KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:31 2014 Check: 00 .. Name: ENSTTRP00000006669/1-916 Len: 1085 Check: 1667 Weight: 1.00 Name: ENSP00000276282/1-1052 Len: 1085 Check: 8895 Weight: 1.00 Name: ENSBTAP00000021162/1-925 Len: 1085 Check: 223 Weight: 1.00 Name: bmy_09233T0/1-1083 Len: 1085 Check: 3831 Weight: 1.00 Name: BACU018282/1-864 Len: 1085 Check: 5131 Weight: 1.00 // 1 50 ENSTTRP00000006669/1-916 ---------- ---------- ---------- ---------- ---------- ENSP00000276282/1-1052 MAGMDSGNLK TARLWRDAAL RARKLRSNLR QLTLTAAGAC PGAGADALES ENSBTAP00000021162/1-925 ---------- ---------- ---------- ---------- ---------- bmy_09233T0/1-1083 MAGTDSGNLK TVRLWRDAAL RARKLRSNLR QLTLSAAGGC P--GTDQLDS BACU018282/1-864 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006669/1-916 ---------- ---------- ---------- ---------- ---------- ENSP00000276282/1-1052 PASPQLVLPA NLGDIEALNL GNNGLEEVPE GLGSALGSLR VLVLRRNRFA ENSBTAP00000021162/1-925 -------XPA NIGDIEVLNL GNNGLEEVPD GLGSALGSLR VLVLRRNRFA bmy_09233T0/1-1083 PDAPQLLLPA NIGDIEVLNL GNNGLEEVPD GLGSALGSLR VLVLRRNRFA BACU018282/1-864 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000006669/1-916 ---------- ---------- ---------- --------RF SSNHHQLPAL ENSP00000276282/1-1052 RLPPAVAELG HHLTELDVSH NRLTALGAEV VSALRELRKL NLSHNQLPAL ENSBTAP00000021162/1-925 QLPQAVAELG HHLTELDVSH NRLSVLGAEA VGALRELRKL NLSHNQLPAL bmy_09233T0/1-1083 RLPPAVAELG HHLTELDVSH NRLSVLSAEV VSALRELRKL NLSHNQLPAL BACU018282/1-864 ---------- ---------- ---------- --------KL NLSHNQLPAL 151 200 ENSTTRP00000006669/1-916 TARWGGWAHR EEQDVSFNQL AHLPDFLSFF SRVRTLDVDH NQLTAFPWQL ENSP00000276282/1-1052 PAQLGALAHL EELDVSFNRL AHLPDSLSCL SRLRTLDVDH NQLTAFPRQL ENSBTAP00000021162/1-925 PAQLGALVHL EELDVSFNRL AHLPDSFAGL SRLRTLDVDH NQLTAFPRQL bmy_09233T0/1-1083 PAQLGALIHL EELDVSFNRL AHLPDSLSCL SRLRAVDVDH NQLTAFPGQL BACU018282/1-864 PAQLGALIHL EELDVSFNRL AHLPDSLSCL SRLRAVDVDH NQLTAFPWQL 201 250 ENSTTRP00000006669/1-916 LQLAALEELD VSSKRLRGLP EDISALRALK ILWLSGTELG TLPSGFCELA ENSP00000276282/1-1052 LQLVALEELD VSSNRLRGLP EDISALRALK ILWLSGAELG TLPAGFCELA ENSBTAP00000021162/1-925 LQLVALEELD VSSNRLRGLP EDISALRALK ILWLSGAELG TLPSGFCELA bmy_09233T0/1-1083 LQLAALEELD VSSNRLRGLP EDISALRALK ILWLSGTELG