KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:07 2014 Check: 00 .. Name: ENSP00000264554/1-582 Len: 679 Check: 3205 Weight: 1.00 Name: ENSTTRP00000015287/1-555 Len: 679 Check: 5634 Weight: 1.00 Name: ENSBTAP00000021391/1-575 Len: 679 Check: 9499 Weight: 1.00 Name: bmy_06628T0/1-498 Len: 679 Check: 5903 Weight: 1.00 Name: BACU006555/1-466 Len: 679 Check: 9034 Weight: 1.00 // 1 50 ENSP00000264554/1-582 MTQGPGGRAP PAPPAPPEPE APTTFCALLP RMPQWKFAAP GGFLGRGPAA ENSTTRP00000015287/1-555 ---------- ---------- ---------- -MPQWKFAAP AGFLGRGPAA ENSBTAP00000021391/1-575 MTQGPGGRAP PAPPAPPEPE APTTFCALLP RMPQWKFAAP AGFLSRGPAA bmy_06628T0/1-498 ---------- ---------- ---------- ---------- ---------- BACU006555/1-466 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000264554/1-582 ARAAGASGG- --ADPQPEPA GPGGVPALAA AVLGACEPRC AAPCPLPALS ENSTTRP00000015287/1-555 ARAAGGAGAA GEAEPEPEPA GSAGVPALAA AVLGACEPRC TAPCPLPALS ENSBTAP00000021391/1-575 ARAAGGAGA- --ADPEPEPA SPAGVPALAA ADPNCQAVLC WPPPP----- bmy_06628T0/1-498 ---------- ---------- ---------- ---------- ---------- BACU006555/1-466 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000264554/1-582 RCRGAGSRGS RGGRGAAGSG DAAAAAEWIR KGSFIHKPAH GWLHPDARVL ENSTTRP00000015287/1-555 RCRAAGARGS RGARGAAGPP D-SAADEWMR KGSFIHKPAH GXXXXXXXXX ENSBTAP00000021391/1-575 -----RRRWG PGSHGVTAGP Q--LPWEWVR KAGFCITPAA GWIHDHSRKL bmy_06628T0/1-498 ---------- ---------- ---------- ---------- ---------- BACU006555/1-466 ---------S RGARGVAGPP D-AAADEWIR KGSFIHKPAH GWLHPDARVL 151 200 ENSP00000264554/1-582 GPGVSYVVRY MGCIEVLRSM RSLDFNTRTQ VTREAINRLH EAVPGVRGSW ENSTTRP00000015287/1-555 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXEAINRLH EAVPGIRGSW ENSBTAP00000021391/1-575 SPFVSSWVQY MGCIEVLRSM RSLDFSTRTQ VTREAINRLH EAVPGVRGSW bmy_06628T0/1-498 ---------- MGCIEVLRSM RSLDFSTRTQ VTREAINRLH EAVPGIRGSW BACU006555/1-466 GPGVSYIVRY MGCIEVLRSM RSLDFSTRTQ VTREAINRLH EAVPGIRGSW 201 250 ENSP00000264554/1-582 KKKAPNKALA SVLGKSNLRF AGMSISIHIS TDGLSLSVPA TRQVIANHHM ENSTTRP00000015287/1-555 KKKAPNKALA SILGKSNLRF AGMSIAVSIS IDGLNLSVPA THQIIASHHM ENSBTAP00000021391/1-575 KKKAPNKALA SILGKSNLRF AGMSIAVSIS IDGLNLSVPA TRQIIANHHM bmy_06628T0/1-498 KKKAPNKALA SILGKSNLRF AGMSIAVSIS IDGLNLSVPA TRQIIANHHM BACU006555/1-466 KKKAPNKALA SILGKSNLRF AGMSVAVSIS IDGLNLS--- ---------- 251 300 ENSP00000264554/1-582 PSISFASGGD TDMTDYVAYV AKDPINQR-- ---------- ---------- ENSTTRP00000015287/1-555 QSISFASGGD TDMVDYVAYV AKDPINQR-- ---------- ---------- ENSBTAP00000021391/1-575 QSISFASGGD TDMADYVAYV AKDPINQR-- ---------- ---------- bmy_06628T0/1-498 QSISFASGGD TDMADYVAYV AKDPINQRGE ARWGRVGRSG WSASASRGPA BACU006555/1-466 ---------- -DMADYVAYV AKDPINQR-- ---------- ---------- 301 350 ENSP00000264554/1-582 -------ACH ILECCEGLAQ SIISTVGQAF ELRFKQYLHS PPKVALPPER ENSTTRP00000015287/1-555 -------ACH ILECCEGLAQ SVISTVGQAF