KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:30 2014 Check: 00 .. Name: ENSP00000342012/1-476 Len: 634 Check: 101 Weight: 1.00 Name: ENSBTAP00000021161/1-487 Len: 634 Check: 3739 Weight: 1.00 Name: ENSTTRP00000014358/1-433 Len: 634 Check: 2139 Weight: 1.00 Name: bmy_12281T0/1-405 Len: 634 Check: 1122 Weight: 1.00 Name: BACU000596/1-342 Len: 634 Check: 4742 Weight: 1.00 // 1 50 ENSP00000342012/1-476 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021161/1-487 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014358/1-433 ---------- ---------- ---------- ---------- ---------- bmy_12281T0/1-405 MGRQEALDSG RPRAPGRGTL SPMGLRKRPM LLETLGRRGG GLWEDRDIWE BACU000596/1-342 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000342012/1-476 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021161/1-487 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014358/1-433 ---------- ---------- ---------- ---------- ---------- bmy_12281T0/1-405 RREKAADLEE GRRRSQKEGE KGGGHTDAGK GKGQASKLGW EEDTQERRNE BACU000596/1-342 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000342012/1-476 --MKFQGPLA CLLLALCLGS GEAGPLQSGE ESTGTNIGEA LGHGLGDALS ENSBTAP00000021161/1-487 --MKLKGSLA CLLLFLLLGS GEASPLQSGE ENTREEVGEA IGH------- ENSTTRP00000014358/1-433 --MKLQGCLA CLLLALCLGS GEAGLLLSGG ESSGAGAMET TGH------- bmy_12281T0/1-405 AEMKLQGSLA CLLLVLCRGS GEAGPLLSGG ESTGAGAMEA TGHGVGEATG BACU000596/1-342 --MKLQGSLA CLLLVLCLGS GEAGPLLSGG ESAGAGAMEA TGH------- 151 200 ENSP00000342012/1-476 EGVGKAIGKE AGGAAGSKVS EALGQGTREA VGTGVRQVPG FGVADALGNR ENSBTAP00000021161/1-487 -GVGEALGDV LGEAAIHGIE KAIGQGTGKT EGLGIREARD PHLGDALAHK ENSTTRP00000014358/1-433 -GAGEAIGQE VGEAIKHGVG EATGGGDGEA AGSGVKETMG PGVGDALARG bmy_12281T0/1-405 HGVGEAIGQE VGEAVKHGIG EATGGGDGEA AGSGVKEAMG PGVGDDLAHG BACU000596/1-342 -GVGEAIGQE VGEAIKHGVG EATGGGDGEA VGSGVKEATG PGVGDDLAHG 201 250 ENSP00000342012/1-476 VGEAAHALGN TGHEIGRQAE DVIRHGADAV RGSWQGVPGH NGAWETS--- ENSBTAP00000021161/1-487 LKEASHALKN TGSEADRQAE NIIGHGVDPA HKSWQGTPGS NGAWGTNGQP ENSTTRP00000014358/1-433 VEEAAHALGN TGSEAGRQAE NVIQHGVDAA HSSSQGMPGG NGALGTNGQP bmy_12281T0/1-405 VEDAAHALGN TGSEAGRQAE NVIQHGVDAA HSSWQGMPXG NSALGTNGQP BACU000596/1-342 VEDAAHALGN TGSEADRQAE NVIQHGVDAA HSSWQGTPGG NGALGAHGQP 251 300 ENSP00000342012/1-476 --GGHGIFGS QGGLGGQGQG NPGGLGTPWV HGYPGNSAGS FGMNPQGAPW ENSBTAP00000021161/1-487 PSGGHGIPGS --------QG SSGGPGDTQD QVFSGGSGGS FGANAQGGSW ENSTTRP00000014358/1-433 PSGGHGSSGS --------PG NPGGPGIPWD QVYSGGSGGS FGTNSRGGSW bmy_12281T0/1-405 PSGGHGTSGS --------PG NPGGPGIPWD HVYSGGSGGS FGTNSQGGSW BACU000596/1-342 PPGGHGTSGS --------PG NAGGPGIPWD HVYSGGSGGS