KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:04 2014 Check: 00 .. Name: ENSTTRP00000013273/1-813 Len: 991 Check: 3284 Weight: 1.00 Name: ENSP00000330572/1-823 Len: 991 Check: 8119 Weight: 1.00 Name: bmy_14610T0/1-978 Len: 991 Check: 9283 Weight: 1.00 Name: ENSBTAP00000021360/1-821 Len: 991 Check: 1265 Weight: 1.00 Name: BACU013521/1-353 Len: 991 Check: 5166 Weight: 1.00 // 1 50 ENSTTRP00000013273/1-813 MADRAEMFSL STFHSLSPPG CRPPQDISLE EFDDEDLSEI TDDCGLGLSY ENSP00000330572/1-823 MADRAEMFSL STFHSLSPPG CRPPQDISLE EFDDEDLSEI TDDCGLGLSY bmy_14610T0/1-978 MADRAEMFSL STFHSLSPPG CRPPQDISLE EFDDEDLSEI TDDCGLGLSY ENSBTAP00000021360/1-821 MADRAEMFSL STFHSLSPPG CRPPQDISLE EFDDEDLSEI TDDCGLGLSY BACU013521/1-353 MADRAEMFSL STFHSLSPPG CRPPQDISLE EFDDEDLSEI TDDCGLGLSY 51 100 ENSTTRP00000013273/1-813 DSDHCEKDSL SLGRSEQPHP ICSFQDDFQE FEMIDDN--- ----EEEEDD ENSP00000330572/1-823 DSDHCEKDSL SLGRSEQPHP ICSFQDDFQE FEMIDDN--- ----EEEDDE bmy_14610T0/1-978 DSDHCEKDGL SLGRSEQPHP ICSFQDDFQE FEMIDDNEEE EEEEEEEEEE ENSBTAP00000021360/1-821 DSDHCEKDSL ALGRSEQPHP ICSFQDDFQE FEMIDDN--- -EEEEEEEEE BACU013521/1-353 DSDHCEKN-- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000013273/1-813 EEEEEEEEEE AEGE-VEGGG PGSAARARQP LIPSPSLEEP HKHRPTTLHL ENSP00000330572/1-823 DEEEEEEEEE GDGEGQEGGD PGSEAPAPGP LIPSPSVEEP HKHRPTTLRL bmy_14610T0/1-978 EEEEEEEEEE EEGEEAEGEG KEGGGPAREP LIPSPSLEEP HKHRPTTLHL ENSBTAP00000021360/1-821 EDEEEEDEEE GEGEGKEGGG PGSETPAPEP LIPSPSLEEP HKHRPTTLHL BACU013521/1-353 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000013273/1-813 TTLGA----- ---------- ---------- ---------- ---------- ENSP00000330572/1-823 TTLGA----- ---------- ---------- ---------- ---------- bmy_14610T0/1-978 TTLGAQVSEH PAPQLTLVPS IWDSGPRGGL SPHLPPRAGT PPSAVLSSPR ENSBTAP00000021360/1-821 TTLGA----- ---------- ---------- ---------- ---------- BACU013521/1-353 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000013273/1-813 -----QDSLN NNGGFAPGPP ASRQETVLCP PAQEPLR--- ---------- ENSP00000330572/1-823 -----QDSLN NNGGFDLVRP ASWQETALCS PAPEALR--- ---------- bmy_14610T0/1-978 PSPPPQDSLN NNGGFAPGPP ASRQETVLCP PAQEPLRGEL GGGGRGYTGG ENSBTAP00000021360/1-821 -----QDSLN NNGGFAPGPL ASRQETALCP AVQEPVR--- ---------- BACU013521/1-353 ---------- ---------- ---------- -ISEQL---- ---------- 251 300 ENSTTRP00000013273/1-813 ---------- --------EP PAPLPPTDRS PCGAQSPVHP GCDSEGNQPA ENSP00000330572/1-823 ---------- --------EL PGPLPATDTG PGGAQSPVRP GCDCEGNRPA bmy_14610T0/1-978 EGGRSGGGGL ADPTPCSAEP PAPLPPTDRS PCGAQSPVHP GCDSEGNQPA ENSBTAP00000021360/1-821 ---------- --------EP PAPLPPTDTG PCGAQPPVRP GCDSEGNQPA BACU013521/1-353 ---------- ---------- ---------- PCG------- ---------- 