KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:35 2014 Check: 00 .. Name: ENSTTRP00000013036/1-1447 Len: 1549 Check: 986 Weight: 1.00 Name: ENSP00000239440/1-1544 Len: 1549 Check: 4578 Weight: 1.00 Name: ENSBTAP00000021198/1-1519 Len: 1549 Check: 8235 Weight: 1.00 Name: bmy_12401T0/1-1444 Len: 1549 Check: 4427 Weight: 1.00 Name: BACU015974/1-1378 Len: 1549 Check: 2806 Weight: 1.00 // 1 50 ENSTTRP00000013036/1-1447 ---------- ---------- ---------- ---------- ---------- ENSP00000239440/1-1544 MAAPQDLDIA VWLATVHLEQ YADTFRRHGL ATAGAARGLG HEELKQLGIS ENSBTAP00000021198/1-1519 MAAPQDLDIA VWLALVHLEQ YADAFRQQGL ATAGAARGLG HGELRQLGVN bmy_12401T0/1-1444 MAAPQDLDIA VWLATVHLEQ YADVFRRHGL ATAGAARGLG HEELRQLGIN BACU015974/1-1378 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013036/1-1447 ---------- ---------- ---------- ---------- ------KPRT ENSP00000239440/1-1544 ATGHRKRILR LLQTGTEEGS LDPKSDSAME PSPSPAPQAQ PPKPVPKPRT ENSBTAP00000021198/1-1519 ATGHRKRILR LLQAGTAEGP PDPQPESAME PSHSPAPPAQ PTKPVPKPRT bmy_12401T0/1-1444 ATGHRKRILR LLQAGTAEGS PDPQLESAME PSPSPAPQAQ PPKPVPKPRT BACU015974/1-1378 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000013036/1-1447 VFGVLSGYNI IQRL-LSPAL WRPEASKSPE P--SPRSHPV L-RSSSEQ-S ENSP00000239440/1-1544 VFGGLSGPAT TQRPGLSPAL GGPGVSRSPE P--SPRPPPL P-TSSSEQSS ENSBTAP00000021198/1-1519 VFGGLSGSAT TQRPGLGPAV WRPEASKSPE PSLSPRSPTV PPRSSSEQPS bmy_12401T0/1-1444 VFGGLSGSTT TQRPGLSPAL WRPEASKSPE L--SPRSPPV PQRSSSEQPS BACU015974/1-1378 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000013036/1-1447 ALNTVEMMPN AIYFGLDLRC GAQTAQDAAP DSSQTTAPTP ALRPTTGTVH ENSP00000239440/1-1544 ALNTVEMMPN SIYFGLDSRG RAQAAQDKAP DSSQISAPTP ALRPTTGTVH ENSBTAP00000021198/1-1519 ASNTVEMMPN AIYFGLDLRG GAQTAQDMAP DSSQTAAPTP ALRPTTGTVH bmy_12401T0/1-1444 ALNTVEMMPN AIYFGLDLRG GAQTAQDMAP DSSQTTAPTP ALRPATGTVH BACU015974/1-1378 ------MMPN AIYFGLDLRG GAQTAQDMAP DSSQTTAPTP ALRPATGTVH 201 250 ENSTTRP00000013036/1-1447 IMDPGCLYYG VQPVGVPGVP DRREGRVICQ ERAEHRLSRQ DLEAREDAGY ENSP00000239440/1-1544 IMDPGCLYYG VQPVGTPGAP DRRESRGVCQ GRAEHRLSRQ DLEAREDAGY ENSBTAP00000021198/1-1519 