KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:25 2014 Check: 00 .. Name: ENSTTRP00000015282/1-853 Len: 1572 Check: 1838 Weight: 1.00 Name: ENSP00000360642/1-858 Len: 1572 Check: 8240 Weight: 1.00 Name: ENSBTAP00000021129/1-855 Len: 1572 Check: 3939 Weight: 1.00 Name: bmy_09987T0/1-808 Len: 1572 Check: 7410 Weight: 1.00 Name: BACU000268/1-1556 Len: 1572 Check: 8501 Weight: 1.00 // 1 50 ENSTTRP00000015282/1-853 ---------- ---------- ---------- ---------- ---------- ENSP00000360642/1-858 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021129/1-855 ---------- ---------- ---------- ---------- ---------- bmy_09987T0/1-808 ---------- ---------- ---------- ---------- ---------- BACU000268/1-1556 MAYCPTRLRT RQTYSWVDKP LDRKLHYQTY KEMSVKIEGR LPEIDLQVGQ 51 100 ENSTTRP00000015282/1-853 ---------- ---------- ---------- ---------- ---------- ENSP00000360642/1-858 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021129/1-855 ---------- ---------- ---------- ---------- ---------- bmy_09987T0/1-808 ---------- ---------- ---------- ---------- ---------- BACU000268/1-1556 FVLIEGDDDE NPYVAKLVEL FEDDSEPYSK KRARVQWFIR FCEVPVCKQH 101 150 ENSTTRP00000015282/1-853 ---------- ---------- ---------- ---------- ---------- ENSP00000360642/1-858 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021129/1-855 ---------- ---------- ---------- ---------- ---------- bmy_09987T0/1-808 ---------- ---------- ---------- ---------- ---------- BACU000268/1-1556 LLGRKPDAQE IFWYDYPACN SNINAETIIG HVQVVALAPD EVIPMDLKNE 151 200 ENSTTRP00000015282/1-853 ---------- ---------- ---------- ---------- ---------- ENSP00000360642/1-858 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021129/1-855 ---------- ---------- ---------- ---------- ---------- bmy_09987T0/1-808 ---------- ---------- ---------- ---------- ---------- BACU000268/1-1556 KTFFVKLSWN EKKFKPLPPE LFAQLDKLQE GNPRCQKSVE AKTKSTESPS 201 250 ENSTTRP00000015282/1-853 ---------- ---------- ---------- ---------- ---------- ENSP00000360642/1-858 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021129/1-855 ---------- ---------- ---------- ---------- ---------- bmy_09987T0/1-808 ---------- ---------- ---------- ---------- ---------- BACU000268/1-1556 WTTAERVVKR IESRHSTSKS RQTPSHPVTP RARKRLELSS FPRTHNTRIS 251 300 ENSTTRP00000015282/1-853 ---------- ---------- ---------- ---------- ---------- ENSP00000360642/1-858 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021129/1-855 ---------- ---------- ---------- ---------- ---------- bmy_09987T0/1-808 ---------- ---------- ---------- ---------- ---------- BACU000268/1-1556 QQTSWASLES PGRMKRKVAF SEITSPSKRS QADGPQNSSP ALRTPEKAGE 301 350 ENSTTRP00000015282/1-853 ---------- ---------- ---------- ---------- ---------- ENSP00000360642/1-858 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021129/1-855 ---------- ---------- ---------- ---------- ---------- bmy_09987T0/1-808 ---------- ---------- ---------- ---------- ---------- BACU000268/1-1556 IQQCCAEDDK KPSPDGCMIL RTRVAALKTT ETSEERTLTP IKGGQKSSVV 351 400 ENSTTRP00000015282/1-853 ---------- ---------- ---------- ---------- ---------- ENSP00000360642/1-858 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021129/1-855 ---------- ---------- ---------- ---------- ---------- bmy_09987T0/1-808 ---------- ---------- ---------- ---------- ---------- BACU000268/1-1556 PSVILKPENI KMREAKEPVQ DEATSTPHRI RRKSSLLTLN RMRQQLRLHV 401 450 ENSTTRP00000015282/1-853 ---------- ---------- ---------- ---------- ---------- ENSP00000360642/1-858 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021129/1-855 ---------- ---------- ---------- ---------- ---------- bmy_09987T0/1-808 ---------- ---------- ---------- ---------- ---------- BACU000268/1-1556 SAVPGSLPCR EQEFQDMYNF VESKLLDHTG GCMYISGVPG TGKTATVHEV 451 500 ENSTTRP00000015282/1-853 ---------- ---------- ---------- ---------- ---------- ENSP00000360642/1-858 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021129/1-855 ---------- ---------- ---------- ---------- ---------- bmy_09987T0/1-808 ---------- ---------- ---------- ---------- ---------- BACU000268/1-1556 IRCLQQASQA NDVPPFQYIE VNGMKLTEPH QVYVQILQRL TGHRATAHHA 501 550 ENSTTRP00000015282/1-853 ---------- ---------- ---------- ---------- ---------- ENSP00000360642/1-858 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021129/1-855 ---------- ---------- ---------- ---------- ---------- bmy_09987T0/1-808 ---------- ---------- ---------- ---------- ---------- BACU000268/1-1556 AELLAKRFRT RGSSRETTVL LVDELDLLWT QKQDIMYNLF DWPTHKEARL 551 600 ENSTTRP00000015282/1-853 ---------- ---------- ---------- ---------- ---------- ENSP00000360642/1-858 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021129/1-855 ---------- ---------- ---------- ---------- ---------- bmy_09987T0/1-808 ---------- ---------- ---------- ---------- ---------- BACU000268/1-1556 VVLTIANTMD LPERLMMNRV SSRLGLTRMS FQPYTHSQLQ QILVSRLKHL 601 650 ENSTTRP00000015282/1-853 ---------- ---------- ---------- ---------- ---------- ENSP00000360642/1-858 