301 350 ENSTTRP00000013273/1-813 RPLAPGGASP SSDPGIEADL GSGSSGGRGG RRSSQELSSP GSDSEDAGGA ENSP00000330572/1-823 EPPAPGGTSP SSDPGIEADL RSRSSGGRGG RRSSQELSSP GSDSEDAGG- bmy_14610T0/1-978 GPLAPGEASP SSDPGIEADL GSGSSGGRGG RRSSQELSSP GSDSEDAGGA ENSBTAP00000021360/1-821 GPVAPGGASP SSDPGIEADL GSGSSGGRGG RRSSQDLSSP GSDYEDVGGA BACU013521/1-353 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000013273/1-813 RLGRMISSIS ETELERSSDD -GGSSSGRSS HLTNSIEEAS SPAS--EPEP ENSP00000330572/1-823 RLGRMISSIS ETELELSSDG -GSSSSGRSS HLTNSIEEAS SPAS----EP bmy_14610T0/1-978 RLGRMISSIS ETELERSSDD GGGSSSGRSS HLTNSIEEAS SPAS--EPEP ENSBTAP00000021360/1-821 RLGRMISSIS ETELERSSDD -GSSSSGRSS HLTNSIEEAS SPASEPEPEP BACU013521/1-353 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000013273/1-813 EPPCEPPRRP AFLPVGPDDT NSEYESGSES EPDLSEDADS PWLLSNLVSR ENSP00000330572/1-823 EPPREPPRRP AFLPVGPDDT NSEYESGSES EPDLSEDADS PWLLSNLVSR bmy_14610T0/1-978 EPPSEPPRRP AFLPVGPDDT NSEYESGSES EPDLSEDADS PWLLSNLVSR ENSBTAP00000021360/1-821 EPPREPPRRP AFLPVGPEDT NSEYESGSES EPDLSEDADS PWLLSNLVSR BACU013521/1-353 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000013273/1-813 MISEGSSPIR CPGQCLSPAP RPAGECASPV GEA------P EAAAGP-GVE ENSP00000330572/1-823 MISEGSSPIR CPGQCLSPAP RPPGEPVSPA GGAAQDSQDP EAAAGPGGVE bmy_14610T0/1-978 MISEGSSPIR CPGQCLSPAP RPAGEGVSPA GEA------P GAAAGP-GVE ENSBTAP00000021360/1-821 MISEGSSPIR CPGQCLSPSP RSAGEPASPA GEA------- LAAAAPGSVE BACU013521/1-353 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000013273/1-813 LVDMETLCGP PPPEPSAPRP GPAQPGPCLF LSNPTRDTIT PLWAAPGRPA ENSP00000330572/1-823 LVDMETLCAP PPPAPAAPRP GPAQPGPCLF LSNPTRDTIT PLWAAPGRAA bmy_14610T0/1-978 LVDMETLCGP PPPEPSAPRP GPAQPGPCLF LSNPTRDTIT PLWAAPGRPA ENSBTAP00000021360/1-821 LVDMETLCGP PPPAPPAPRP GPAQPGPCLF LSNPTRDTIT PLWAAPGRPA BACU013521/1-353 ---------- ---------- ---------- ---------- KFWGLPG--- 551 600 ENSTTRP00000013273/1-813 RPGRACSAAC S-EEDDEDEE EEDEAEPEAA PLGGRGTGA- AP-DASLVYD ENSP00000330572/1-823 RPGRACSAAC SEEEDEEDDE EEEDAEDSAG SPGGRGTGPS APRDASLVYD bmy_14610T0/1-978 RPGRACSAAC S-EEDDEDEE EEDEAEPKAG PPGGRGTGP- AALDASLVYD ENSBTAP00000021360/1-821 RPGRACSAAC SDEDDDEDEE EEDEAEAKAA PPGGRGAGP- AALDASLVYD BACU013521/1-353 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000013273/1-813 AVKYTLVVDE HTQLELVSLR RCARLGEDS- GDSGGEACEY DAGAAPLGXX ENSP00000330572/1-823 AVKYTLVVDE HTQLELVSLR RCAGLGHDSE EDSGGEASEE EAGAALLGGG bmy_14610T0/1-978 AVKYTLVVDE HTQLELVSLQ RCAGLGDDS- EDSGGEASEE EAGAALLGRD ENSBTAP00000021360/1-821 AVKYTLVVDE HTQLELVSLR RCAGLGEDS- EDSGGEASEE EAGAVLLGGD BACU013521/1-353 ---------- ---------- ---------- ------AWEE SRTAALLGRE 651 700 ENSTTRP00000013273/1-813 