KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:06 2014 Check: 00 .. Name: ENSTTRP00000000702/1-1007 Len: 1016 Check: 7163 Weight: 1.00 Name: ENSP00000304078/1-1011 Len: 1016 Check: 8077 Weight: 1.00 Name: ENSBTAP00000021370/1-1014 Len: 1016 Check: 8869 Weight: 1.00 Name: bmy_21851T0/1-859 Len: 1016 Check: 7512 Weight: 1.00 Name: BACU012246/1-439 Len: 1016 Check: 6297 Weight: 1.00 // 1 50 ENSTTRP00000000702/1-1007 MENSSMLSSL NDECKLDNYI EPHYKEWYRV AVDTLIEQGL DAYQEFLAKE ENSP00000304078/1-1011 METSSMLSSL NDECKSDNYI EPHYKEWYRV AIDILIEHGL EAYQEFLVQE ENSBTAP00000021370/1-1014 MESSSMLSSL NDECKSDNYI EPHYKEWYRV AVDTLIEHGL DAYKEFLAKE bmy_21851T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU012246/1-439 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000702/1-1007 RVSDFLAEEE INYILKNVQK VAQSTAYGTD NSCDDTSSSG TYWPVESDVE ENSP00000304078/1-1011 RVSDFLAEEE INYILKNVQK VAQSTAHGTD DSCDDTLSSG TYWPVESDVE ENSBTAP00000021370/1-1014 RVSDFLAEEE INYILNNVQK VAQSTSHGPD NSCDDASSSG TYWPVESDVE bmy_21851T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU012246/1-439 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000000702/1-1007 APNLELGWPY VMPGLVRGTQ IDLLFHPPRA QLFTIKETIR KMIKEARKVI ENSP00000304078/1-1011 APNLDLGWPY VMPGLLGGTH IDLLFHPPRA HLLTIKETIR KMIKEARKVI ENSBTAP00000021370/1-1014 APNLDLGWPY VMPGLLGGTH IELLFHPPRA QLLTIKETVR KMIKEARKVI bmy_21851T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU012246/1-439 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000000702/1-1007 ALVMDIFTDV DIFKEIVEAS TRGISVYILL DESNFNHFLS MTEKQGCQVQ ENSP00000304078/1-1011 ALVMDIFTDV DIFKEIVEAS TRGVSVYILL DESNFNHFLN MTEKQGCSVQ ENSBTAP00000021370/1-1014 ALAMDIFTDV DIFKEIVEAS TRGISVYILL DESKFSHFLS MTEKQGCQVQ bmy_21851T0/1-859 ---MDIFTDV DIFKEIVEAS TRRISVYILL DESNFNHFLC MTEKQGCQVQ BACU012246/1-439 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000000702/1-1007 RLRNIRVRTV KGQDYLSKTG AKFHGKMEQK FLLIDCQKVM YGSYSYMWSF ENSP00000304078/1-1011 RLRNIRVRTV KGQDYLSKTG AKFHGKMEQK FLLVDCQKVM YGSYSYMWSF ENSBTAP00000021370/1-1014 RLRNIRVRTV KGQDYLSKTG AKFHGKMEQK FLLVDCQKVM FGSYSYMWSF bmy_21851T0/1-859 RLRNIRVRTV KGQDYLSKTG AKFHGKMEQK FLLIDCQKVM YGSYSYMWSF BACU012246/1-439 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000000702/1-1007 EKAHLSMVQI ITGQLVESFD EEFRTLYARS SVPSSFAWEE SARVKHSKAL ENSP00000304078/1-1011 EKAHLSMVQI ITGQLVESFD EEFRTLYARS CVPSSFAQEE SARVKHGKAL ENSBTAP00000021370/1-1014 EKAHLSMVQV ITGQLVESFD EEFRTLYARS CVPSSFAPEE SVRVNRGKAL bmy_21851T0/1-859 EKAHLSMVQI ITGQLVESFD EEFRTLYARS CVPSSFAREE SARVKHNKAL BACU012246/1-439 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000000702/1-1007 WENGIYQHSV SSLASISSQR NLFGTQDKIH KLDSSYFKNR GIYTLNERDR ENSP00000304078/1-1011 WENGTYQHSV SSLASVSSQR NLFGRQDKIH