KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:41 2014 Check: 00 .. Name: BACU010494/1-983 Len: 1134 Check: 6217 Weight: 1.00 Name: bmy_00126T0/1-799 Len: 1134 Check: 4876 Weight: 1.00 Name: ENSTTRP00000003873/1-993 Len: 1134 Check: 5679 Weight: 1.00 Name: ENSP00000312942/1-994 Len: 1134 Check: 1198 Weight: 1.00 Name: ENSBTAP00000021257/1-983 Len: 1134 Check: 6137 Weight: 1.00 // 1 50 BACU010494/1-983 MRPAALLLLP SLLALLAHGL SSEAPTVGEE QAPGMEETEG ELTVNPTPEQ bmy_00126T0/1-799 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003873/1-993 MRSADLLLLP SLLALLAHGL SSEAPTVGEE QAPGMEEMDG ELTVNPTPEQ ENSP00000312942/1-994 MRPVALLLLP SLLALLAHGL SLEAPTVGKG QAPGIEETDG ELTAAPTPEQ ENSBTAP00000021257/1-983 MRPAALLLLP SLLALLVHGL SLEAPTEGEG QAPGLEEMDG ELTAAPTPEQ 51 100 BACU010494/1-983 PERGIHFVTT APTLKLLNHH PLLEEFLQEG LEEGEAELRP AQPFRPDPPT bmy_00126T0/1-799 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003873/1-993 PERGIHFVTT APTLKLLNHH PLLEEFLQEG LEEGETELRP AQPFRPDPPT ENSP00000312942/1-994 PERGVHFVTT APTLKLLNHH PLLEEFLQEG LEKGDEELRP ALPFQPDPPA ENSBTAP00000021257/1-983 PEPGVHFVTT APTLKLLNHH PLLEEFLQEG QEK--DELR- -----PDPP- 101 150 BACU010494/1-983 PYTPSPLPRL AKQDSRPVFT SPTPVMVAAP TQPQSREGPW SLESEPPALH bmy_00126T0/1-799 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003873/1-993 PYTPSPLPLL AKQDSRPVFT SPTPAIVAAP TQPQSREGPW SLESEPSALH ENSP00000312942/1-994 PFTPSPLPRL ANQDSRPVFT SPTPAMAAVP TQPQSKEGPW SPESESPMLR ENSBTAP00000021257/1-983 --TASPLPRL ANQDSRPVFT SPTPVMVAAP TQPQSREGPW SLESEPPALR 151 200 BACU010494/1-983 ITAPLPPGPS MAMPTPGPAE SPNTTPPSRA WTLTREGPGD IGRPWAQEVM bmy_00126T0/1-799 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003873/1-993 ITAPLPPGPS MAMPTPGPAE -AHTTPPSXX XXXXXXXXXX XXXXXXXXXX ENSP00000312942/1-994 ITAPLPPGPS MAVPTLGPGE IASTTPPSRA WTPTQEGPGD MGRPWVAEVV ENSBTAP00000021257/1-983 ITVALPPGPG MAVPTPGPGE RPNTPPPSGA WTPTPEGPGD IGRPWAPGVM 201 250 BACU010494/1-983 SQTTGLGIEG TITTSTASGD DEETTTTSTI ITTTITTVQP PGPCSWNFSG bmy_00126T0/1-799 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003873/1-993 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXPCSWNFSG ENSP00000312942/1-994 SQGAGIGIQG TITSSTASGD DEETTTTTTI ITTTITTVQT PGPCSWNFSG ENSBTAP00000021257/1-983 SQTTGLGMEG TVATSTASGD DEETTSTSTI ITTAVTTVQP PGPCSWNFSG 251 300 BACU010494/1-983 