IMDPGCLYYG VQPVGVPGAP DRREGRGVCQ ERAEHRLSRP DLEAREDAGY bmy_12401T0/1-1444 IMDPGCLYYG VQPVGVPGVP DRREGRVICQ ERAEHR---- ---------- BACU015974/1-1378 IMDPGCLYYG VQPVGVPGVP DRREGRVICQ ERAEHRLSRQ DLEAREDAGY 251 300 ENSTTRP00000013036/1-1447 ASLELPGDST LSLPALDT-E TNDDLISPYA SFSSTADRPT PLLSGWLDKL ENSP00000239440/1-1544 ASLELPGDST LLSPTLETEE TSDDLISPYA SFSFTADRLT PLLSGWLDKL ENSBTAP00000021198/1-1519 ASLELPGDST LSLPTLDT-E TNDDLISPYA SFSSTADRPT PLLSGWLDKL bmy_12401T0/1-1444 ---------- ---------- ---------- ---------- ---------- BACU015974/1-1378 ASLELPGDST LSLPALDT-E TNDDLISPYA SFSSTADRPM PLLSGWLDKL 301 350 ENSTTRP00000013036/1-1447 SPQGNYVFQR RFVQFNGRSL MYFGSDKDPF PKGVIPLTAI EMTRSSKDNK ENSP00000239440/1-1544 SPQGNYVFQR RFVQFNGRSL MYFGSDKDPF PKGVIPLTAI EMTRSSKDNK ENSBTAP00000021198/1-1519 SPQGNYVFQR RFVQFNGRSL MYFGSDKDPF PKGVIPLTAI EMTRSSKDNK bmy_12401T0/1-1444 ----NYVFQR RFVQFNGRSL MYFGSDKDPF PKGVIPLTAI EMTRSSKDNK BACU015974/1-1378 SPQGNYVFQR RFVQFNGRSL MYFGSDKDPF PKGVIPLTAI EMTRSSKDNK 351 400 ENSTTRP00000013036/1-1447 FQVVTGQRVF VFRTESEAQR DTWCSTMQSC LKEQRLLGHP RPPQPPRPLR ENSP00000239440/1-1544 FQVITGQRVF VFRTESEAQR DMWCSTLQSC LKEQRLLGHP RPPQPPRPLR ENSBTAP00000021198/1-1519 FQVITGQRVF VFRTESEAQR DMWCSTLQSC LKEQRLLGHP RPPQPPRPLR bmy_12401T0/1-1444 FQVITGQRVF VFRTESEAQR DTWCSTVQSC LKEQRLLGHP RPPQPPRPLR BACU015974/1-1378 FQVITGQRVF VFRTESEAQR DTWCSTVQSC LKEQRLLGHP RPPQ-PRPLR 401 450 ENSTTRP00000013036/1-1447 TGMLELRGHK AKVFAALSPG ELALYKSEQA FSLGIGICFI ELQGCSVRET ENSP00000239440/1-1544 TGMLELRGHK AKVFAALSPG ELALYKSEQA FSLGIGICFI ELQGCSVRET ENSBTAP00000021198/1-1519 TGMLELRGHK AKVFAALSPG ELALYKSEQA FSLGIGICFI ELQGCSVRET bmy_12401T0/1-1444 TGMLELRGHK AKVFAALSPG ELALYKSEQA FSLGIGICFI ELQGCSVRET BACU015974/1-1378 TGMLELCGHK AKVFAALSPG ELALYKSEQA FSLGIGICFI ELQGCSVRET 451 500 ENSTTRP00000013036/1-1447 KSRSFDLLTP HRCFSFTAES GGARQSWAAA LQEAVTETLS DYEVAEKIWS ENSP00000239440/1-1544 KSRSFDLLTP HRCFSFTAES GGARQSWAAA LQEAVTETLS DYEVAEKIWS ENSBTAP00000021198/1-1519 KSRSFDLLTP HRCFSFTAES GGARQSWAAA LQEAVTETLS DYEVAEKIWS bmy_12401T0/1-1444 KSRSFDLLTP HRCFSFTAES GGARQSWAAA LQEAVTETLS