KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:47 2014 Check: 00 .. Name: ENSP00000261769/1-882 Len: 898 Check: 5112 Weight: 1.00 Name: ENSBTAP00000021272/1-829 Len: 898 Check: 3050 Weight: 1.00 Name: ENSTTRP00000015153/1-882 Len: 898 Check: 8377 Weight: 1.00 Name: bmy_05328T0/1-857 Len: 898 Check: 7308 Weight: 1.00 Name: BACU018135/1-788 Len: 898 Check: 8977 Weight: 1.00 // 1 50 ENSP00000261769/1-882 MGPWSRSLSA LLLLLQVSSW LCQEPEPCHP GFDAESYTFT VPRRHLERGR ENSBTAP00000021272/1-829 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015153/1-882 ---------- ------VSSW LCQEPEPCNP GFGAESYTFT VPRLHLERGR bmy_05328T0/1-857 MGPPCRGLSA LLLLL----- LLQFPNHCD- ---------- ---------- BACU018135/1-788 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000261769/1-882 VLGRVNFEDC TGRQRTAYFS LDTRFKVGTD GVITVKRPLR FHNPQIHFLV ENSBTAP00000021272/1-829 ----VSFEGC AGLPRTVYVS DDTRFKVHTD GVLTVRRPVH LHRPELSFLV ENSTTRP00000015153/1-882 VLGRVSFEGC TGLPKTVYVS DDTRFKVGTD GVVTVKRPLH LHHPEMSFLV bmy_05328T0/1-857 LCPAVSFEGC TGLPRTVYVS DDTRFKVGTD GVVTVKRPLH LHHPEMSFLV BACU018135/1-788 ---------- ---------- ---------- ---------- -----MSFLV 101 150 ENSP00000261769/1-882 YAWDSTYRKF STKVTLNTVG HHHRPPPHQA SVSGIQAELL TFPNSSPGLR ENSBTAP00000021272/1-829 HAWDSTHRKL STKVTLEVSA HHHHHHSHHD SPSGTQTEVL TFPGPHHGLR ENSTTRP00000015153/1-882 HAWDSTRRKL STKVTLKAVV HHHHHHHHHD SPSGTQTQVL TFPSSHHGLR bmy_05328T0/1-857 HAWDSTRRKL STKVTLKAVV HHHRHHHHHD SPSGTQREVV TFPSSHHGLR BACU018135/1-788 HAWDSTRRKL STKVTLKAVV HRHRHHHHHD SPSGTQTEVL TFPSSHHGLR 151 200 ENSP00000261769/1-882 RQKRDWVIPP ISCPENEKGP FPKNLVQIKS NKDKEGKVFY SITGQGADTP ENSBTAP00000021272/1-829 RQKRDWVIPP ISCPENEKGP FPKSLVQIKS NKEKETQVFY SITGQGADTP ENSTTRP00000015153/1-882 RQKRDWVIPP ISCPENEKGP FPKALVQIKS NREKETKVFY SITGQGADAP bmy_05328T0/1-857 RQKRDWVIPP ISCPENEKGP FPKALVQIKS NRDKETQVFY SITGQGANTP BACU018135/1-788 RQKRDWVIPP ISCPENEKGP FPKALVQIKS NRDKETKVFY SITGQGADTP 201 250 ENSP00000261769/1-882 PVGVFIIERE TGWLKVTEPL DRERIATYTL FSHAVSSNGN AVEDPMEILI ENSBTAP00000021272/1-829 PVGVFIIERE TGWLKVTQPL DREQIAKYIL FSHAVSSNGQ AIEEPMEIVI ENSTTRP00000015153/1-882 PLHVFIIERE TGWLKVTEPL DREHIAKYIL FSHAVSSDGQ AIEEPMEIVI bmy_05328T0/1-857 PLHVFIIERE TGWLKVTEPL DREDIAKYIL FSHAVSSNGQ AIEEPMEIVI BACU018135/1-788 PLHVFIIERE TGWLKVTEPL DREDIAKYIL FSHAVSSNGQ AIEEPMEIVI 251 300 ENSP00000261769/1-882 TVTDQNDNKP EFTQEVFKGS VMEGALPGTS VMEVTATDAD DDVNTYNAAI ENSBTAP00000021272/1-829 TVTDQNDNKP QFTQEVFKGS VLEGALPGTS VMQVTATDID