PEGSLDSPTA PSSPLDVGLD CFYYISVYPG YGVEIKGWQL G--------- bmy_00126T0/1-799 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003873/1-993 PEGSLDSPTA PSSPLDVGLD CFYYISVYPG YGVEIKVQNI SLREGETITV ENSP00000312942/1-994 PEGSLDSPTD LSSPTDVGLD CFFYISVYPG YGVEIKVQNI SLREGETVTV ENSBTAP00000021257/1-983 PEGSLDSPTA SNSPPDVGLD CFYYISVYPG YGVEIKVQNI SLREGETVTV 301 350 BACU010494/1-983 ---------- ---QAMLCTG ----GKTDET AGTPRRLPTA PSGLGKEGLW bmy_00126T0/1-799 ---------- -------MRG HVIRSPTHQA ALRFQSLPP- PAGPGTFHFY ENSTTRP00000003873/1-993 EGLGGPDPLP LANQSFLLRG HVIRSPTHQA ALRFQSLPP- PAGPGTFHFY ENSP00000312942/1-994 EGLGGPDPLP LANQSFLLRG QVIRSPTHQA ALRFQSLPP- PAGPGTFHFH ENSBTAP00000021257/1-983 EGLGGPDPLP LANQSFLLRG QVIRSPTHQA ALRFQSLPP- PAGPGTFHFH 351 400 BACU010494/1-983 LLPIM----- ----AYGAVT VTSLHPGGSA RFHCATGYQL KGARLLTCLN bmy_00126T0/1-799 YQAYLLSCHF PRRPAYGAVT VTSLHPGGSA RFHCATGYQL KGARLLTCLN ENSTTRP00000003873/1-993 YQAYLLSCRF PRRPAYGAVT VTSLHPGGSA RFHCATGYQL KGARLLTCLN ENSP00000312942/1-994 YQAYLLSCHF PRRPAYGDVT VTSLHPGGSA RFHCATGYQL KGARHLTCLN ENSBTAP00000021257/1-983 YQAYLLSCHF PRRPAYGAVT VTSLHPGGSA RFRCATGYQL KGARLLTCLN 401 450 BACU010494/1-983 ATQPLWDSQE PVCIASCGGV IRNATTGRII SPGFPGNYSI NLTCHWLLEA bmy_00126T0/1-799 ATQPLWDSQE PVCIASCGGV IRNATTGRIV SPGFPGNYSI NLTCHWLLEA ENSTTRP00000003873/1-993 ATQPLWDSQE PVCIGEYPGV IRNATTGRIV SPGFPGNYSI NLTCHWLLEA ENSP00000312942/1-994 ATQPFWDSKE PVCIAACGGV IRNATTGRIV SPGFPGNYSN NLTCHWLLEA ENSBTAP00000021257/1-983 ATQPFWDSQE PVCIAACGGV IRNATTGRIV SPGFPGNYSN NLTCHWLLEA 451 500 BACU010494/1-983 PEGQRLHLHF EKVSLAEDDD RLIIRNGDNV EAPPVYDSYE VEYLPIEGLL bmy_00126T0/1-799 PEGQRLHLHF EKVSLAEDDD RLIIRNGDNV EAPPVYDSYE VEYLPIEGLL ENSTTRP00000003873/1-993 PEGQRLHLHF EKVSLAEDDD RLIIRNGDNV EAPPVYDSYE VEYLPIEGLL ENSP00000312942/1-994 PEGQRLHLHF EKVSLAEDDD RLIIRNGDNV EAPPVYDSYE VEYLPIEGLL ENSBTAP00000021257/1-983 PEGQRLHLHF EKVSLAEDDD RLIIRNGDNV EAPPVYDSYE VEYLPIEGLL 501 550 BACU010494/1-983 SSGRHFFVEL STDSSGAAAG MALRYEAFQQ GHCYEPFVKY GNFSSSAPSY bmy_00126T0/1-799 SSGRHFFVEL STDSSGAAAG MALRYEAFQQ GHCYEPFVKY GNFSSSAPSY ENSTTRP00000003873/1-993 SSGRHFFVEL STDSSGAAAG MALRYEAFQQ GHCYEPFVKY GNFSSSAPSY ENSP00000312942/1-994 SSGKHFFVEL STDSSGAAAG MALRYEAFQQ GHCYEPFVKY GNFSSSTPTY ENSBTAP00000021257/1-983 SSSRHFFVEL STDSSGVAAG MALRYEAFQQ GHCYEPFVKY GNFSSSAPSY 