KLDSSYFKNR GIYTLNEHDK ENSBTAP00000021370/1-1014 WENGTYQRSV SSLASVSSQR NLFGRQDSIH KLDSSYFKNR GIYTRNEHDK bmy_21851T0/1-859 WENGTFQRSV SSLASISSQR NLFGRQDKIH KLDSSYFRNR GIYTLNERDK BACU012246/1-439 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000000702/1-1007 YNIR-HAYRP HCVSNFNDP- -IRQHQHSQI NENWKRHSYV GEQPETAPYL ENSP00000304078/1-1011 YNIRSHGYKP HFVPNFNGPN AIRQFQPNQI NENWKRHSYA GEQPETVPYL ENSBTAP00000021370/1-1014 YNIRNHTYKP HFVPNFNGP- -IRQHQHSQL NENWKRHSYA GEQPETTPYL bmy_21851T0/1-859 YSIRNHAYKP HFVPNFNGP- -IHQHQHSQI NENWKRHSYA GEQPETTPYL BACU012246/1-439 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000000702/1-1007 LLHRALNRTV NAPYNWKRPS DSFSVASSSQ GGYAGHQNTP AQSFADRLAQ ENSP00000304078/1-1011 LLNRALNRTN NPPGNWKKPS DSLSVASSSR EGYVSHHNTP AQSFANRLAQ ENSBTAP00000021370/1-1014 LLNRALNRNV NAPGNWKKPS DSLSVTSSSR GGYGGRQHTP AQSFADRLAQ bmy_21851T0/1-859 LLNRALNRTT NAPCNWKRPS DSLSVASSSR GGYAGHQNTP AQSFADRLAQ BACU012246/1-439 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000000702/1-1007 RKTTNLPERN SNVWKSFNGT DNHIRFLQKH MPNLEHTTKS FLRNWRIESY ENSP00000304078/1-1011 RKTTNLADRN SNVRRSFNGT DNHIRFLQQR MPTLEHTTKS FLRNWRIESY ENSBTAP00000021370/1-1014 RKTTNLPERN SNVRRSFNGT DNHIRFLQQR MPTLEHTTKS FLRNWRIESY bmy_21851T0/1-859 RKTTNLPERN SNVRRSFNGT DNHIRFLQQR MPTLEHTTKS FLRNWRIESY BACU012246/1-439 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000000702/1-1007 LNDHSEASCD SNGSVLGDRF EGYDGPENLK ANTVYTHSRL RSSFVFKPTL ENSP00000304078/1-1011 LNDHSEATPD SNGSALGDRF EGYDNPENLK ANALYTHSRL RSSLVFKPTL ENSBTAP00000021370/1-1014 LNDHSEAAPD SNGSAPADRF EGYEGHENLK ASALYTHSRL RSSLVFKPTL bmy_21851T0/1-859 LNDHSEASPD SSGSALGDRF EGYDGPENLK ANTVYTHSRL RSSFVFKPTL BACU012246/1-439 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000000702/1-1007 PEQQEVNSCT TDSSNSTVIG SQGNDTPKKI PDTPTGAQHP TDKPSQESTP ENSP00000304078/1-1011 PEQKEVNSCT TGSSNSTIIG SQGSETPKEV PDTPTNVQHL TDKPLPESIP ENSBTAP00000021370/1-1014 PEQQEANSCT TDSSNSTVVG SQGSDTPKKI PDTPTGAQLM TDKPPEEATP bmy_21851T0/1-859 PEQQEVNSCT TDSSNSTLIG SQGSDMPKKI PDTPTGAQHL TDKPSQESTP BACU012246/1-439 ---------- ---------- -----MPKKI PDTPTGAQHL TDKPSQESTP 601 650 ENSTTRP00000000702/1-1007 KLPLQSEAPK THTLQVPERN LAVLIPTTNG PTDSNKHLCT TLSVNKQTEN ENSP00000304078/1-1011 KLPLQSEAPK MHTLQVPENH SVALNQTTNG HTESNNYIYK TLGVNKQTEN ENSBTAP00000021370/1-1014 KSSLHPEAPK MHTLQVPESH PPALNPTTNG PTESNNYLYT TLCANKQTEN bmy_21851T0/1-859 KLPLPSEASK THTLQVPESH LAVLAPTTNG PTDSNNYLYT TLSVNKQTEN BACU012246/1-439 KLPLQSEASK THTLQVPESH LAVLTPTTNG PTDSNNYLYT TLSVNKQTEN 651 700 ENSTTRP00000000702/1-1007 LKNQQNENLL KRRSFPFTDH SKANLNHGNS KHYVYSTLTR NRIRQPEKTK ENSP00000304078/1-1011 LKNQQTENLL KRRSFPLFDN SKANLDPGNS KHYVYSTLTR NRVRQPEKPK ENSBTAP00000021370/1-1014 PKNQQNENLL KRRSFPFFDH SKANMDHGNS