DYEVAEKIWS BACU015974/1-1378 KSRSFDLLTP HRCFSFTAES GGARQSWAAA LQEAVTETLS DYEVAEKIWS 501 550 ENSTTRP00000013036/1-1447 NRANRHCADC EASRPDWAAV NLGVVICKQC AGQHRALGSG ISKVQSLKLD ENSP00000239440/1-1544 NRANRQCADC GSSRPDWAAV NLGVVICKQC AGQHRALGSG ISKVQSLKLD ENSBTAP00000021198/1-1519 NRATGTARTV XIGMPG---- ---------- -------DTS FCHLPLLPVT bmy_12401T0/1-1444 NRANRHCADC EASRPDWAAV NLGVVICKQC AGQHRALGSG ISKVQSLKLD BACU015974/1-1378 NRANRHCADC EASRPDWAAV NLGVVICKQC AGQHRALGSG ISKVQSLKLD 551 600 ENSTTRP00000013036/1-1447 TSVWSNEIVQ LFIVLGNDRA NRFWAGALPP GEGLHPDSTP GPRGEFISRK ENSP00000239440/1-1544 TSVWSNEIVQ LFIVLGNDRA NRFWAGTLPP GEGLHPDATP GPRGEFISRK ENSBTAP00000021198/1-1519 --------LQ LFIVLGNDRA NRFWAGSLPP GEGLHPDTTP GPRGEFISRK bmy_12401T0/1-1444 TSVWSNEIVQ LFIVLGNDRA NRFWAGALPP GEGLHPDTTP GPRGEFISRK BACU015974/1-1378 TSVWSNEIVQ LFIVLGNDRA NRFWAGALPP GEGLHPDTTP GPRGEFISRK 601 650 ENSTTRP00000013036/1-1447 YRLGLFRKPH PQYPDHSQLL QALCAAVAGP NLLKNMTQLL CVEAFEGEEP ENSP00000239440/1-1544 YRLGLFRKPH PQYPDHSQLL QALCAAVARP NLLKNMTQLL CVEAFEGEEP ENSBTAP00000021198/1-1519 YRLGLFRKPH PQYPDHSQLL QALCAAVAGP NLLKNMTQLL CVEAFEGEEP bmy_12401T0/1-1444 YRLGLFRKPH PQYPDHSQLL QALCAAVAGP NLLKNMTQLL CVEAFEGEEP BACU015974/1-1378 YRLGLFRKPH PQYPDHNQLL QALCAAVAGP NLLKNMTQLL CVEAFEGEEP 651 700 ENSTTRP00000013036/1-1447 WSPPALDGSF PGLLPADPCP GVYNEVVVPA TYSSFLYCGP VSNKAGPPPP ENSP00000239440/1-1544 WFPPAPDGSC PGLLPSDPSP GVYNEVVVRA TYSGFLYCSP VSNKAGPSPP ENSBTAP00000021198/1-1519 WTPSALDGSF PSLLPPDPSP GVYNEVVVPA TYSSFLYCGP ISNKAGPPPP bmy_12401T0/1-1444 WSPPALDGSF PGLLPADPSP GVYNEVVVPA TYSSFLYCGP ISNKAGPPPP BACU015974/1-1378 WSPPALDGSF PGLLPADPSP GVYNEVVVPA TYSSFLYCGP ISNKAGPPPP 701 750 ENSTTRP00000013036/1-1447 RRGRDAPLRL WCVLGAALEM FVSESSPEPL NLIQPQDVVC LGVNPPPTDP ENSP00000239440/1-1544 RRGRDAPPRL WCVLGAALEM FASENSPEPL SLIQPQDIVC LGVSPPPTDP ENSBTAP00000021198/1-1519 RRGRDAPPRL WCVLGAALEM FVSESSPEPL HLIQPQDVVC LGVNPPPTDP bmy_12401T0/1-1444 RRGRDGEK-- ----GAK--- ---------- GCEEPQDVVC LGVNPPPTDP BACU015974/1-1378 RRGRDAPPRL WCVLGAALEM FVSESSPEPL NLIQPQDVVC LGVNPPPTDP 751 800 ENSTTRP00000013036/1-1447 