KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:02 2014 Check: 00 .. Name: ENSP00000374014/1-377 Len: 875 Check: 7295 Weight: 1.00 Name: ENSBTAP00000021354/1-376 Len: 875 Check: 8534 Weight: 1.00 Name: ENSTTRP00000009353/1-368 Len: 875 Check: 9063 Weight: 1.00 Name: bmy_02657T0/1-344 Len: 875 Check: 4967 Weight: 1.00 Name: BACU016633/1-874 Len: 875 Check: 7439 Weight: 1.00 // 1 50 ENSP00000374014/1-377 MDIPPLAGKI AALSLSALPV SYALNHVSAL SHPLWVALMS ALILGLLFVA ENSBTAP00000021354/1-376 MDIPPLAGKI AVLSLGALPL SFALNYVSLL SYPLGVVLMS TLILGLLSLA ENSTTRP00000009353/1-368 MDIPPLAGKV AVLSLGALPL SYALNHVSAL SYPLGVMWMS ALILGLLFLA bmy_02657T0/1-344 MDIPPLAGKV AVLSLGALPL SYALNHVSAL S-PLGVVWMS ALILGLLFLA BACU016633/1-874 MDIPPLAGKV AVLSLGALPL SYALNHVSAL SYPLGVVWMS ALILGLLFLA 51 100 ENSP00000374014/1-377 VYSLSHGEVS YDPLYAVFAV FAFTSVVDLI IALQEDSYVV GFMEFYTKEG ENSBTAP00000021354/1-376 IYSLSRSDIY YDPLYAVFAV FAFTSVVDLL IALQEDGYMA GFMAFYTKEG ENSTTRP00000009353/1-368 IYSLSRSDIY YDPLYAVFAV FSFTSVVDLL IALEEDGYMG SFMAFYTKEG bmy_02657T0/1-344 IYSLSRSDIY YDPLYAVFAV FSFTSVVDLL IALQEDGYMG SFMAFYTKEG BACU016633/1-874 IYSLSRSDIY YDPLYAVFAV FSFTSVVDLL IALQEDGYMG SFMAFYTKEG 101 150 ENSP00000374014/1-377 EPYLRTAHGV FICYWDGTVH YLLYLAMAGA ICRRKRYRNF GLYWLGSFAM ENSBTAP00000021354/1-376 EPYLRTAHGV FICYWDGIVH YLLYLAMTGA IRKRKSYRNF GLYWLGSFIM ENSTTRP00000009353/1-368 EPYLRTAHGV FICYWDGTVH YLLYLAMAGA IRKRKRYRNL ALYWLGSFVM bmy_02657T0/1-344 DPYLRTAHGV FICYWDGIVH YLLYLAMAGA IRKRKRYRNL GLYWLGSFVM BACU016633/1-874 EPYLRTAHGV FICYWDGIVH YLLYLAMAGA IRKRKRYRNL GLYWLGSFVM 151 200 ENSP00000374014/1-377 SILVFLTGNI LGKYSSEIRP AFFLTIPYLL VPCWAGMKVF SQPRALTRCT ENSBTAP00000021354/1-376 SILVFLPGNI LGKYSSEIRP TFFLTIPFLL VPCWAGLRVF NQTQVPTCCT ENSTTRP00000009353/1-368 SILVFLPGNI LGKYNSEIRP SFFLTIPYLL VPCWAGLRVF NQTQAPSCCT bmy_02657T0/1-344 SILVFLPGNI LGKYNSEIRP SFFLTIPYLL VPCWAGLRVF NQTQAPSCCT BACU016633/1-874 SILVFLPGNI LGKYNSEIRP SFFLTIPYLL VPCWAGLRVF NQTQAPSCCT 201 250 ENSP00000374014/1-377 ANMVQEEQRK GLLQRPADLA LVIYLILAGF FTLFRGLVVL DCPTDACFVY ENSBTAP00000021354/1-376 PNMVEEDQRK GLLRRPVDLA LIIYLIFAAF FTLFRGLVVL DCPMDACFVY ENSTTRP00000009353/1-368 PNMXXXXQRK GPLRRPVDLA LIILIAV--- --FTRGLVVL DCPMDACFVY bmy_02657T0/1-344 PNMVEEEQRK GLLQRPVDLA LIIYLIFAAF FTFFRGL--- ---------- BACU016633/1-874 PNMVEEEQRK GLLQRPVDLA LIIYLIFAAF FTFFRGLVVL DCPMDACFVY 251 300 ENSP00000374014/1-377 IYQYEPYLRD PVAYPKVQML MYMFYVLPFC GLAAYALTFP GCSWLPDWAL ENSBTAP00000021354/1-376 IYQYEPYLRD PVTYPKVQML VNMFYVLPFY GLAIYALIFP GCSWLPDWAL ENSTTRP00000009353/1-368 IYQYEPYLRD PVAYPKVQML VNMFYVLPFY GLAIYALIFP GCSWLPDWTL bmy_02657T0/1-344 ---------- --------ML VNMFYVLPFY GLAIYALIFP GCSWLPDWTL BACU016633/1-874 IYQYEPYLRD PVAYPKVQML VNMFYVLPFY GLAIYALIFP GCSWLPDWTL 301 350 ENSP00000374014/1-377 VFAGGIGQAQ FSHMGASMHL RTPFTYRVPE DTWGCFFVCN LLYALG---- ENSBTAP00000021354/1-376 VFAGAIGQAQ FSHMGASMHL RTPFTYRVPE DAWASFFVCN LLYALG---- ENSTTRP00000009353/1-368 VFAGAIGQAQ FSHMGASMHL RTPFTYRLPE DAWASFFVCN LLYALG---- bmy_02657T0/1-344 VFAGAIGQAQ FSHMGASMHL RTPFTYRVPE DAWASFFVCN LLYALG---- BACU016633/1-874 VFAGAIGQAQ FSHMGASMHL RTPFTYRVPE DAWASFFMCN LLQTPGLRRL 351 400 ENSP00000374014/1-377 ---------- ---------- ----PH---- ---------- ---------- ENSBTAP00000021354/1-376 ---------- ---------- ----PH---- ---------- ---------- ENSTTRP00000009353/1-368 ---------- ---------- ----PH---- ---------- ---------- bmy_02657T0/1-344 ---------- ---------- ----PH---- ---------- ---------- BACU016633/1-874 QGPAQSFLGV WGAQSRHIGA AGRGPHRQDE GESGSVVVQT APGQVVSHRG 401 450 ENSP00000374014/1-377 ---LLAYRCL