FGTNSQGGSW 301 350 ENSP00000342012/1-476 GQGGNGGPPN FGTNTQGAVA QPGYGSVRAS -NQNEGCTNP PPSG------ ENSBTAP00000021161/1-487 GQGGHRGAFN LGANSQGTSP QP--GSVRSN NNRNTECTTP PGSGGSSGNS ENSTTRP00000014358/1-433 GHEGYGGAFN LGTNTQADVA QPPYGSRRSS DNPNAECTNR PPSG------ bmy_12281T0/1-405 GHGGHGGAFN LGTNTQAAVA QTPYGSGRGS DNPNAE---- ---------- BACU000596/1-342 GHG---GAFN VGTNTQAAVA QTLYGSGRGS DKPNAE---- ---------- 351 400 ENSP00000342012/1-476 ---------- -----SGGGS SNSGGGSGSQ SGSSGSGSNG DNNNGSSSGG ENSBTAP00000021161/1-487 GGSSSSGSST NGGGSSGGSN GGSNGSTSSN SGSSNGGGSS NSGGSNGGGS ENSTTRP00000014358/1-433 ---------- ---------- ---------- ----SGGSSS NSGGSSSDGR bmy_12281T0/1-405 ---------- ---------- ---------- ---------- ---------- BACU000596/1-342 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000342012/1-476 SSSGSSSGGS SGGSSGGSSG NSGGSRGDSG SESSWGSSTG SSSGNHGGSG ENSBTAP00000021161/1-487 NGGGSSNGGG SNAGSSGSSG SSSDTRNSDH GGSSQGYNPS PSSGSRVGSG ENSTTRP00000014358/1-433 NSGGSISGGS SGGSNSSSGG SSE------- --LHWGYNTS SSLGSRGGSG bmy_12281T0/1-405 ---------- ---------- ---------- ---------- ---------- BACU000596/1-342 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000342012/1-476 GGNGHKPGCE KP----GNEA RGSGESG--- ------IQNS ETSPGMFNFD ENSBTAP00000021161/1-487 VRN--KPECD NPHVSGGSGG QGQGSSGEGE AVSGINTLNS QTSSESFNFD ENSTTRP00000014358/1-433 -GN--KPECD NP----RSEV HVSGESG--- -------QNS QLFPGLFGLD bmy_12281T0/1-405 ---------- ---------- ---------- --------NS QTSPGLFNFD BACU000596/1-342 ---------- ---------- ---------- --------NS QTSPGLFNFD 501 550 ENSP00000342012/1-476 TFWKNFKSKL GFINWDAINK NQVPPPSTRA LLYFSRLWED FKQNTPFLNW ENSBTAP00000021161/1-487 TFWKNFKSKL GFINWDALNK GQAPPPSTRA LLYFRRLWED FKHNTPFLNW ENSTTRP00000014358/1-433 TFWKNLKSKL GFMNWDTISK NQIPDLRTRI FLYFCRLWEK FKQSTPFLNW bmy_12281T0/1-405 AFWKNLKSML GFINWDAVNK N--------- ---------- FKRNTPFLNW BACU000596/1-342 AFWMNLKSML GFINWDAISK N--------- ---------- FKRNTPFLNW 551 600 ENSP00000342012/1-476 KAIIE-GADA SSLQKRAGRD DQNY----NY NQHAYPTAYG GKYSVKTPAK ENSBTAP00000021161/1-487 KVITE-GEDL PSLQKRAGGA GQPG------ ---------- --------TG ENSTTRP00000014358/1-433 NAITE--IRA LSDQRRVGAA GQNY----DY NQQKYPTASG GQHSAQIPTK bmy_12281T0/1-405 KAIIEPGTEC QDVEAVT--- ---------- ---------- --------SK BACU000596/1-342 KAILEWGVTI SSSEGVTVGK NVPGPDEATY AQFLNVDKLR SVLEGNDFLN 601 650 ENSP00000342012/1-476 GGVSPSSSAS RVQPGLLQWV KFW------- ---- ENSBTAP00000021161/1-487 WQDAVAGTAK NYNYNQQGPP AALGGQYPAK TPAK ENSTTRP00000014358/1-433 CGVTVSSSXX XXXXXXXXXX KFW------- ---- bmy_12281T0/1-405 WGVTISSSKI TLNRD----- ---------- ---- BACU000596/1-342 WHALVESVKR KLPFLNWDAF PKLRGMSRAA ADAQ