GDLDRFPFSF ELVLTGGRIQ HFGTDGAESL EAWTSAVGKX XXXXXXXXXX ENSP00000239440/1-1544 G--DRFPFSF ELILAGGRIQ HFGTDGADSL EAWTSAVGKW FSPLSCHQLL ENSBTAP00000021198/1-1519 GDLDRFPFSF ELILTGGRIQ HFGTDGADSL EAWTSALGKW FSPLSCHQLL bmy_12401T0/1-1444 SDLDRFPFSF ELILTGGRIQ HFGTDGADSL EAWTSAVGKW FSPLSCHQLL BACU015974/1-1378 SDLDRFPFSF ELILTGGRIQ HFGTDGADSL EAWTSAVGKW FSPLSCHQLL 801 850 ENSTTRP00000013036/1-1447 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000239440/1-1544 GPGLLRLGRL WLRSPSHTAP APGLWLSGFG LLRGDHLFLC SAPGPGPPAP ENSBTAP00000021198/1-1519 GPGLLRLGRL WLRSPSHTTL APGLWMSGFG LLRGDHLFLC PASGPGPPAP bmy_12401T0/1-1444 GPGLLRLGRL WLRSPSHTAL APGLWLSGFG LLRGDHLFLC PASGPGPPAP BACU015974/1-1378 GPGLLRLGRL WLRSPSHTAL APGLWLSGFG LLRGDHLFLC PASGPGPPAP 851 900 ENSTTRP00000013036/1-1447 XXXXXXXXXX XXXVVSATDT PDKKEHLVLV ETGRTLYLQA EGRLDFSAWN ENSP00000239440/1-1544 EDMVHLRRLQ EISVVSAADT PDKKEHLVLV ETGRTLYLQG EGRLDFTAWN ENSBTAP00000021198/1-1519 EDMVHLRRLQ EISVVSAADT PDKKEHLVLV ETGRTLYLQA EGRLDFSAWN bmy_12401T0/1-1444 EDMVHLRRLQ EISLLGL--- ---------- ---RTLYLQA EGRLDFSAWN BACU015974/1-1378 EDMVHLRRLQ EISVVSATDT PDKKEHLVLV ETGRTLYLQA EGRLDFSAWN 901 950 ENSTTRP00000013036/1-1447 AAIAGAAGGG GTGLQEQQMS RGDIPIIVDA CISFVTQHGL RLEGVYRKGG ENSP00000239440/1-1544 AAIGGAAGGG GTGLQEQQMS RGDIPIIVDA CISFVTQHGL RLEGVYRKGG ENSBTAP00000021198/1-1519 TAIGGAAGGG GTGLQEQQMS RGDIPIIVDA CISFVTQHGL RLEGVYRKGG bmy_12401T0/1-1444 AAIAGAAGGG GTGLQEQQMS RGDIPIIVDA CISFVTQHGL RLEGVYRKGG BACU015974/1-1378 AAIAGAAGGG GTGLQEQQMS RGDIPIIVDA CISFVTQHGL RLEGVYRKGG 951 1000 ENSTTRP00000013036/1-1447 ARARSLRLLA EFRRDARSVK LRPGEHFVED VTDTLKRFFR ELDDPVTSAR ENSP00000239440/1-1544 ARARSLRLLA EFRRDARSVK LRPGEHFVED VTDTLKRFFR ELDDPVTSAR ENSBTAP00000021198/1-1519 ARARSLKLLA EFRRDARSVK LRPGEHFVED VTDTLKRFFR ELDDPVTSAR bmy_12401T0/1-1444 ARARSLRLLA EFRRDARSVK LRPGEHFVED VTDTLKRFFR ELDDPVTSAR BACU015974/1-1378 ARARSLRLLA EFRRDARSVK LRPGEHFVED VTDTLKRFFR ELDDPVTSAR 1001 1050 ENSTTRP00000013036/1-1447 LLPRWREAAE LPQKNQRLEK YKEVIGCLPR VNRRTLATLI GHLYRXXXXX ENSP00000239440/1-1544 LLPRWREAAE LPQKNQRLEK YKDVIGCLPR VNRRTLATLI