TLPSGFCELA BACU018282/1-864 LQLAALEELD VSSNRLRGLP EDISALRALK ILWLSGTELG TLPSGFCELA 251 300 ENSTTRP00000006669/1-916 SLESLMLDNN GLQALPAQFS RLQRLKMLNL SSNLLEEFPA ALLPLAGLEE ENSP00000276282/1-1052 SLESLMLDNN GLQALPAQFS CLQRLKMLNL SSNLFEEFPA ALLPLAGLEE ENSBTAP00000021162/1-925 SLESLMLDNN GLRALPAQFS RLQRLKMLNL SSNLLEEFPA ALLPLAGLEE bmy_09233T0/1-1083 SLESLMLDNN GLQALPAQFS RLQRLKMLNL SSNLLEEFPA ALLPLAGLEE BACU018282/1-864 SLESLMLDNN GLQALPAQFS RLQRLKMLNL SSNLLQEFPA ALLPLAGLEE 301 350 ENSTTRP00000006669/1-916 LYLSRNQLTS VPSLISGLGR LLTLWLDNNR LRYLPDSIVE LTGLEELVLQ ENSP00000276282/1-1052 LYLSRNQLTS VPSLISGLGR LLTLWLDNNR IRYLPDSIVE LTGLEELVLQ ENSBTAP00000021162/1-925 LYLSRNQLTS VPCLISGLGR LLTLWLDNNR IRYLPDSIVE LTGLEELVLQ bmy_09233T0/1-1083 LYLSRNQLTS VPSLISGLGR LLTLWLDNNR IRYLPDSIVE LTGLEELVLQ BACU018282/1-864 LYLSRNQLTS VPSLISGLGR LLTLWLDNNR IRYLPDSIVE LTGLEELVLQ 351 400 ENSTTRP00000006669/1-916 GNQIAVLPDN FGRLSRVGLW KIRDNPLIQP PYEVCMKGIP YIAAYQKELA ENSP00000276282/1-1052 GNQIAVLPDH FGQLSRVGLW KIKDNPLIQP PYEVCMKGIP YIAAYQKELA ENSBTAP00000021162/1-925 GNQIAVLPDN FGQLSRVGLW KIKDNPLIQP PYEVCMKGIP YIAAYQKELA bmy_09233T0/1-1083 GNQIAVLPDN FGQLSRVGLW KIKDNPLIQP PYEVCMKGIP YIAAYQKELA BACU018282/1-864 GNQIAVLPDN FGQLSRVGLW KIKDNPLIQP PYEVCMKGIP YIAAYQKELA 401 450 ENSTTRP00000006669/1-916 HSQPAVQPRL KLLLMGHKAA GKTLLRRCLT EDRVEGNQGG GDKEKSHPPS ENSP00000276282/1-1052 HSQPAVQPRL KLLLMGHKAA GKTLLRHCLT EERVEGCPGG GDKEKCYPPS ENSBTAP00000021162/1-925 HSQPAVQPRL KLLLMGQKAA GKTLLRHCLT EDRVEGKLGG GGQEKTYPPS bmy_09233T0/1-1083 HSQPAVQPRL KLLLMGHKAS GKTLLRHCLT EDRVEGNQGG GDKEKSHPPS BACU018282/1-864 HSQPAVQPRL KLLLMGYKAA GKTLLRHCLT EDRVEGNQGG EDK-KSHPPS 451 500 ENSTTRP00000006669/1-916 PPPVSKGIEV TSWTADASRG LRFIVYDLAG DDSYEVIQPF FLSPGALYVL ENSP00000276282/1-1052 PPPVSKGIEV TSWTADASRG LRFIVYDLAG DESYEVIQPF FLSPGALYVL ENSBTAP00000021162/1-925 PPPGSKGIEV TSWTADASRG LRFIVYDLAG DERYEVIQPF FLSPGALYVL bmy_09233T0/1-1083 PPPVSKGIEV TSWTADASRG LRFIVYDLAG DDSYEVIQPF FLSPGALYVL BACU018282/1-864 PPPVSKGIEV TSWTADASRG LRFIVYDLAG DDSYEVIQPF FLSPGALYVL 501 550 ENSTTRP00000006669/1-916 VVNLATYEPL RFPTTVGSFL HRVGARVPHA VVCVVGTHAD LCGEQELEEK ENSP00000276282/1-1052 VVNLATYEPR HFPTTVGSFL HRVGARVPHA VVCIVGTHAD LCGERELEEK ENSBTAP00000021162/1-925 