KHYVYSTLTR NPVRQPEKLK bmy_21851T0/1-859 LKNQQNENLL KRRSFPFVDH SKANLNHGNN KHYVYSTFTR NPIRQPEKPK BACU012246/1-439 LKNQQNENLL KRRSFPFVEH SKANLNHGNS KHYVYSTFTR NPIRQPEKPK 701 750 ENSTTRP00000000702/1-1007 EDLLKSSRSV XXXXXXXXX- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000304078/1-1011 EDLLKSSKSM HNVTHNLEED ---EEEVTKR NSPSGTTTKS VSIAALLDVN ENSBTAP00000021370/1-1014 EDLLKSSKSM HSMTHGVEEE EEGEEEVPKG DPPSGTGNKS ISMAALLDVN bmy_21851T0/1-859 EDLLKSSKSV HNVTHAMEED E--EEEVTKR DPPSGTAIKS ISIAALLDVN BACU012246/1-439 EDLFKSSKSI HNVTHAMEED E--EEEVTKR DPPSGTAIKS ISIAALLDVN 751 800 ENSTTRP00000000702/1-1007 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000304078/1-1011 KEESNKELAS KKEVKGSPSF LKKGSQKLRS LLSLTPDKKE NLSKNKAPAF ENSBTAP00000021370/1-1014 KEEPNKEVTS KKEVKGSPSF LKKGSQKLRS LLSLAPEKKD NLSKNKAPAF bmy_21851T0/1-859 KEEPNKELTS KKEVKGSPSF LKKGSQKLRT LLSLTPEKKE NLSKNKAPAF BACU012246/1-439 KEEPNKELTS KKEVKGSPSF LKKGSQKLRS LLSLTPEKKE NLSKNRAPAF 801 850 ENSTTRP00000000702/1-1007 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000304078/1-1011 YRLCSSSDTL VSEGEENQKP KKSDTKVDSS PRRKHSSSSN SQGSIHKSKE ENSBTAP00000021370/1-1014 YRMCSSSDTL ISEAEENQKQ KKSEPKNDSS PRRKHSSSSN SPGSIHKSKE bmy_21851T0/1-859 YRMCSSSDTL VSEAEENQKQ KKSEPKIDSS PRRKHSSSSS SPGSIHKGKE BACU012246/1-439 YRMCSSSDTL VSEAEENQKQ KKSEPKIDSS PRRKHSSSSS SPGSIHKGKE 851 900 ENSTTRP00000000702/1-1007 XXXXXXXXXX XXXXXDESKT IPS-GPVESK F-EKAGDASA PRFNTEQIQY ENSP00000304078/1-1011 DVTVSPSQEI NAPPDENKRT -PSPGPVESK FLERAGDASA PRFNTEQIQY ENSBTAP00000021370/1-1014 DVAVHSPKRI HSPSDESNKT IASSGPAESK FSERAGDASA PRFNTEQIQY bmy_21851T0/1-859 DVAVCSSQGI HSSPDESNKT IPSSGPVESK FLERAGDASA PRFNTEQIQY BACU012246/1-439 DVAVCSSQGI HSSPDESNKT IPSSGPVESK FLERAGDASA PRFNTEQIQY 901 950 ENSTTRP00000000702/1-1007 RDSKEIKAIV VRERKPASSP RPKPNDELIR THSIDRRVYS RFEPFCSIES ENSP00000304078/1-1011 RDSREINAVV TPERRPTSSP RPTSS-ELLR SHSTDRRVYS RFEPFCKIES ENSBTAP00000021370/1-1014 QDSKEIKAVV APERKPTSSP RAKPNDELLR THSIERRVYS RFEPFCKIES bmy_21851T0/1-859 RDSKEIKAVV VPERKPASSP RPKPNDELIR THSIDRRVYS RYEPFCKIES BACU012246/1-439 QDSKEIKAVV VPERKPASSP RPKPNDKLIR THSIDRRVYS RFEPFCKIES 951 1000 ENSTTRP00000000702/1-1007 SIQPTSNMPN TSTHHPEMKS STMGNSYGRS SPMLNYNTGV YHSYQPNENK ENSP00000304078/1-1011 SIQPTSNMPN TSINRPEIKS ATMGNSYGRS SPLLNYNTGV YRSYQPNENK ENSBTAP00000021370/1-1014 SIQPTSNMPN SSTHRPEVKS STMGNSYGRS SPMLNYNTGV YHSFQPNENK bmy_21851T0/1-859 SVQPTSNMPN TSTHHPEMKS STMGNSYGRS SPMLNYNTGV YHSYQPNENK BACU012246/1-439 SSQPTSNMPN TSTHHPEMKS STMGNSYGRS SPMLNYNTGV YHSYQPNENK 1001 1050 ENSTTRP00000000702/1-1007 FRGLIQKFGN FINKNK ENSP00000304078/1-1011 FRGFMQKFGN FIHKNK ENSBTAP00000021370/1-1014 FRGFMQKFGN FIHKNK bmy_21851T0/1-859 FRGFIQKFGN FIHKNK BACU012246/1-439 FRGFIQKFGS FIHKNK