551 600 BACU010494/1-983 PVGTTVEFSC DPGYTLEQGS IIIECVDPHD PQWNETEPAC RAVCSGEITD bmy_00126T0/1-799 PVGTTVEFSC DPGYTLEQGS IIIECVDPHD PQWNETEPAC RAVCSGEITD ENSTTRP00000003873/1-993 PVGTTVEFSC DPGYTLEQGS IIIECVDPHD PQWNETEPAC RAVCSGEITD ENSP00000312942/1-994 PVGTTVEFSC DPGYTLEQGS IIIECVDPHD PQWNETEPAC RAVCSGEITD ENSBTAP00000021257/1-983 PVGTTVEFSC DPGYTLEQGS IIIECVDPHD PQWNETEPAC RAVCSGETTD 601 650 BACU010494/1-983 SAGVVLSPNW PEPYGRGQDC IWGVHVEEDK RIMLDVRVLR IGPGDVLTFY bmy_00126T0/1-799 SAGVVLSPNW PEPYGRGQDC IWGVHVEEDK RIMLDIRVLR IGPGDVLTFY ENSTTRP00000003873/1-993 SAGVVLSPNW PEPYGRGQDC IWGVHVEEDK RIMLDVRVLR IGPGDVLTFY ENSP00000312942/1-994 SAGVVLSPNW PEPYGRGQDC IWGVHVEEDK RIMLDIRVLR IGPGDVLTFY ENSBTAP00000021257/1-983 SAGVVLSPNW PEPYGRGQDC IWGVHVEEDK RIMLDVRVLR IGTGDVLTFY 651 700 BACU010494/1-983 DGDDLTARVL GQYSGPRGHF KLFTSMADVT IQFQSDPGAS VLGYQQGFVI bmy_00126T0/1-799 DGDDLTARVL GQYSGPRGHF KLFTSMADVT IQFQSDPGAS VLGYQQGFVI ENSTTRP00000003873/1-993 DGDDLTARVL GQYSGPRGHF KLFTSMADVT IQFQSDPGAS VLGYQQGFVI ENSP00000312942/1-994 DGDDLTARVL GQYSGPRSHF KLFTSMADVT IQFQSDPGTS VLGYQQGFVI ENSBTAP00000021257/1-983 DGDDLTARVL GQYSGPRGHF KLFTSMADVT IQFQSDPGAS VLGYQQGFVI 701 750 BACU010494/1-983 HFFEVPRNDT CPELPEIPNG WKSPSQPELV HGTVVTYQCY PGYQVVGSSV bmy_00126T0/1-799 HFFEVPRNDT CPELPEIPNG WKSPSQPELV HGTVVTYQCY PGYQVVGSSV ENSTTRP00000003873/1-993 HFFEVPRNDT CPELPEIPNG WKSPSQPELV HGTVVTYQCY PGYQVVGSSV ENSP00000312942/1-994 HFFEVPRNDT CPELPEIPNG WKSPSQPELV HGTVVTYQCY PGYQVVGSSV ENSBTAP00000021257/1-983 HFFEVPRNDT CPELPEIPNG WKSPSQPELV HGTVVTYQCY PGYQVVGSSV 751 800 BACU010494/1-983 LMCQWDLTWS EDLPSCQRVT SCHDPGDVEH SRRLISSPKF PVGATVQYIC bmy_00126T0/1-799 LMCQWDLTWS EDLPSCQRVT SCHDPGDVEH SRRLISSPKF PVGATVQYIC ENSTTRP00000003873/1-993 LMCQWDLTWS EDLPSCQRVT SCHDPGDVEH SRRLISSPKF PVGATVQYIC ENSP00000312942/1-994 LMCQWDLTWS EDLPSCQRVT SCHDPGDVEH SRRLISSPKF PVGATVQYIC ENSBTAP00000021257/1-983 LMCQWDLTWS EDLPSCQRVT SCLDPGDVEH SRRLISSPKF PVGATVQYIC 801 850 BACU010494/1-983 DQGFVLTGSA ILTCHDRQAS SPKWSDRPPK CLLEHLKLCH GLSAPENGAR bmy_00126T0/1-799 DQGFVLTGSA ILTCHDRQAS SPKWSDRPPK CLLEHLKPCH GLSAPENGAR ENSTTRP00000003873/1-993 DQGFVLTGSA ILTCHDRQAS SPKWSDRPPK CLLEHLKPCH GLSAPENGAR ENSP00000312942/1-994 DQGFVLMGSS ILTCHDRQAG SPKWSDRAPK CLLEQLKPCH GLSAPENGAR ENSBTAP00000021257/1-983 DQGFVLTGSA