GHLYRVQKCA ENSBTAP00000021198/1-1519 LLPRWREAAE LPQKNQRLEK YKEVIGCLPR VNRRTLATLI GHLYRVQKCA bmy_12401T0/1-1444 LLPRWREAAE LPQKNQRLEK YKEVIGCLPR VNRRTLATLI GHLYRVQKCA BACU015974/1-1378 LLPRWREAAE LPQKNQRLEK YKEVIGCLPR VNRRTLATLI GHLYRVQKCA 1051 1100 ENSTTRP00000013036/1-1447 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000239440/1-1544 ALNQMCTRNL ALLFAPSVFQ TDGRGEHEVR VLQELIDGYI SVFDIDSDQV ENSBTAP00000021198/1-1519 SLNQMCTRNL ALLFAPSVFQ TDGRGEHEVR VLQELIDGYI SVFDIDPDQV bmy_12401T0/1-1444 ALNQMCTRNL ALLFAPSVFQ TDGRGEHEVR VLQELIDGYI SVFDIDPDQV BACU015974/1-1378 ALNQMCTRNL ALLFAPSVFQ TDGRGEHEVR VLQELIDGYI SVFDIDPDQV 1101 1150 ENSTTRP00000013036/1-1447 XXXXXXXXXX XXXXXXXLSQ AGDLIMEVFI EQQLPDNCVT LKVSPTLTAE ENSP00000239440/1-1544 AQIDLEVSLI TTWKDVQLSQ AGDLIMEVYI EQQLPDNCVT LKVSPTLTAE ENSBTAP00000021198/1-1519 AQIDLEVSLI TTWKDVQLSQ AGDLIMEVFI EQQLPDNCVT LKVSPTLTAE bmy_12401T0/1-1444 AQIDLEVSLI TTWKDVQLSQ AGDLIMEVFI EQQLPDNCVT LKVSPTLTAE BACU015974/1-1378 AQIDLEVSLI TTWKDVQLSQ AGDLIMEVFI EQQLPDNCVT LKVSPTLTAE 1151 1200 ENSTTRP00000013036/1-1447 ELTNQVLEIR GTAAGMDLWV TFEIRERGEL ERPLHPKERV LEQALQWCQL ENSP00000239440/1-1544 ELTNQVLEMR GTAAGMDLWV TFEIREHGEL ERPLHPKEKV LEQALQWCQL ENSBTAP00000021198/1-1519 ELTNQVLEIR GTAAGTDLWV TFEIREHGEL ERPLHPKERV LEQALQWCQL bmy_12401T0/1-1444 ELTNQVLEIR GTAAGMDLWV TFEIRERGEL ERPLHPKERV LEQALQWCQL BACU015974/1-1378 ELTNQVLEIR GTAAGMDLWV TFEIRERGEL ERPLHPKERV LEQALQWCQL 1201 1250 ENSTTRP00000013036/1-1447 PEPCSASLLL RKVSLAHAGC LFTGIRRESP RVGLLRCREE PPRLLGNRFQ ENSP00000239440/1-1544 PEPCSASLLL KKVPLAQAGC LFTGIRRESP RVGLLRCREE PPRLLGSRFQ ENSBTAP00000021198/1-1519 PEPCSASLLL RKVSLAHAGC LFTGIRRESP RVGLLRCREE PPRLLGNRFQ bmy_12401T0/1-1444 PEPCSASLLL RKVSLAHAGC LFTGIRRESP RVGLLRCREE PPRLLGNRFQ BACU015974/1-1378 PEPCSASLLL RKVSLAHAGC LFTGIRRESP RVGLLRCREE PPRLLGNRFQ 1251 1300 ENSTTRP00000013036/1-1447 ERFFLLRGRC LLLLKEKKSS KPEREWPLEG AKVYLGIRKK FKPPTPWGFT ENSP00000239440/1-1544 ERFFLLRGRC LLLLKEKKSS KPEREWPLEG AKVYLGIRKK LKPPTPWGFT ENSBTAP00000021198/1-1519 ERFFLLRGRC LLLLKEKKSS KPEREWPLED AKVYLGIRKK FKPPTPWGFT bmy_12401T0/1-1444 ERFFLLRGCC