KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:13:48 2014 Check: 00 .. Name: bmy_02969T0/1-540 Len: 726 Check: 7079 Weight: 1.00 Name: ENSP00000384006/1-725 Len: 726 Check: 1729 Weight: 1.00 Name: ENSBTAP00000021288/1-702 Len: 726 Check: 73 Weight: 1.00 Name: ENSTTRP00000005680/1-724 Len: 726 Check: 3887 Weight: 1.00 // 1 50 bmy_02969T0/1-540 MEQSVDSLRV NHNDSEESKT DSQ---HLSC MDSSEPSFGQ DGSPRVLPIT ENSP00000384006/1-725 MEQSNDSLRV NHNDGEESKT SAQVFEHLIC MDSRDSSFGQ NDSPTVLPIT ENSBTAP00000021288/1-702 MEQSVDSLKV NHNDSEESKT DSQ---HLTY MDSSEPSFGQ DGSPRVLPVT ENSTTRP00000005680/1-724 MEQSVDSLRV NHNDSEESKT DSQVFEHLSC MDSSEPSFGQ DGSPRVLPIT 51 100 bmy_02969T0/1-540 TA-VDNSLTS QNIPGPLTQT QTLSAEQFHL VDQNGQPIQY ELQSLGDSNA ENSP00000384006/1-725 TREANNSLIS QNIPGPLTQT QTLSAEQFHL VDQNGQAIQY ELQSLGESNA ENSBTAP00000021288/1-702 TPEEDGSLTS QNIPGPLTQA QILSAEQFHL VDQNGQPVQY ELQSLGDSNA ENSTTRP00000005680/1-724 TA-VDNSLTS QNIPGPLTQT QTLSAEQFHL VDQNGQPIQY ELQSLGDSNE 101 150 bmy_02969T0/1-540 QMMIVASPSE NGQVLRVIPS TQTGTTQVIV PQGQLVDVNS PQDVSEEKPS ENSP00000384006/1-725 QMMIVASPTE NGQVLRVIPP TQTGMAQVII PQGQLVDVNS PRDVPEEKPS ENSBTAP00000021288/1-702 QMMIVASPSE NGQVLRVIPS PQTGMTQVII PQGPLVDENS PQDVSEEKPS ENSTTRP00000005680/1-724 QMMIVASPSE NGQVLRVIPS TQTGTTQVIV PQGQLVDVNS PQDVSEEKPS 151 200 bmy_02969T0/1-540 DRNLPTVRVD SLADNNSSYI LHPQASLTLP KKTVTRILEE PFLAPLQPLS ENSP00000384006/1-725 NRNLPTVRVD TLADNTSNYI LHPQTSFPLP KKSVTGMLEE PLLGPLQPLS ENSBTAP00000021288/1-702 DRNLPAVRVD ALADSNSSYV LHPQASLTLP KKTVTRILEE PLLAPLQSLS ENSTTRP00000005680/1-724 DGNLPTVRVD SLADNNSSYI LHPHASLTLP KKTVTXXXXX XXXXXXXXXX 201 250 bmy_02969T0/1-540 SNTPIWACRL RSCEDI---- ----ITVVAF LSVM------ --YVW----- ENSP00000384006/1-725 SNTPIWACRL RSCEKIGDSY RGYCVSETEL ESVLTFHKQQ TQSVWGTRQS ENSBTAP00000021288/1-702 SNTPIWACRL RSCEKIGDSY RGYCVSETEL ESVLTFHKQQ TQSVWGTRQS ENSTTRP00000005680/1-724 XXXXXXXXXX XXXXKIGDSY RGYCVSETEL ESVLTFHKQQ TQSVWGTRQS 251 300 bmy_02969T0/1-540 ---------- ---------- --------SR AVVMECQYGP RRKGFQLKKI ENSP00000384006/1-725 PSPAKPATRL MWKSQYVPYD GIPFVNAGSR AVVMECQYGP RRKGFQLKKV ENSBTAP00000021288/1-702 PSPAKPATRL MWKSQYVPYD GIPFVNAGSR AVVMECQYGP RRKGFQLKKI ENSTTRP00000005680/1-724 PSPAKPATRL MWKSQYVPYD GIPFVNAGSR AVVMECQYGP RRKGFQLKKI 301 350 bmy_02969T0/1-540 SEQESRSCQL YKATCPARIY IKKVQKFPEY RVPTDPKIDR KIIRTEQEKA ENSP00000384006/1-725 SEQESRSCQL YKATCPARIY IKKVQKFPEY RVPTDPKIDK KIIRMEQEKA ENSBTAP00000021288/1-702 GELENRSCQL YKATCPARIY IKKVQKFPDY RVPTDPKIDR KIIRMEQEKA ENSTTRP00000005680/1-724 