KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:14 2014 Check: 00 .. Name: ENSP00000358131/1-843 Len: 1719 Check: 7056 Weight: 1.00 Name: ENSTTRP00000004953/1-843 Len: 1719 Check: 1537 Weight: 1.00 Name: ENSBTAP00000021435/1-843 Len: 1719 Check: 3333 Weight: 1.00 Name: bmy_19733T0/1-811 Len: 1719 Check: 4517 Weight: 1.00 Name: BACU007216/1-1714 Len: 1719 Check: 342 Weight: 1.00 // 1 50 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ------MTLD ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ------MTLD ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ------MTLD bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ------MTLD BACU007216/1-1714 MKWKDKDKFL QENKVITHCV YVQVGGGLNF DLCPPYINCL KVLNDHMTLD 51 100 ENSP00000358131/1-843 MDAVLSDFVR STGAEPGLAR DLLEGKNWDV NAALSDFEQL RQVHAGNLPP ENSTTRP00000004953/1-843 MDAVLSDFVR STGAEPGLAR DLLEGKNWDV SAALSDFEQL RQVHAGNLPP ENSBTAP00000021435/1-843 MDAVLSDFVR STGAEPGLAR DLLEGKNWDV SAALSDFEQL RQVHAGNLPQ bmy_19733T0/1-811 MDAVLSDFVR STGAEPGLAR DLLEGKNWDV SAALSDFEQL RQVHAGNLPP BACU007216/1-1714 MDAVLSDFVR STGAEPGLAR DLLEGKNWDV SAALSDFEQL RQVHAGNLPP 101 150 ENSP00000358131/1-843 SFSEGSGGSR TPEKGFSDRE PTRPPRPILQ RQDDIVQEKR LSRGISHASS ENSTTRP00000004953/1-843 PFSEGSGGSR TPEKGFSDRE STRPPRPTLQ RQDDIVQEKR LSRGISHASS ENSBTAP00000021435/1-843 PFSEGGGGSR TPEKGFSDRE STRPPRPILQ RQDDIIQEKR LSRGISHASS bmy_19733T0/1-811 PFSEGSGGSR TPEKGFSDRE STRPPRPTLQ RQDDIVQEKR LSRGISHASS BACU007216/1-1714 PFSEGSGGSR TPEKGFSDRE STRPPRPTLQ RQDDIVQEKR LSRGISHASS 151 200 ENSP00000358131/1-843 SIVSLARSHV SSNGGGGGSN EHPLEMPICA FQLPDLTVYN EDFRSFIERD ENSTTRP00000004953/1-843 SIVSLARSHV SSNGGGGGSS EHPLEMPICA FQLPDLTVYN EDFRSFIERD ENSBTAP00000021435/1-843 SIVSLARSHV SSNGGGGGSS EHPLEMPICA FQLPDLTVYN EDFRSFIERD bmy_19733T0/1-811 SIVSLARSHV SSNGGGGGSS EHPLEMPICA FQLPDLTVYN EDFRSFIERD BACU007216/1-1714 SIVSLARSHV SSNGGGGGSS EHPLEMPICA FQLPDLTVYN EDFRSFIERD 201 250 ENSP00000358131/1-843 LIEQSMLVAL EQAGRLNWWV SVDPTSQRLL PLATTGDGNC LLHAASLGMW ENSTTRP00000004953/1-843 LIEQSMLVAL EQAGRLNWWV SVDPTCQRLL PLATTGDGNC LLHAASLGMW ENSBTAP00000021435/1-843 LIEQSMLVAL EQAGRLNWWV SVDPTCQRLL PLATTGDGNC LLHAASLGMW bmy_19733T0/1-811 LIEQSMLVAL