VVNLATYEPL RFPTTVGSFL HRVGARVPHA VVCIVGTHAD LCGEQELEEK bmy_09233T0/1-1083 VVNLATYEPL RFPTTVGSFL HRVGARVPHA VVCIVGTHAD LCGEQELEEK BACU018282/1-864 VVNLATYEPL RFPTTVGSFL HRVGARVPHA VVCIVGTHAD LCGEQELEEK 551 600 ENSTTRP00000006669/1-916 CLDIHRQIAL QEKHDAEGLS RLAQVVDEAL ARDFELRSAS PHAAYYGVSD ENSP00000276282/1-1052 CLDIHRQIAL QEKHDAEGLS RLAKVVDEAL ARDFELRSAS PHAAYYGVSD ENSBTAP00000021162/1-925 CLDIHRQIAL QEKHDAEGLS RLAQVVDEAL ARDFELRSAS PHAAYYGVSD bmy_09233T0/1-1083 CLDIHRQIAL QEKHDAEGLS RLAQVVDEAL ARDFELRSAS PHAAYYGVSD BACU018282/1-864 CLDIHRQIAL QEKHDAEGLS HLAQVVDEAL ARDFELRSAS PHAAYYGVSD 601 650 ENSTTRP00000006669/1-916 KNLRRRKAHF QYLLNHRLQI LSPVLPVSCR DPRHIQRLRD KLLSVAEHRE ENSP00000276282/1-1052 KNLRRRKAHF QYLLNHRLQI LSPVLPVSCR DPRHLRRLRD KLLSVAEHRE ENSBTAP00000021162/1-925 KNLRRRKAHF QYLLNHRLQI LSPVLPVSCR DPRQLQRLRD KLLSVAEHRE bmy_09233T0/1-1083 KNLRRRKAHF QYLLNHRLQI LSPVLPVSCR DPRQLQRLRD KLLSVAEHRE BACU018282/1-864 KNLRRRKAHF QYLLNHRLQI LSPVLPVSCR DPRQLQRLRD KLLSVAEHRE 651 700 ENSTTRP00000006669/1-916 IFPNLHRVLP RSWQVLEELH FQPPQAQRLW LSWWDSARLG LQAGLTEDRL ENSP00000276282/1-1052 IFPNLHRVLP RSWQVLEELH FQPPQAQRLW LSWWDSARLG LQAGLTEDRL ENSBTAP00000021162/1-925 IFPNLHRVLP RSWQVLEELH FQPPQAQRLW LSWWDSARLG LQAGLTEDRL bmy_09233T0/1-1083 IFPNLHRVLP RSWQVLEELH FQPPQAQRLW LSWWDSARLG LQAGLTEDRL BACU018282/1-864 IFPNLHRVLP RSWQVLEELH FQPPQAQRLW LSWWDSARLG LQAGLTEDRL 701 750 ENSTTRP00000006669/1-916 QSALSYLHES GKLLYFEDSP ALKEHVFHNL SRLIDILNVF FQRDPSLLLH ENSP00000276282/1-1052 QSALSYLHES GKLLYFEDSP ALKEHVFHNL TRLIDILNVF FQRDPSLLLH ENSBTAP00000021162/1-925 QSALSYLHES GKLLYFEDSP ALKEHVFHNL SRLIDILNVF FQRDPSLLLH bmy_09233T0/1-1083 QSALSYLHES GKLLYFEDSP ALKEHVFHNL SRLIDILNVF FQRDPSLLLH BACU018282/1-864 QSALSYLHES GKLLYFEDSP ALKEHVFHNL SRLIDILNVF FQRDPSLLLH 751 800 ENSTTRP00000006669/1-916 KLLLGTSGEG EAESRGGSSP LMAPPAPSQD ALRATQLHHY VEGFLLHGLL ENSP00000276282/1-1052 KLLLGTSGEG KAE--GESSP PMARSTPSQE LLRATQLHQY VEGFLLHGLL ENSBTAP00000021162/1-925 KLLLGT---- ---------- -------SED ALRATQLHHY VEGFLLHGLL bmy_09233T0/1-1083 KLLLGTSGEG EAESQGESSP LMAPPAPSQD AFRATQLHHY VEGFLLHGLL BACU018282/1-864 KLLLGTSGEG EAESRGESSP LMAPPAPSQD ALRATQLHHY VEGFLLHGLL 801 850 ENSTTRP00000006669/1-916 PAHVIRLLLK PHIQAQQDLQ LLLELLEKMG LCYCLNKAKG KPLNGSTAWY ENSP00000276282/1-1052 PAHVIRLLLK PHVQAQQDLQ LLLELLEKMG LCYCLNKPKG KPLNGSTAWY ENSBTAP00000021162/1-925 PAHVIRLLLK PHVQAQQDLQ LLLELLEKMG LCYCLNKAKG KPLNGSTAWY bmy_09233T0/1-1083 PAHVIRLLLK PHIQAQQDLQ LLLELLEKMG LCYCLNKAKG KPLNGSTAWY BACU018282/1-864 PAHVIRLLLK PHIQAQQDLQ LLLELLEKMG LCYCLNKAKG KPLNGSTAWY 851 900 ENSTTRP00000006669/1-916 KFPCYVQNEV PHAEACINGT NLTGQSFVAE QLQIEYSFPF TFPPSLFARY ENSP00000276282/1-1052 KFPCYVQNEV PHAEAWINGT NLAGQSFVAE QLQIEYSFPF TFPLGLFARY ENSBTAP00000021162/1-925 KFPCYVQNEV PHAEAWINGT NLAGQSFVAE QLQIEYSFPF TFPPGLFARY bmy_09233T0/1-1083 KFPCYVQNEV PHAEAWINGT NLAGQSFVAE QLQIEYSFPF TFPPSLFARY BACU018282/1-864 KFPCYVQNEV PHAEAWINGT NLAGQSFVAE QLQIEYSFPF TFPPSLFARY 901 950 ENSTTRP00000006669/1-916 SVQINSHVVH RSDGKLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXHAS ENSP00000276282/1-1052 SVQINSHVVH RSDGKFQIFA YRGKVPVVVS YRPARGVLQP DTLSIASHAS ENSBTAP00000021162/1-925 SVQINNHVVH RSDGKLQIFA YRGKVPVVVS YRPAKGVLQP DTLSIASHAS bmy_09233T0/1-1083 SVQINSHVVH RSDGKLQIFA YRGKVPVVVS YRPAKGVLQP DTLSIASHAS BACU018282/1-864 SVQINSHVVH RSDGKLQIFA YRGKVPVVVS YRPAKGVLQP DTLSIASHAS 951 1000 ENSTTRP00000006669/1-916 LPNIWTAWQA ITPLVEELNV LLQEWPGLHY TVHILCSKCL KRGSPNPHAF ENSP00000276282/1-1052 LPNIWTAWQA ITPLVEELNV LLQEWPGLHY TVHILCSKCL KRGSPNPHAF ENSBTAP00000021162/1-925 LPNIWTAWQA ITPLVEELNV LLQEWPGLHY TVHILCSKCL KRGSPNPHAF bmy_09233T0/1-1083 LPNIWTAWQA ITPLVEELNV LLQEWPGLHY TVHILCSKCL KRGSPNPHAF BACU018282/1-864 LPNIWTAWQA ITPLVEELNV LLQEWPGLHY TVHILCSKCL KRGSPNPHAF 1001 1050 ENSTTRP00000006669/1-916 PGELLSQPRP EGVAEIICPK NGSERVNVAL VYPPTPTVIS PCSKKNV--- ENSP00000276282/1-1052 PGELLSQPRP EGVAEIICPK NGSERVNVAL VYPPTPTVIS PCSKKNV--- ENSBTAP00000021162/1-925 P--------- ---------- ---------- ---------- ---------- bmy_09233T0/1-1083 PDCLLNLTGS LGELFKVNRG GFGDKQKAVS ILNAARNSIR KELDTNISEV BACU018282/1-864 P--------- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000006669/1-916 ---------- -GEKHRNQ-- ---------- ----- ENSP00000276282/1-1052 ---------- -GEKHRNQ-- ---------- ----- ENSBTAP00000021162/1-925 ---------- -GK------- ---------- ----- bmy_09233T0/1-1083 NVQIGSDRQH GGKEEPTFSE HVIKANIGWD DLDSP BACU018282/1-864 ---------- -GK------- ---------- -----