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021129/1-855 ---------- ---------- ---------- ---------- ---------- bmy_09987T0/1-808 ---------- ---------- ---------- ---------- ---------- BACU000268/1-1556 KAFEDDAIQL VARKVAALSG DARRCLDICR RATEICEFSC QKPDSPGLVT 651 700 ENSTTRP00000015282/1-853 ---------- ---------- ---------- ---------- ---------- ENSP00000360642/1-858 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021129/1-855 ---------- ---------- ---------- ---------- ---------- bmy_09987T0/1-808 ---------- ---------- ---------- ---------- ---------- BACU000268/1-1556 TAHLLEAVEE MFSSSYITAI KNSSVLEQSF LRAILAEFRR SGLEEATFQQ 701 750 ENSTTRP00000015282/1-853 ------KMPG PRPRKGPQAS DQGVAAAKQL GLFMEFSPED MLLGMEETED ENSP00000360642/1-858 ------MMPG PRPRKGPQAR GQGVAAAKQM GLFMEFGPED MLLGMDEAED ENSBTAP00000021129/1-855 -------MPG PRPRKGPQAS GQGVAAAKQL GLFVEFSPED VLLGVEEAED bmy_09987T0/1-808 -------MPG PRPRKGPQAS GQGVAAAKQL GLFMEFSPED MLLGMEETED BACU000268/1-1556 TSVQAAKMPG PRPRKGPPAS GQGVAAAKQL GLFMEFSPED MLLGMEETED 751 800 ENSTTRP00000015282/1-853 DGDLEAELLA LTGEAGTTGK KPAPKGQAPL PMAHIEKLAA DCLRDV-EEE ENSP00000360642/1-858 DEDLEAELLA LTGEAQTTGK KPAPKGQAPL PMAHIEKLAA DCMRDVEEEE ENSBTAP00000021129/1-855 DGDLEAELLA LTGEAGTTGR KPAPKGQAPL PMAHIEKLAA DCMQDVEEEE bmy_09987T0/1-808 DGDLEAELLA LTGEAGTTGK KPAPKGQAPL PMAHIEKLAA DCMRDVEEEE BACU000268/1-1556 DGDLEAELLA LTGEAGTTGK KPAPKGQAPL PMAHIEKLAA DCMRDVEEEE 801 850 ENSTTRP00000015282/1-853 EEEGLEDDAD LLTELQEVLG ADEEAGPLDG EETASPGGS- -EKEQENIEP ENSP00000360642/1-858 EEEGLEEDAE LLTELQEVLG VDEETEPLDG DEVADPGGSE EENGLEDTEP ENSBTAP00000021129/1-855 EEEGLEEDAD LLTELQEVLG TDEEAGALDG DETASLGGPE EEKEQENVEP bmy_09987T0/1-808 EEEGLEEDAD LLTELQEVLG ADEEAGPLDG NETASPGGS- EEKEQENIEP BACU000268/1-1556 EEEGLEEDAD LLTELQEVLG ADEEAGPLDG DETASPGGP- EEKEQENSEP 851 900 ENSTTRP00000015282/1-853 PVQTALLTAS VPEAQAAGPQ ELQALLEDRI H-YREAVAS- KETGEAAKVR ENSP00000360642/1-858 PVQTAVLTAS APAAQAGASQ GLHALLEERI HNYREAAASA KEAGEAAKAR ENSBTAP00000021129/1-855 LVQAALLTAP VPAAQAGGPR GLQALLEDRI RNYQEAAASA KEAGEAAKAR bmy_09987T0/1-808 PVQTALLTAS VPAAQAGGPQ GLQALLEDRI HNYREAVASA KETGEAAKAR BACU000268/1-1556 PVQTALLTAS VPAAQ----- GLQALLEDRI HNYREAVASA KETGEAAKAR 901 950 ENSTTRP00000015282/1-853 RCERG-KTLE SQLAAVRKGR KISEDEIPPP VALGKRPLAP QETTSRNPEA ENSP00000360642/1-858 RCERGLKTLE SQLASVRRGR KINEDEIPPP VALGKRPLAP QEPANRSPET ENSBTAP00000021129/1-855 RCERGLKTLE SQLAAVRKGK KISEDEIPPP VALGRRPLVP QETTNKSPEA bmy_09987T0/1-808 RCERGLKTLE SQLAAVRKGR KISEDEIPPP VALGKRPLAP QETTNRSPEP BACU000268/1-1556 RCERGLKTLE SQLAAVRKGR KISEDEIPPP VALGKRPLAP QETTNRSPEA 951 1000 ENSTTRP00000015282/1-853 EPPAPPSVEP DNPSQPETSL LGSPSISGPP --DSDPDPRA LLLARQREYK ENSP00000360642/1-858 DPPAPPALES DNPSQPETSL ---PGISAQP VSDLDPDPRA LLSSRQREYK ENSBTAP00000021129/1-855 EPPAAPSVEP DNPSQPETSL LGSPGISAPP --DSDPDPRA LLLARQREYK bmy_09987T0/1-808 EPPAPPSVEP DNPSQPETSL LGSTSISGPP --DSDPDPRA LLLARQREY- BACU000268/1-1556 EPPAPRSVEP DNPSQPETSL LGSPSISGPP --DSDPDPRA LLLARQREYK 1001 1050 ENSTTRP00000015282/1-853 VAALNAKRAG DLDRARELMR IGKXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000360642/1-858 VAALSAKRAG ELDRARELMR IGKRFGAVLE ALEKGQPVDL SAMPPAPEDL ENSBTAP00000021129/1-855 VAALNAKRAG DLDRARELMR VGKRFAAVLE ALEKGQPVDL SAMPPSPEDL bmy_09987T0/1-808 ---------- ---------- --KRFGAVLE ALEKGQPVDL SAMPPAPEDL BACU000268/1-1556 VAALNAKRAG DLDRARELMR IGKRFGAVLE ALEKGQPVDL SAMPPAPEDL 1051 1100 ENSTTRP00000015282/1-853 XXX-XXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000360642/1-858 KPQ-QASQAP TAPSVIPPAV ERVQPVMAPD VPATPVAPTE SQTVLDALQQ ENSBTAP00000021129/1-855 KPLPQASQAP TAPSDAPPAV ERMHPVMASD IPAAPVAPAE PQTVLDALQQ bmy_09987T0/1-808 KPLPQASKAS TAPSDVHPAV ERVQPVMAPD IPATPVAPTE PQTVLDALQQ BACU000268/1-1556 KPRPQASKAS TAPSDAHPAV ERVQPVMASD IPATPVAPTE PQTVLDALQQ 1101 1150 ENSTTRP00000015282/1-853 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXQ YQDAIRAHRA GRKVDFAELP ENSP00000360642/1-858 RLNKYREAGI QARSGGDERK ARMHERIAKQ YQDAIRAHRA GRKVNFAELP ENSBTAP00000021129/1-855 RLNKYREAGT QARGSGDERK ARMHERIAKQ YQDAIRAHRA GRKVDFAELP bmy_09987T0/1-808 RLNKYREAGT QARGSGDERK ARMHERIAKQ YQDAIRAHRA GRKVDFAELP BACU000268/1-1556 RLNKYREAGT QARGSGDERK ARMHERIAKQ YQDAIRAHRA GRKVDFAELP 1151 1200 ENSTTRP00000015282/1-853 VPPGFPPIPG WEPTVGTEED VVAATLAAAQ KLASSEAAAP AEEDEDEPPG ENSP00000360642/1-858 VPPGFPPIPG LESTMGVEED AVAATLAAAE KLASAEDSAP ADKDEDEPPG ENSBTAP00000021129/1-855 VPPGFPPIPG LEPTVATEED MMAATLAAAQ KLASAGDTAP VEEEEDNN-- bmy_09987T0/1-808 VPPGFPPIPG WEPTMGTEED VVAATLAAAQ KLASSEDAAP AEEDEDED-- BACU000268/1-1556 VPPGFPPIPG WEPTMGTEED VVAATLAAAQ KLASSEDAAP AEDDEDED-- 1201 1250 ENSTTRP00000015282/1-853 HLQDEPPAQA PVAKKPAQPL VPSSRPLPEP KASSSKESLS PAVQEQVALL ENSP00000360642/1-858 HLQGEPPAQA PVAKKPARPT VPSSQRLPEP RASSSKESPS PSVREQLALL ENSBTAP00000021129/1-855 --KDEPPAQA PVAKKPAQPL APSSRSLPEP KTSSSKEVLS PSAREQLALL bmy_09987T0/1-808 --KDEPPAQA PVAKKPTQPL VPSSRPLPEP KASSSKESLS PAVREQVALL BACU000268/1-1556 --KDEPPAQA PVAKKPAQPL VPSCRPLPEP KASSSKESLS PAVREQVALL 1251 1300 ENSTTRP00000015282/1-853 QARKLQYQRA ALQAKRGQDL EQAKAHLRVA KSLEAQIIQV