LLTCHDRQAS SPKWSDRAPK CLLEQLKPCH GLSAPENGAR 851 900 BACU010494/1-983 SPEKQLHPAG ATIHFSCAPG YVLKGQASIK CVPGHPSHWS DPPPICRAAS bmy_00126T0/1-799 SPEKQLHPAG ATIHFSCAPG YVLKGQASIK CVPGHPSHWS DPPPICRAAS ENSTTRP00000003873/1-993 SPEKQLHPAG ATIHFSCAPG YVLKGQASIK CVPGHPSHWS DPPPICRAAS ENSP00000312942/1-994 SPEKQLHPAG ATIHFSCAPG YVLKGQASIK CVPGHPSHWS DPPPICRAAS ENSBTAP00000021257/1-983 SPEKRLHPAG ATVHFSCAPG YVLKGQASIK CVPGHPSHWS DPPPICRAAS 901 950 BACU010494/1-983 LDGFYSGRSL DVAKAPAASS TLDAAHIAAA IFLPLVAMAL LVGG------ bmy_00126T0/1-799 LDGFYSGRSL DVAKAPAASS TLDAAHIAAA IFLPLVAMAL LVGGSRGKAP ENSTTRP00000003873/1-993 LDGFYSGRSL DVAKAPAASS TLDAAHIAAA IFLPLVAMAL LVGG------ ENSP00000312942/1-994 LDGFYNSRSL DVAKAPAASS TLDAAHIAAA IFLPLVAMVL LVGG------ ENSBTAP00000021257/1-983 LDGFYSGRSL DVAKVPAASS TLDAAHLAAA IFLPLVAMAL LVGG------ 951 1000 BACU010494/1-983 ---------- ---------V YLYFSRLQGK SPL------- ---------- bmy_00126T0/1-799 CSCPEHDPAL MTASPWSQHL TIRLTRLERR ENMKSPSRWG SLGKPAQPCI ENSTTRP00000003873/1-993 ---------- ---------V YLYFSRLQGK SPL------- ---------- ENSP00000312942/1-994 ---------- ---------V YFYFSRLQGK SSL------- ---------- ENSBTAP00000021257/1-983 ---------- ---------V YLYFCRLQGN SPL------- ---------- 1001 1050 BACU010494/1-983 -------QLP RTRPRPYDR- ---------- ---------- ---------- bmy_00126T0/1-799 TAQQQSSQLP AVPPPPVHTT WEEMPPIPQE VVLFPPAMPA RAYFLGTTAQ ENSTTRP00000003873/1-993 -------QLP RTRPRPYDR- ---------- ---------- ---------- ENSP00000312942/1-994 -------QLP RPRPRPYNR- ---------- ---------- ---------- ENSBTAP00000021257/1-983 -------QLP RTRPRPYDR- ---------- ---------- ---------- 1051 1100 BACU010494/1-983 ---------- ---------- ---------I TVESAFDNPT Y----ETGPI bmy_00126T0/1-799 LGPLLGSKSG ASASRQNTAG AQASRTSILL TLFRALDPPA WNSQAEREHL ENSTTRP00000003873/1-993 ---------- ---------- ---------I TVESAFDNPT Y----ETGSL ENSP00000312942/1-994 ---------- ---------- ---------I TIESAFDNPT Y----ETGSL ENSBTAP00000021257/1-983 ---------- ---------- ---------I TVESAFDNPT Y----ETGSL 1101 1150 BACU010494/1-983 NAYSVLNSND GVDQSKAWLF GHVPMAYFSA P--- bmy_00126T0/1-799 S--------- --------PC DHHPALACST LQQG ENSTTRP00000003873/1-993 S--------- --------FA GDERI----- ---- ENSP00000312942/1-994 S--------- --------FA GDERI----- ---- ENSBTAP00000021257/1-983 S--------- --------FA GDERI----- ----