KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:24 2014 Check: 00 .. Name: ENSP00000419740/1-384 Len: 502 Check: 9528 Weight: 1.00 Name: bmy_07212T0/1-236 Len: 502 Check: 5385 Weight: 1.00 Name: ENSBTAP00000021120/1-384 Len: 502 Check: 2885 Weight: 1.00 Name: BACU000311/1-478 Len: 502 Check: 3055 Weight: 1.00 Name: ENSTTRP00000008868/1-384 Len: 502 Check: 535 Weight: 1.00 // 1 50 ENSP00000419740/1-384 ---------- ---------- ---------- ---------- ---------- bmy_07212T0/1-236 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021120/1-384 ---------- ---------- ---------- ---------- ---------- BACU000311/1-478 MLAGSGDPNE EEEEEEELVD PLTTVREQCE QLEKCVKARE QLELCDERVS ENSTTRP00000008868/1-384 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000419740/1-384 ---------- ---------- ---------- ---------- ----MAALTL bmy_07212T0/1-236 ---------- ---------- ---------- ---------- ----MAALVG ENSBTAP00000021120/1-384 ---------- ---------- ---------- ---------- ----MAALVV BACU000311/1-478 SRSQTEDCTE ELFDFLHARD HCVAHKLFNS LNGSGRNYPA AHADMAALVG ENSTTRP00000008868/1-384 ---------- ---------- ---------- ---------- ----MAALVG 101 150 ENSP00000419740/1-384 RGVRELLKRV DLATVPRRHR Y--------- ---------- -----KKKWA bmy_07212T0/1-236 RGVRDMLKRA DFMTVPRRQR QMEVGAEARV LTVAKVVARA RVPTVAEVKA ENSBTAP00000021120/1-384 RGVRDMLKRA DFATVPRRQR H--------- ---------- -----KKKWA BACU000311/1-478 KGVRDMLKRA DFMTVPRRQR H--------- ---------- -----KKKWA ENSTTRP00000008868/1-384 RGVRDMLKRA DFMTVPXXXX X--------- ---------- -----XXXXA 151 200 ENSP00000419740/1-384 ATEPKFPAVR LALQNFDMTY SVQFGDLWPS IRVSLLSEQK YGALVNNFAA bmy_07212T0/1-236 ATEPKFPATR LALQNFDMTY SVQFGDLWPS IRVSLLSEQK YGALVNNFAA ENSBTAP00000021120/1-384 STEPKFPATR LALQNFDMTY SVQFGDLWPS IRVSLLSEQK YGALVNNFAA BACU000311/1-478 ATEPKFPATR LALQNFDMTY GVQFGDLWPS IRVSLLSEQK YGALVNNFAA ENSTTRP00000008868/1-384 ATEPKFPATR LALQNFDMTY SVQFGDLWPS IRVSLLSEQK YGALVNNFAA 201 250 ENSP00000419740/1-384 WDHVSAKLEQ LSAKDFVNEA ISHWELQSEG GQSAAPSPAS WACSPNLRCF bmy_07212T0/1-236 WDRVSAELEQ LSARDFVNEA IFHGEPEPEN GQTAAPPPAS WACSPNLRCF ENSBTAP00000021120/1-384 GDRVSAELEQ LKARDFVNEA VFHREPEPEN SQTAAPSPAS WACSPNLRCF BACU000311/1-478 WDRVSAELEQ LSARDFVNEA IFHGEPEPEN GQTAAPPPAS WACSPNLRCF ENSTTRP00000008868/1-384 WDRVSAELEQ LSARDFVNEA IFHGEPEPKN GQTAAPPPAS WACSPNLRCF 251 300 ENSP00000419740/1-384 TFDRGDISRF PPARPGSLGV MEYYLMDAAS LLPVLALGLQ PGDIVLDLCA bmy_07212T0/1-236 TFARGDVSRF PPARLGSLGV MDYYLMDAAS LLPVLALGLQ PGDTVLDLCA ENSBTAP00000021120/1-384 TFTRGDVSRF PPARLGSLGL MDYYLMDAAS LLPVLALGLQ PGDTVLDLCA BACU000311/1-478 TFARGDVSRF PPARLGSLGV MDYYLMDAAS LLPVLALGLQ PGDTVLDLCA ENSTTRP00000008868/1-384 TFARGDVSRF PPARLGSLGV MDYYLMDAAS LLPVLALGLQ PGDTVLDLCA 301 350 ENSP00000419740/1-384 APGGKTLALL QTGCCRNLAA NDLSPSRIAR LQKILHSYVP EEIRDGNQVR bmy_07212T0/1-236 APGGKTLALL QTGCCLD--- ---------- ---------- ---------- ENSBTAP00000021120/1-384 APGGKTLALL QTGCCRNLAA NDLSTSRTSR LQRVLHSYVP QDVRDKNRVR BACU000311/1-478 APGGKTLALL QTGCCRNLAA NDLSTSRAGR LQKVLHSYVP QDVRDRNRVR ENSTTRP00000008868/1-384 APGGKTLALL QTGCCRNLAA NDLCTSRAGR LQKVLHSYVP QDVRDRNRVR 351 400 ENSP00000419740/1-384 VTSWDGRKWG ELEGDTYDRV LVDVPCTTDR HSLHEEENNI FKRSRKKERQ bmy_07212T0/1-236 ---------- ---------I LLQIP----- ---------- ---------- ENSBTAP00000021120/1-384 VTSWDGRKWG ELEGDTYDRV LVDVPCTTDR HSLHEEENSI FQRSRKKERQ BACU000311/1-478 VTSWDGRKWG ELEGDIYDRV LVDVPCTTDR HSLHEEENNI FQRSRKKERQ ENSTTRP00000008868/1-384 VTSWDGRKWG ELEGDIYDRV LVDVPCTTDR HSLHEEENNI FKRSRKKERQ 401 450 ENSP00000419740/1-384 ILPVLQVQLL AAGLLATKPG GHVVYSTCSL SHLQNEYVVQ GAIELLANQY bmy_07212T0/1-236 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021120/1-384 MLPVLQVQLL AAGLLATKPG GHIVYSTCSL SHLQNEYVVQ GAIELLDNQY BACU000311/1-478 MLPVLQVQLL AAGLLATKPG GHVVYSTCSL SHLQNEYVVQ GTIELLANQY ENSTTRP00000008868/1-384 MLPMLQMQLL AAGLLATKPG GHVVYSTCSL SHLQNEYVVQ GTIELLANQY 451 500 ENSP00000419740/1-384 SIQVQVEDLT HFRRVFMDTF CFFSSCQVGE LVIPNLMANF GPMYFCKMRR bmy_07212T0/1-236 -----LEQRI QF-------- ---------- ---------- ---------- ENSBTAP00000021120/1-384 SIKVQVEDLT HFRKLFMNTF SFFPSCQVGE LVIPNLMANF GPMYFCKMCR BACU000311/1-478 GIKVHVEDLT HFRKLFMDTF SFFPSCQVGE LVIPNLMANF GPMYFCKMCR ENSTTRP00000008868/1-384 DIKVHVEDLT HFRKLFMDTF SFFPSCQVGE LVIPNLMANF GPMYFCKMCR 501 550 ENSP00000419740/1-384 LT bmy_07212T0/1-236 -- ENSBTAP00000021120/1-384 MT BACU000311/1-478 MT ENSTTRP00000008868/1-384 MT