DEVNTYNAAI ENSTTRP00000015153/1-882 TVTDQNDNKP EFTQEVFKGS VTEGALPGTS VMEVSATDAD DDVNTYNAAI bmy_05328T0/1-857 TVTDQNDNKP EFTQGVFKGS VMEGALPGTS VMEVSATDAD DDVNTYNAAI BACU018135/1-788 TVTDQNDNKP EFTQTVFKGS VMEGALPGTS VMEVSATDAD DDVNTYNAAI 301 350 ENSP00000261769/1-882 AYTILSQDPE LPDKNMFTIN RNTGVISVVT TGLDRESFPT YTLVVQAADL ENSBTAP00000021272/1-829 GYKILAQDPM LPHNKMFTIN KETGVISVLT TGLDRESFPT YTLMVQAADL ENSTTRP00000015153/1-882 AYTILSQEPT LPHNKMFTIN KDTGVISVLT TGLDRESFPM YTLVVQAADL bmy_05328T0/1-857 AYSILSQDPV LPHNKMFTIN RDTGVISVLT TGLDRESFPT YTLVVQAADL BACU018135/1-788 AYSILSQEPV LPHNKMFTIN RDTGVISVLT TGLDRESFPT YTLVVQAADL 351 400 ENSP00000261769/1-882 QGEGLSTTAT AVITVTDTND NPPIFNPTTY KGQVPENEAN VVITTLKVTD ENSBTAP00000021272/1-829 NGEGLSTTAT AVITVLDTND NAPRFNPTTY VGSVPENEAN VAITTLTVTD ENSTTRP00000015153/1-882 QGEGLSTTAT AVITVNDTND NPPIFNPTTY EGSVPENEAN VVIATLTVTD bmy_05328T0/1-857 QGDGLSTTAT AVITVNDTND NPPIFNPTTY VGSVLENEAN VVITTLKVTD BACU018135/1-788 QGDGLSTTAT AVITVTDTND NPPIFNPTTY VGSVLENEAN VVITTLTVTD 401 450 ENSP00000261769/1-882 ADAPNTPAWE AVYTILNDDG GQFVVTTNPV NNDGILKTAK ---------- ENSBTAP00000021272/1-829 ADDPNTPAWE AVYTVLNDNE KQFIVVTDPV TNEGTLKTAK ---------- ENSTTRP00000015153/1-882 ADVPNTPAWE AVYTILNDNE KQFVVITDPE TNEGILKTAK LARCRNQRSQ bmy_05328T0/1-857 ADVPNTPAWE AVYTILNDNE KQFVVITDPV TNAGILKTAK ---------- BACU018135/1-788 ADVPSTPAWE AVYKILNDNE KQFVVITDPV TNGGILKTAK ---------- 451 500 ENSP00000261769/1-882 -----GLDFE AKQQYILHVA VTNVVPFEVS LTTSTATVTV DVLDVNEAPI ENSBTAP00000021272/1-829 -----GLDFE AKQQYILYVA VTNVAPFEVT LPTSTATVTV DVIDVNEAPI ENSTTRP00000015153/1-882 GPCPLGLDFE AKQQYILYVA VTNVAPFEVT LSTSTATVTV DVMDVNEAPI bmy_05328T0/1-857 -----GLDFE AKQQYILYVT VTNAAPFEVT LSTSTATVTV DVIDVNEAPI BACU018135/1-788 -----GLDFE AKQQYILYVA VTNAVPFEVT LSTSTATVTV DVIDVNEAPI 501 550 ENSP00000261769/1-882 FVPPEKRVEV SEDFGVGQEI TSYTAQEPDT FMEQKITYRI WRDTANWLEI ENSBTAP00000021272/1-829 FVPPQKRVEV PEDFGVGLEI TSYTAREPDT FMEQKITYRI WRDTANWLEI ENSTTRP00000015153/1-882 FMPPQKKVTV PEDFGLGLEI TSYTAQEPDR FMEQKITYRI WRDAANWLEI bmy_05328T0/1-857 FMPPQKKVKV PEDFGLGLEI TSYTAQEPDK FMEQKITYRI WRDAANWLAI BACU018135/1-788 FMPPQKKVKV PEDFGLGLEI TSYTAQEPDK FMEQKITYRI WRDAANWLEI 551 600 ENSP00000261769/1-882 NPDTGAISTR AELDREDFEH VKNSTYTALI IATDNGSPVA TGTGTLLLIL ENSBTAP00000021272/1-829 NPETGAISTR AELDREDVDH VKNSTYTALI IATDNGSPPA TGTGTLLLFL ENSTTRP00000015153/1-882 NPDTGAISTR AELDRENVEH VKNSTYTALI IATDDGSPPA TGTGTLLLFL bmy_05328T0/1-857 