTPPPG PQHQAQTSKD PKRTEVITET LGPKSATGDE bmy_06794T0/1-414 SGPNKFILIS CGGAPTRPPV PQPQAQTSSD PKRTEVITET LGPKSAAKDV BACU003115/1-746 SGPNKFILIS CGGAPARPPG PQPQAQTSSD PKRTEVITET LGPKSAAKDV 151 200 ENSTTRP00000005131/1-795 NLPRPAGALP GQRWENCAGG EAAGCTLDNS LTNIQWLGKM TSDGLGSCSI ENSP00000342307/1-801 NLPRPPGALC EQKRETCADG EAAGCTINNS LSNIQWLRKM SSDGLGSRSI ENSBTAP00000021101/1-757 NLPRPAGALP GQKWKNCAGG EAASCPLDNS LTNIQWLGKM TSDGLGSCSI bmy_06794T0/1-414 NLPRPPGALP GQRWENCAGG EAAGCTLDNS LTNIQWLGKM TSDGLGSCSI BACU003115/1-746 NLPRPPGALP GQRWENCAGG EAAGCTLDNS LTNIQWLGKM TSDGLGSCSI 201 250 ENSTTRP00000005131/1-795 KQEAEEKENR HLERSQAK-- -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000342307/1-801 KQEMEEKENC HLEQRQVK-- -VEEPSRPSA SWQNSVSERP PYSYMAMIQF ENSBTAP00000021101/1-757 KQEVEEKENR HLEQSQAK-- -VERPPGASA PWPDSVSERP PYSYMAMIQF bmy_06794T0/1-414 KQEVEEKENR HLEQSQAK-- -VEGPPGASA SWPDSVSERP PYSYMAMIQF BACU003115/1-746 KQEVEEKENR HLEQSQAKNA QVEGPPGASA SWPDSVSERP PYSYMAMIQF 251 300 ENSTTRP00000005131/1-795 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXNSIRH NLSLHDMFVR ENSP00000342307/1-801 AINSTERKRM TLKDIYTWIE DHFPYFKHIA KPGWKNSIRH NLSLHDMFVR ENSBTAP00000021101/1-757 AINSTERKRM TLKDIYSWIE DHFPYFKHIA KPGWKNSIRH NLSLHDMFVR bmy_06794T0/1-414 AINSTERKRM TLKDIYTWIE DHFPYFKHIA KPGWKNSIRH NLSLHDMFVR BACU003115/1-746 AINSTERKRM TLKDIYTWIE DHFPYFKHIA KPGWKNSIRH NLSLHDMFVR 301 350 ENSTTRP00000005131/1-795 ETSANGKVSF WTIHPSANRY LTLDQVFKPL DPGSPQSPEH LESQQKRPNP ENSP00000342307/1-801 ETSANGKVSF WTIHPSANRY LTLDQVFKPL DPGSPQLPEH LESQQKRPNP ENSBTAP00000021101/1-757 ETSANGKVSF WTIHPSANRY LTLDQVFKPL DPGSAHSPEH SESQQKRPNP bmy_06794T0/1-414 ETSANGKVSF WTIHPSANRY LTLDQVFK-- ---------- ---QQKRPNP BACU003115/1-746 ETSANGKVSF WTIHPSANRY LTLDQVFK-- ---------- ---QQKRPNP 351 400 ENSTTRP00000005131/1-795 ELRRNVAIKT ELPLGARRKM KPLLPRVSSY LVPIQFPVNQ SLVLQPSVKV ENSP00000342307/1-801 ELRRNMTIKT ELPLGARRKM KPLLPRVSSY LVPIQFPVNQ SLVLQPSVKV ENSBTAP00000021101/1-757 DLRRNVAIKT ELPLGARRKM KPLLPRVSSY LVPIQFPANP SLVLQPSVKV bmy_06794T0/1-414 EVRRNVAVKT ELPLGARRKM KPLLPRVSSY LVPIQFPVNQ SLVLQPSVKV BACU003115/1-746 ELRRNVAIKT ELPLGARRKM KPLLPRVSSY LVPIQFPVNQ SLVLQPSVKV 401 450 ENSTTRP00000005131/1-795 PLPLAASLMS SELARHSKRV RIAPKXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000342307/1-801 PLPLAASLMS SELARHSKRV RIAPKVFGEQ VVFGYMSKFF SGDLRDFGTP ENSBTAP00000021101/1-757 PLPLAASL-- SELARHSKRV RIAPKV---- ---------- ---------- bmy_06794T0/1-414 PLPLAASLMS SELARHSKRV RIAPKV---- ---------- ---------- BACU003115/1-746 PLPLAASLMS SELARHSKRV RIAPKV---- ---------- ---------- 451 500 ENSTTRP00000005131/1-795 XXXXXXXXXX XXXVLLADEG VAPLPTAGPV KEEKLLLGEG LSPLLPVQSI ENSP00000342307/1-801 ITSLFNFIFL CLSVLLAEEG IAPLSSAGPG KEEKLLFGEG