RAGRPVDLSK ENSP00000360642/1-858 EARKLQYQRA ALQAKRSQDL EQAKAYLRVA KWLEAQIIQA RSGRPVDLSK ENSBTAP00000021129/1-855 EARKLQYQRA ALQAKRGRDL EQAKAHLRVA KSLEAQITQV RAGRPVDLSK bmy_09987T0/1-808 QARKLQYQRA ALQAKRGQDL EQAKAHLRVA KSLEAQITQV RAGRPVDLSK BACU000268/1-1556 QARKLQYQRA ALQAKRGQDL EQAKAHLRVA KSLEAQITQV RAGRPVDLSK 1301 1350 ENSTTRP00000015282/1-853 VPSPLTDEEG DFILIHHEDL RLSQKAEEVY AQLQKMLLEQ HEKCVLFSKQ ENSP00000360642/1-858 VPSPLTDEEG DFILIHHEDL RLSQKAEEVY AQLQKMLLEQ QEKCLLFSKQ ENSBTAP00000021129/1-855 VPSPLTDEEG DFILIHHEDL RLSQKAEEVY AQLQKMLLEQ HEKCLLFSKQ bmy_09987T0/1-808 VPSPLTDEEG DFILIHHEDL RLSQKAEEVY AQLQKMLLEQ HEKCVLFSKQ BACU000268/1-1556 VPSPLTDEEG DFILIHHEDL RLSQKAEEVY AQLQKMLLEQ HEKCVLFSKQ 1351 1400 ENSTTRP00000015282/1-853 FMHQGNVAET TRFENLAQDR KKQLEILQLA QAQGLDPPSH HFELKTFQTV ENSP00000360642/1-858 FMHQGNVAET TRFEKLAQDR KKQLEILQLA QAQGLDPPTH HFELKTFQTV ENSBTAP00000021129/1-855 FMHQGNVAET TRFEKLAQDR KQQLEILQLA QAQGLDPPSH HFELKTFQTV bmy_09987T0/1-808 FMHQGNVAET TRFEKLAQDR KXQLEILQLA QAQGLDPPSH HFELKTFQTV BACU000268/1-1556 FMHQGNVAET TRFEKLAQDR KKQLEILQLA QAQGLDPPSH HFELKTFQTV 1401 1450 ENSTTRP00000015282/1-853 RIFAELNSTE MHLIVVRGMN LPAPPGVTPD DLDAFVRFEF HYPNLDQAQK ENSP00000360642/1-858 RIFSELNSTE MHLIIVRGMN LPAPPGVTPD DLDAFVRFEF HYPNSDQAQK ENSBTAP00000021129/1-855 RIFAELNSTE MHLIVVRGMN LPAPPGVTPD DLDAFVRFEF HYPNSDQAQK bmy_09987T0/1-808 RIFAELNSTE MHLIVVRGMN LPAPPGVTPD DLDAFVRFEF HYPNS----- BACU000268/1-1556 RIFAELNSTE MHLIVVRGMN LPAPPGVTPD DLDAFVRFEF HYPNSDQAQK 1451 1500 ENSTTRP00000015282/1-853 NKTAVVKNTN SPEFNQLFKL NINRNHRGFR RVIQSKGIKF EIFHKGSFFR ENSP00000360642/1-858 SKTAVVKNTN SPEFDQLFKL NINRNHRGFK RVIQSKGIKF EIFHKGSFFR ENSBTAP00000021129/1-855 NKTAVVKNTN SPEFDQLFKL NINRNHRGFR RVIQNKGIKF EIFHKGSFFR bmy_09987T0/1-808 ---------- ------LFKL NINRNHRGFR RVIQSKGIKF EIFHKGSFFR BACU000268/1-1556 NKTAVVKNTN SPEFDQLFKL NINRNHRGFR RVIQSKGIKF EIFHKGSFFR 1501 1550 ENSTTRP00000015282/1-853 SDKLVGTAHL KLERLENECE IREIV--EVL DGRKPTGGKL EVKVRL--RE ENSP00000360642/1-858 SDKLVGTAHL KLERLENECE IREIV--EVL DGRKPTGGKL EVKVRL--RE ENSBTAP00000021129/1-855 SDKLVGTAHL KLERLENECE IREIV--EVL DGRKPTGGKL EVKVRL--RE bmy_09987T0/1-808 SDKLVGTAHL KLERLENECP GRKEAYWGQA GGEGEAAGAS EWPGRADGHR BACU000268/1-1556 SDKLVGTAHL KLERLENECE IREIV--EVL DGRKPTGGKL EVKVRL--RE 1551 1600 ENSTTRP00000015282/1-853 PLSGQDVQMV TENWLVLEPR GL ENSP00000360642/1-858 PLSGQDVQMV TENWLVLEPR GL ENSBTAP00000021129/1-855 PLSGQDVQMV TENWLVLEPR GL bmy_09987T0/1-808 ELAGPGAQGP V-RWAAL--- -- BACU000268/1-1556 PLSGQDVQMV TENWLVLEPR GL