LLLLKEKKSS KPEREWPLEG AKVYLGIRKK FKPPTPWGFT BACU015974/1-1378 ERFFLLRGRC LLLLKEKKSS KPEREWPLEG AKVYLGIRKK FKPPTPWGFT 1301 1350 ENSTTRP00000013036/1-1447 LILEKMHLYL SCTDEDEMWD WATSILKAQH DDQQPVVLRR RSSSDLARQK ENSP00000239440/1-1544 LILEKMHLYL SCTDEDEMWD WTTSILKAQH DDQQPVVLRR HSSSDLARQK ENSBTAP00000021198/1-1519 LMLEKMHLYL SCTDEDEMWD WTTSILKAQH DDQQPVVLRR HSSSDLARQK bmy_12401T0/1-1444 LILEKMHLYL SCTDEDEMWD WATSILKAQH DDQQPVVLRR RSSSDLARQK BACU015974/1-1378 LILEKMHLYL SCTDEDEMWD WATSILKAQH DDQQPVVLRR RSSSDLARQK 1351 1400 ENSTTRP00000013036/1-1447 FGTMPLLPIR GDDSGATLLS ANQTLRRLHN RRTLSMFFPM KSSQGSVEEQ ENSP00000239440/1-1544 FGTMPLLPIR GDDSGATLLS ANQTLRRLHN RRTLSMFFPM KSSQGSVEEQ ENSBTAP00000021198/1-1519 FGTMPLLPIR GDDSGATLLS ANQTLRRLHN RRTLSMFFPM KSSQGSVEEQ bmy_12401T0/1-1444 FGTMPLLPIR GDDSGATLLS ANQTLRRLHN RRTLSMFFPM KSSQGSVEEQ BACU015974/1-1378 FGTMPLLPIR GDDSGATLLS ANQTL----- --------PM KSSQGSVEEQ 1401 1450 ENSTTRP00000013036/1-1447 EELEEPVYEE PVYEEVGAFP ELTEDTSTSF SITPERTAKP ETPLASQRSF ENSP00000239440/1-1544 EELEEPVYEE PVYEEVGAFP ELIQDTSTSF STTREWTVKP ENPLTSQKSL ENSBTAP00000021198/1-1519 EELEEPVYEE PVYEEVGAFP ELTEDISTSF STPRERTAKP ETALPSQRSF bmy_12401T0/1-1444 EELEEPVYEE PVYEEVGAFP ELTEDTSTSF SITPEWTAKP ETPLASQRSF BACU015974/1-1378 EELEEPVYEE PVYEEVGAFP ELTEDTSTSF SITPERTAKP ETPLASQRSF 1451 1500 ENSTTRP00000013036/1-1447 DQSPLPKAGP LGWEERPPEP PPGPPSKSSP QSRGSLEEQL LQELSSLILR ENSP00000239440/1-1544 DQPFLSKSST LGQEERPPEP PPGPPSKSSP QARGSLEEQL LQELSSLILR ENSBTAP00000021198/1-1519 DQYLLSKAGP QAWEERPPEP PPGPPSKSSP QTHGSLEEQL LQELSSLILR bmy_12401T0/1-1444 DQSPLSKAGP LGWEERPPEP PPGPPSKSSP QSHGSLEEQL LQELNSLILR BACU015974/1-1378 DQSPLSKAGP LGWEERPPEP PPGPPSKSSP QSHGSLEEQL LQELSSLILR 1501 1550 ENSTTRP00000013036/1-1447 KGETTVGLGS PSQPSSPQPP SPNGLPTHTP GFPTQAPCTS SPSPSQPLT ENSP00000239440/1-1544 KGETTAGLGS PSQPSSPQSP SPTGLPTQTP GFPTQPPCTS SPPSSQPLT ENSBTAP00000021198/1-1519 KGETTTDLGS PSQPSSPQPP SPNGLPTQTP GFPTQTPCTS SLPRSQPLT bmy_12401T0/1-1444 KGETTVGLGS PSQPSSPQPP SPSGLPTQTP GFPTQAPCTS SSPPSQPLT BACU015974/1-1378 KGETTVGLGS PSQPSSPQPP SPSGLPTQTP GFPTQAPCTS SSPPSQPLT