FSPLLPVQTI ENSBTAP00000021101/1-757 ---------- ----LLADEG VASLPTAGPV TEEKLLLAEG LSPLLPVPSI bmy_06794T0/1-414 ---------- ---------- ---------- ---------- ---------- BACU003115/1-746 ---------- ----LLADEG VAPLPTAGPV KAEKLLLGEG LSPLLPAQSI 501 550 ENSTTRP00000005131/1-795 KEEEVQPGEE TPHLGRPIKV ESPPLEEWPS PCPSVKEESS PSWEDSSHSP ENSP00000342307/1-801 KEEEIQPGEE MPHLARPIKV ESPPLEEWPS PAPSFKEESS HSWEDSSQSP ENSBTAP00000021101/1-757 KEEDVHPGEE TPHLGRPIKV ESPPLEAWPS PCPSVKEESS HSWEDSSCSP bmy_06794T0/1-414 ---------- ---------- ---------- ---------- ---------- BACU003115/1-746 KEEEVQPGEE TPHLGRPIKV ESPPLEEWPS PCPSVKEESS PAWEDSSRSP 551 600 ENSTTRP00000005131/1-795 IPRPKKSYS- GPKSPARCVS DLLVIKRRER REMSRSRRKQ HLLPPCLDEP ENSP00000342307/1-801 TPRPKKSYS- GLRSPTRCVS EMLVIQHRER RERSRSRRKQ HLLPPCVDEP ENSBTAP00000021101/1-757 TPRPKKSSST GSRSPTRRVS DLLVIKRREG REMSRSRRKQ HLVPPRLEEP bmy_06794T0/1-414 ---------- ---------- ---------- ---------- ---------- BACU003115/1-746 IPRPKKSYS- GPRSPARCVS DLLVIKRRER REMSRSRRKQ HLLPPCLDEP 601 650 ENSTTRP00000005131/1-795 ELLFSEGPGT SR-----GAT AGSSQPASQL GSSQEEGGPF KTPIKEMLPI ENSP00000342307/1-801 ELLFSEGPST SRWAAELPFP ADSSDPASQL SYSQEVGGPF KTPIKETLPI ENSBTAP00000021101/1-757 ELLLSEGPGA PQ-----PAL AGPPQPTCQP GSPPEDGGPF KTPIKEMLPT bmy_06794T0/1-414 ---------- ---------- ---------- ---------- ---------- BACU003115/1-746 ELLFSEGPGA SQ-----QAT AGSSRPASQL GSSQVEGGPF KTPIKEMLPI 651 700 ENSTTRP00000005131/1-795 SSTPSKSALP VTPESWRLTP PAKVGGLDFS PVRTPQGAFG PLPDSLELAD ENSP00000342307/1-801 SSTPSKSVLP RTPESWRLTP PAKVGGLDFS PVQTSQGASD PLPDPLGLMD ENSBTAP00000021101/1-757 SSTPSKSALP TTPESWRLTP PAKVGGLDFS PVRTPQGAFG PLPGSLELAD bmy_06794T0/1-414 ---------- ---------- ---------- ------SASG SL-------- BACU003115/1-746 SSTPSKSALP VTPEPWRLTP PAKVGGLDFS PVRTPQGAFG PLPDSLELAD 701 750 ENSTTRP00000005131/1-795 LSATPL-SVP LFDSPRELLN SEPFDITADP FSGCPSSDME VPKPGSSEPQ ENSP00000342307/1-801 LSTTPLQSAP PLESPQRLLS SEPLDLISVP FGNSSPSDID VPKPGSPEPQ ENSBTAP00000021101/1-757 LSATPLKSVP LFDSPRELLN SEPFDLATDP FGSCLPSDME VPKPGSPEPQ bmy_06794T0/1-414 ---------- ---------- ---------- ---------- ---------- BACU003115/1-746 LSTTPLKSIP LFDSPRELLN SEPFDITADP FSGCPPSDTE VPRPGSSEPQ 751 800 ENSTTRP00000005131/1-795 VAGLSANRSL TEGLVLDTMN DSLSKILLDI SFPGLEEDLL GSDDVGWAQF ENSP00000342307/1-801 VSGLAANRSL TEGLVLDTMN DSLSKILLDI SFPGLDEDPL GPDNINWSQF ENSBTAP00000021101/1-757 VAGLSANRSL TEGLILDTMN DSLSKILLDI SFPGLEEDLL GPGSVGWTQC bmy_06794T0/1-414 ---------- ---------- ---------- ---------- ---------- BACU003115/1-746 VAGLSASRSL TEGLVLDTMN DSLSKILLDI SFPGLEEDLL GSDDTSWAQF 801 850 ENSTTRP00000005131/1-795 IPELR ENSP00000342307/1-801 IPELQ ENSBTAP00000021101/1-757 IPDLR bmy_06794T0/1-414 ----- BACU003115/1-746 IPELR