SEQESRSCQL YKATCPARIY IKKVQKFPEY RVPTDPKIDR KIIRMEQEKA 351 400 bmy_02969T0/1-540 FNMLKKNLVD AGGVLRWYVQ LPTQQAHQYH ELETPCLPLS PSSFPMSSLE ENSP00000384006/1-725 FNMLKKNLVD AGGVLRWYVQ LPTQQAHQYH ELETPCLTLS PSPFPVSSLE ENSBTAP00000021288/1-702 FNLLKKNLVD AGGVLRWYVQ LPTQQAHQYH ELETPCLPLS SSSFPISSLE ENSTTRP00000005680/1-724 FNMLKKNLVD AGGVLRWYVQ LPTQQAHQYH ELETPCLPLS PSPFPMSSLE 401 450 bmy_02969T0/1-540 EEETAVRDEN CALPSRLHPQ VAHKIQELVS QGIQQVYAVR KQLRKFVERE ENSP00000384006/1-725 EEETAVRDEN CALPSRLHPQ VAHKIQELVS QGIEQVYAVR KQLRKFVERE ENSBTAP00000021288/1-702 EEEAAIRDEN CTLPSRLHPQ VAHKIQELVS QGIEQVYAVR KQLRKFVERE ENSTTRP00000005680/1-724 EEEAAVRDEN CTLPSRLHPQ VAHKIQELVS QGIQQVYAVR KQLRKFVERE 451 500 bmy_02969T0/1-540 LFKPDEVPER HNLSFFPTVN DIKNHIHEVQ KSLRNGDNVY NSEIIPAT-- ENSP00000384006/1-725 LFKPDEVPER HNLSFFPTVN DIKNHIHEVQ KSLRNGDTVY NSEIIPATLQ ENSBTAP00000021288/1-702 LFKPDEVPER HNLSFFPTVN DIRNHIHEVQ KS-RNGDNIC NSEIIPATLQ ENSTTRP00000005680/1-724 LFKPDEIPER HNLSFFPTVN DIKNHIHEVQ KSLRNGDNVY NSEIIPATLQ 501 550 bmy_02969T0/1-540 ---------- ---------- ---GREKDPE IEFGKAK--- -------FTR ENSP00000384006/1-725 WTTDSGNILK ETMTVTFAEG NSPGESITTK VETNQTRGSL SPEPTHLLSS ENSBTAP00000021288/1-702 WTTDSGNILR ETVTVTLAEG NSQGESVSSK LETNQTRNSL SPEPAQLLSS ENSTTRP00000005680/1-724 WTTGSGNILR ETVTVTLAEG NSQGEAISSK VETNQTRGSL SPEPAHLLSS 551 600 bmy_02969T0/1-540 RSNFQQ---- ---------- ---------- ---------- ---------S ENSP00000384006/1-725 LSSFQPKIFT QLQGLQLQPR YTSPDESPAV VSVNNQPSSS PSGLLDTIGS ENSBTAP00000021288/1-702 LSSFQPKIFT HLQGLQLQPR FT-SDGSPAL ISVNNHPSSS PSRLLDSVGS ENSTTRP00000005680/1-724 LSSFQPKIFT QLQGLQLQPR FTSSDGSPAL ISVNNHPSSS PSRLLDSVGS 601 650 bmy_02969T0/1-540 GNKSDKGFFV SRASALA--- ---------- ---------- ---------- ENSP00000384006/1-725 AVMNNNSLLL GQSHSLQRDT CLTQNNSTAS TMGNLPEPDQ NLVAMDELVE ENSBTAP00000021288/1-702 VVMNNNSLLL GQTHCLQTDT PLTPNSSISS TMSNLPGPDQ NLVAVDQLVE ENSTTRP00000005680/1-724 AVMNNNSLLL GQTHCLQTDT CLTQNNSISS TMGNLPGPDQ NLVAVDQLVE 651 700 bmy_02969T0/1-540 ---------- ---------- -VLTFFISAK NIHTTTVEES PEGTISVNQV ENSP00000384006/1-725 VGDVEDTGNL EGTVHRILLG DVQTIPIQII DNHSALIEEN PESTISVSQV ENSBTAP00000021288/1-702 VEDVEDTETL EGNVHRILLG NVQTIPIQII DSPPVL---S NFGSI----- ENSTTRP00000005680/1-724 VGDVEDTENL EGNVHRILLG NVQTIPIQII DSHPALIEES PEGTISVNQV 701 750 bmy_02969T0/1-540 KQEPKEPALS MEAKKNLDCK KLSAT- ENSP00000384006/1-725 KQEPKEPALS MEAKKTVDYK KLSAT- ENSBTAP00000021288/1-702 ---LKEPIF- -------DCF GGPIKI ENSTTRP00000005680/1-724 KQEPKEPALS MEAKKKMDCK KLSAT-