NPDTGAISTR AELDRENVEH VKNSTYTALI IATDNGSPPA TGTGTLLLFL BACU018135/1-788 NPDTGAISTR AELDRENVEH VKNSTYMALI IATDNGSPPA TGTGTLLLFL 601 650 ENSP00000261769/1-882 SDVNDNAPIP EPRTIFFCER NPKPQVINII DADLPPNTSP FTAELTHGAS ENSBTAP00000021272/1-829 DDVNDNGPVP EPRTMDFCQR NPEPHIININ DPDLPPNTSP FTAELTHGAS ENSTTRP00000015153/1-882 DDVNDNGPEP DPRSMYFCQR DPQPVIINII DPDLPPNTSP FTAELTHGAS bmy_05328T0/1-857 DDVNDNGPIP EPRNMDFCQR NPQPYIINII DPDLPPNTSP FTAELTHGAS BACU018135/1-788 DDVNDNGPIP EPRNMDFCQR NPQPYIINII DPDLPPNTSP FTAELTHGAS 651 700 ENSP00000261769/1-882 ANWTIQYNDP TQESIILKPK MALEVGDYKI NLKLMDNQNK DQVTTLEVSV ENSBTAP00000021272/1-829 VNWTIEYNDQ ERESLILKPK KTLELGDHKI NLKLIDNQNK DQVTTLDVHV ENSTTRP00000015153/1-882 VNWTIEYNDQ EHESLLFKPK KTLEVGDYKI NLKLIDNQNK DQVTTLDVHV bmy_05328T0/1-857 VNWTIEYNDP EHESLIFKPK KTLEVSDYKI NLKLIDNQNK DQVTTLDVHV BACU018135/1-788 VNWTIEYNDQ EHESLIFKPK KTLEVGDYKI NLKLIDNQNK DQVTTLDVHV 701 750 ENSP00000261769/1-882 CDCEGAAGVC RKAQP-VEAG LQIPAILGIL GGILALLILI LLLLLFLRRR ENSBTAP00000021272/1-829 CDCDGIVSNC RKATAFAEAG LQVPAILGIL GGILAFLILI LLLLLLVRRR ENSTTRP00000015153/1-882 CDCEGVVSNC RKAGPYAEGG LQVPAILGIL GGILAFLILI LLILLLIRRR bmy_05328T0/1-857 CDCEGVVSDC TKVGSYAEAG LRVPAILGIL GGILAFLILI LLLLLLVRRR BACU018135/1-788 CDCEGVVSNC RKAGPYAEAG LQVPAILGIL GGILAFLILI LLLLLLVRRR 751 800 ENSP00000261769/1-882 AVVKEPLLPP EDDTRDNVYY YDEEGGGEED QDFDLSQLHR GLDARPEVTR ENSBTAP00000021272/1-829 RVVKEPLLPP EDDTRDNVYY YDEEGGGEED QDFDLSQLHR GLDARPEVTR ENSTTRP00000015153/1-882 RVVKEPLLPP EEDTRDNIYY YDEEGGGEED QEYDLSQLHR GLEARPEVTR bmy_05328T0/1-857 RVVKEPLLPP EDDTRDNVYS YDEEGGGEED QDYDLSQLHR GLDARPEVTR BACU018135/1-788 RVVKEPLLPP EDDTRDNVYS YDEEGGGEED QDYDLSQLHR GLDARPEVTR 801 850 ENSP00000261769/1-882 NDVAPTLMSV PRYLPRPANP DEIGNFIDEN LKAADTDPTA PPYDSLLVFD ENSBTAP00000021272/1-829 NDVAPTLMSV PQYRPRPANP DEIGNFIDEN LKAADSDPTA PPYDSLLVFD ENSTTRP00000015153/1-882 NDVAPTLLSV PQYRPRPANP DEIGNFIDEN LKAADSDPTA PPYDSLLVFD bmy_05328T0/1-857 NDVAPTLLSV PQYRPRPANP DEIGNFIDEN LKAADSDPTA PPYDSLLVFD BACU018135/1-788 NDVAPTLLSV PQYRPRPANP DEIGNFIDEN LKAADSDPTA PPYDSLLVFD 851 900 ENSP00000261769/1-882 YEGSGSEAAS LSSLNSSESD KDQDYDYLNE WGNRFKKLAD MYGGGEDD ENSBTAP00000021272/1-829 YEGSGSEAAT LSSLNSSESD QDQDYDYLNE WGNRFKKLAD MYGGGEDD ENSTTRP00000015153/1-882 YEGSGSEAAS LSSLNSSESD QDQDYDYLNE WGGRFKKLAD MYGGGEDD bmy_05328T0/1-857 YEGSGSEAAS LSSLNSSESD RDQDYEYLNE WGNRFKKLAD MYGGGEDD BACU018135/1-788 YEGSGSEAAS LSSLNSSESD RDQDYEYLNE WGNRFKKLAD MYGGGEDD