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXTESFGLFS CLVNGEEREQ ENSP00000330572/1-823 QVSGDTSPDS PDLTFSKKFL NVFVNSTSRS SSTESFGLFS CLVNGEEREQ bmy_14610T0/1-978 QGPGDASPGS PDLTFSRKFL NVFVNSTSRS SSTESFGLFS CLVNGEEREQ ENSBTAP00000021360/1-821 QGPGDASPDS PDLTFSKKFL NVFVNSTSRS SSTESFGLFS CLVNGEEREQ BACU013521/1-353 QGPGDASPGS PDLTFSRKFL NVFVNSTSRS SSTESFGLFS CLVNGEEREQ 701 750 ENSTTRP00000013273/1-813 THRAVFRFIP RHPDELELDV DDPVLVEAEE DDFWFRGFNM RTGERGVFPA ENSP00000330572/1-823 THRAVFRFIP RHPDELELDV DDPVLVEAEE DDFWFRGFNM RTGERGVFPA bmy_14610T0/1-978 THRAVFRFIP RHPDELELDV DDPVLVEAEE DDFWFRGFNM RTGERGVFPA ENSBTAP00000021360/1-821 THRAVFRFIP RHPDELELDV DDPVLVEAEE DDFWFRGFNM RTGERGVFPA BACU013521/1-353 THRAVFRFIP RHPDELELDV DDPVLVEAEE DDFWFRGFNM RTGERGVFPA 751 800 ENSTTRP00000013273/1-813 FYAHAVPGPA KDLLGSKRGP CWVERFDVQF LGSVEVPCHQ GNGILCAAMQ ENSP00000330572/1-823 FYAHAVPGPA KDLLGSKRSP CWVERFDVQF LGSVEVPCHQ GNGILCAAMQ bmy_14610T0/1-978 FYAHAVPGPA KDLLGSKRGP CWVERFDVQF LGSVEVPCHQ GNGILCAAMQ ENSBTAP00000021360/1-821 FYAHAVPGPA KDLLGSKRGP CWVERFDVQF LGSVEVPCHQ GNGILCAAMQ BACU013521/1-353 FYAHAVPGPA KDLLGSKRGP CWVERFDVQF LGSVEVPCHQ GNGILCAAMQ 801 850 ENSTTRP00000013273/1-813 KIATARKLTV HLRPPASCDL EISLRGVKLS LS-GGPEFQH CSHFFQMKNI ENSP00000330572/1-823 KIATARKLTV HLRPPASCDL EISLRGVKLS LSGGGPEFQR CSHFFQMKNI bmy_14610T0/1-978 KIATARKLTV HLRPPASCDL EISLRGVKLS LS-GGPEFQH CSHFFQMKNI ENSBTAP00000021360/1-821 KIATARKLTV HLRPPASCDL EISLRGVKLS LS-GGPEFQR CSHFFQMKNI BACU013521/1-353 KIATARKLTV HLRPPASCDL EISLRGVKLS LS-GGPEFQH CSHFFQMKNI 851 900 ENSTTRP00000013273/1-813 SFCGCHPRNS CYFGFITKHP LLSRFACHVF VSQESMRPVA QSVGRAFLEY ENSP00000330572/1-823 SFCGCHPRNS CYFGFITKHP LLSRFACHVF VSQESMRPVA QSVGRAFLEY bmy_14610T0/1-978 SFCGCHPRNS CYFGFITKHP LLSRFACHVF VSQESMRPVA QSVGRAFLEY ENSBTAP00000021360/1-821 SFCGCHPRNS CYFGFITKHP LLSRFACHVF VSQESMRPVA QSVGRAFLEY BACU013521/1-353 SFCGCHPRNS CYFGFITKHP LLSRFACHVF VSQESMRPVA QSVGRAFLEY 901 950 ENSTTRP00000013273/1-813 YQRHLEYACP TEDIYLE--- ---------- ---------- ---------- ENSP00000330572/1-823 YQEHLAYACP TEDIYLE--- ---------- ---------- ---------- bmy_14610T0/1-978 YQHHLEYACP TXXXXXXXXX XXXXXXXXXX XXXXXXGRLG LGRLPRPPRL ENSBTAP00000021360/1-821 YQQHLEYACP TEDIYLE--- ---------- ---------- ---------- BACU013521/1-353 YQRHLEYACP TEDIYLE--- ---------- ---------- ---------- 951 1000 ENSTTRP00000013273/1-813 ---------- ---------- ---------- ---------- - ENSP00000330572/1-823 ---------- ---------- ---------- ---------- - bmy_14610T0/1-978 WQGLDWGHMG PDIRRVSGCA GNSPPCSPGA AEEWSLHLCY P ENSBTAP00000021360/1-821 ---------- ---------- ---------- ---------- - BACU013521/1-353 ---------- ---------- ---------- ---------- -