ELRFKQYLHS PPRVVVPPGR ENSBTAP00000021391/1-575 -------ACH ILECCEGLAQ SVISTVGQAF ELRFKQYLHS PPRVVVPPER bmy_06628T0/1-498 DAAPRPPACH ILECCEGLAQ SVISTVGQAF ELRFKQYLHS PPRVVVPPGR BACU006555/1-466 -------ACH ILECCEGLAQ SVISTVGQAF ELRFKQYLHS PPRVVVPPGR 351 400 ENSP00000264554/1-582 LAGPEESAWG DEEDSLEHNY YNSIPGKEPP LGGLVDSRLA LT-QPCA--- ENSTTRP00000015287/1-555 LTGPEDSAWG DEDET-EHSY YNRTPGKEPP LGGLVDSRLT PAQQPCA--- ENSBTAP00000021391/1-575 LTGMEDSAWG DEEEV-EHNY YNSLPGKEPP PGGLVDSRLA LT-QPCALGV bmy_06628T0/1-498 LTGPEDSAWG DEDEA-GHNY YNRTPGKEPP LGGLVDSRLT PAQQPCA--- BACU006555/1-466 LTGPEDLAWG DEDET-EHNY YNRTPGKEPP LGGLVDSRLT PAQQPCA--- 401 450 ENSP00000264554/1-582 LTALDQGPSP SLRDACSLPW DVGST-GTAP PGDGYVQADA RGPPDHEEHL ENSTTRP00000015287/1-555 LGALGQGASP ARRDARGPQW DVGPSGAP-- PGDGYVQADP RGPRDYEDHL ENSBTAP00000021391/1-575 LGALGQGASP ARRDARGLQW DVGPS-VPAQ PGDGYVQADA RGPRDYEDHL bmy_06628T0/1-498 LGALGQGASP ARRDARGPQW DVGPS-AP-- PGDGYVQADA RGPRDYEDHL BACU006555/1-466 LGALGQGASP ARRDARGPQW DVGPS-AP-- PGDGYVQADA RGPRDYEDHL 451 500 ENSP00000264554/1-582 YVNTQGLDAP E---PEDSPK KDLFDMR--- ---------- -PFEDALKLH ENSTTRP00000015287/1-555 YVNTQGLDGP ETLQPEDSPK KDLFDMR--- ---------- -PFEDALRLH ENSBTAP00000021391/1-575 YVNTQGLDGP ESLQPEDSPK KDLFDMR--- ---------- -PFEDALRLH bmy_06628T0/1-498 YVNTQGLDGP EPLQPEDSPK KDLFDMR--- ---------- -PFEDALRLH BACU006555/1-466 YVNTQGLDGP EPLQPEDSPK KDLFDMRGSC PPPPAGSSPT GPFEDALRLH 501 550 ENSP00000264554/1-582 ECSVAAGVTA APLPLEDQWP SPPTRRAPVA PTEEQLRQEP WYHGRMSRRA ENSTTRP00000015287/1-555 ECSVAAGPAA APLPVEDQWP SPPTRRAPIA PTEEQLRQEP WYHGQMSRRA ENSBTAP00000021391/1-575 ECSVAAGSVA APLPVEDQWP SPPTRRAPIA PTEEQLRQEP WYHGQMSRRA bmy_06628T0/1-498 ECSVAAGPAA APLPVEDQWP SPPTRRAPIA PTEEQLRQEP WYHGQMSRRA BACU006555/1-466 ECSVAAGPAA APLPVEDQWP SPPTRRAPIA PTEEQLRQEP WYHGQMSRRA 551 600 ENSP00000264554/1-582 AERMLRADGD FLVRDSVTNP GQYVLTGMHA GQPKHLLLVD PEGVVRTKDV ENSTTRP00000015287/1-555 AEKLLRVDGD FLVRDSVTNP GQYVLTGMHA GQPKHLLLVD PEGVVRTKDV ENSBTAP00000021391/1-575 AEKLLRADGD FLVRDSVTNP GQYVLTGMHG GQPKHLLLVD PEGVVRTKDV bmy_06628T0/1-498 AEKLLRVDGD FLVRDSVTNP GQYVLTGMHA GQPKHLLLVD PEGVVVVLXL BACU006555/1-466 AEKLLRVDGD FLVRDSVTNP GQYVLTGMHA GQPKHLLLVD PEGVVRTKDV 601 650 ENSP00000264554/1-582 -LFESISH-- ------LIDH HLQNGQPIVA A--ESELHLR GVV------- ENSTTRP00000015287/1-555 -LFESISH-- ------LIDY HLQNGQPIVA A--ESELHLR GVV------- ENSBTAP00000021391/1-575 -LFESISH-- ------LIDY HLQNGQPIVA A--ESELHLR GVV------- bmy_06628T0/1-498 WLLSPLPPDG PVVALGALSL SLDPGRAGIA AVSPSSAWVS GIFLLQLALG BACU006555/1-466 -LFESISH-- ------LIDY HLQNGQPIVA A--ESELHLR GVV------- 651 700 ENSP00000264554/1-582 ---------- SREP------ --------- ENSTTRP00000015287/1-555 ---------- RREP------ --------- ENSBTAP00000021391/1-575 ---------- KREP------ --------- bmy_06628T0/1-498 WAGSTPPGDG AHDPFLPPSP LPAASLHLE BACU006555/1-466 ---------- KREP------ ---------