QWPA------ ---------- ---------- ---------- ENSBTAP00000021354/1-376 ---LLAFRCL WRPA------ ---------- ---------- ---------- ENSTTRP00000009353/1-368 ----LLYRCL WPAS------ ---------- ---------- ---------- bmy_02657T0/1-344 ---LLACRCL WSPA------ ---------- ---------- ---------- BACU016633/1-874 GTIVLPCRSH YEAAAHGHDS VRLKWTKVVD PLAFADVFVA LGAQHRAFGS 451 500 ENSP00000374014/1-377 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021354/1-376 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009353/1-368 ---------- ---------- ---------- ---------- ---------- bmy_02657T0/1-344 ---------- ---------- ---------- ---------- ---------- BACU016633/1-874 YRGRAELQGD SHRGGTIALP CRYHYEAAAH GHDSVRLKWT KVVDPLAFAD 501 550 ENSP00000374014/1-377 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021354/1-376 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009353/1-368 ---------- ---------- ---------- ---------- ---------- bmy_02657T0/1-344 ---------- ---------- ---------- ---------- ---------- BACU016633/1-874 VFVALGAQHR AFGSYRGRAE LQGDGPGDAS LVLRNVTLQD YGRYECEVTN 551 600 ENSP00000374014/1-377 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021354/1-376 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009353/1-368 ---------- ---------- ---------- ---------- ---------- bmy_02657T0/1-344 ---------- ---------- ---------- ---------- ---------- BACU016633/1-874 ELEDDTGMVK LDLEGVVFPY HPRGGRYKLT FTEAQRACAE QDGILASAEQ 601 650 ENSP00000374014/1-377 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021354/1-376 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009353/1-368 ---------- ---------- ---------- ---------- ---------- bmy_02657T0/1-344 ---------- ---------- ---------- ---------- ---------- BACU016633/1-874 LHAAWRDGLD WCNAGWLRDG SVQYPVSQPR EPCGGLGGAG SAGAGGGASG 651 700 ENSP00000374014/1-377 ---------- ---------- --------FF HQPP------ ---------- ENSBTAP00000021354/1-376 ---------- ---------- --------FF LRPP------ ---------- ENSTTRP00000009353/1-368 ---------- ---------- ---------- LRPL------ ---------- bmy_02657T0/1-344 ---------- ---------- --------FF LRPL------ ---------- BACU016633/1-874 GVRNYGYRQN AEELYDAFCF TSNLPGRVFF LKPLRPVPFA GAARACAARG 701 750 ENSP00000374014/1-377 ---------- ---------- ---------- -PSDPLALHK KQH------- ENSBTAP00000021354/1-376 ---------- ---------- ---------- -PGPP-AHHE KQH------- ENSTTRP00000009353/1-368 ---------- ---------- ---------- -PGPP-AHHE KQH------- bmy_02657T0/1-344 ---------- ---------- ---------- -PGPP-AHHE KQH------- BACU016633/1-874 AAVAKVGQLF AAWKLQLLDR CTAGWLGGGK APAPP-LYXX XXXXXXXXXX 751 800 ENSP00000374014/1-377 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021354/1-376 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009353/1-368 ---------- ---------- ---------- ---------- ---------- bmy_02657T0/1-344 ---------- ---------- ---------- ---------- ---------- BACU016633/1-874 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 801 850 ENSP00000374014/1-377 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021354/1-376 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009353/1-368 ---------- ---------- ---------- ---------- ---------- bmy_02657T0/1-344 ---------- ---------- ---------- ---------- ---------- BACU016633/1-874 XXXXXXXXXP RCGGRRPGVR SLGFPDATRR LFGVYCYRAP GAPDPAPGGW 851 900 ENSP00000374014/1-377 ---------- ---------- ----- ENSBTAP00000021354/1-376 ---------- ---------- ----- ENSTTRP00000009353/1-368 ---------- ---------- ----- bmy_02657T0/1-344 ---------- ---------- ----- BACU016633/1-874 GWGWAGGGGG AGGARDPAAW TPLRV