EQAGRLNWWV SVDPTCQRLL PLATTGDGNC LLHAASLGMW BACU007216/1-1714 LIEQSMLVAL EQAGRLNWWV SVDPTCQRLL PLATTGDGNC LLHAASLGMW 251 300 ENSP00000358131/1-843 GFHDRDLMLR KALYALMEKG VEKEALKRRW RWQQTQQNKE SGLVYTEDEW ENSTTRP00000004953/1-843 GFHDRDLMLR KALYALMEKG AEKEALKRRW RWQQTQQNKE XXXXXXXXXX ENSBTAP00000021435/1-843 GFHDRDLVLR KALYALMDKG AEKEALKRRW RWQQTQQNKE SGLVYTEDEW bmy_19733T0/1-811 GFHDRDLMLR KALYALMEKG AEKEALKRRW RWQQTQQNKE SGLVYTEDEW BACU007216/1-1714 GFHDRDLMLR KALYALMEKG AEKEALKRRW RWQQTQQNKE SGLVYTEDEW 301 350 ENSP00000358131/1-843 QKEWNELIKL ASSEPRMHLG TNGANCGGVE SSEEPVYESL EEFHVFVLAH ENSTTRP00000004953/1-843 XXXXXXXXXX XXXXXXXXXX XXXXXXXXVE SSEEPVYESL EEFHVFVLAH ENSBTAP00000021435/1-843 QKEWNELIKL ASSEPRMHLG TNGASCGGVE SSEEPVYESL EEFHVFVLAH bmy_19733T0/1-811 QKEWNELIKL ASSEPRMHLG TNGANCGGVE SSEEPVYESL EEFHVFVLAH BACU007216/1-1714 QKEWNELIKL ASSEPRMHLG TNGANCGGVE SSEEPVYESL EEFHVFVLAH 351 400 ENSP00000358131/1-843 VLRRPIVVVA DTMLRDSGGE AFAPIPFGGI YLPLEVPASQ CHRSPLVLAY ENSTTRP00000004953/1-843 VLRRPIVVVA DTMLRDSGGE AFAPIPFGGI YLPLEVPASQ CHRSPLVLAY ENSBTAP00000021435/1-843 VLRRPIVVVA DTMLRDSGGE AFAPIPFGGI YLPLEVPASQ CHRSPLVLAY bmy_19733T0/1-811 VLRRPIVVVA DTMLRDSGGE AFAPIPFGGI YLPLEVPASQ CHRSPLVLAY BACU007216/1-1714 VLRRPIVVVA DTMLRDSGGE AFAPIPFGGI YLPLEVPASQ CHRSPLVLAY 401 450 ENSP00000358131/1-843 DQAHFSALVS MEQKENTKEQ AVIPLTDSEY KLLPLHFAVD PGKGWEWGKD ENSTTRP00000004953/1-843 DQAHFSALVS MEQKENAKEQ AVIPLTDSEH KLLPLHFAVD PGKGWEWGKD ENSBTAP00000021435/1-843 DQAHFSALVS MEQKENAKEQ AVIPLTDSEH KLLPLHFAVD PGKGWEWGKD bmy_19733T0/1-811 DQAHFSALVS MEQKENAKEQ AVIPLTDSEH KLLPLHFAVD PGKGWEWGKD BACU007216/1-1714 DQAHFSALVS MEQKENAKEQ AVIPLTDSEH KLLPLHFAVD PGKGWEWGKD 451 500 ENSP00000358131/1-843 DSDNVRLASV ILSLEVKLHL LHSYMNVKWI PLSSDAQAPL AQPESPTASA ENSTTRP00000004953/1-843 DNDNVRLASV ILSLEVKLHL LHGYMNVKWI PVSSDAQAPL AQPESPTASA ENSBTAP00000021435/1-843 DNDNVRLASV ILSLEVKLHL LHGYMNVKWI AVSSDAQAPL AQPESPTASA bmy_19733T0/1-811 DNDNVRLARG QIASAAWLH- ---------- --ECEVD--- --PSVL---- BACU007216/1-1714 DNDNVRLASV ILSLEVKLHL LHGYMNVKWI PVSSDAQ--- --PESPTASA 501 550 ENSP00000358131/1-843 GDEPRSTPES GDSDKESVGS SSTSNEGGRR KEKSKRDREK DKKRADSVAN ENSTTRP00000004953/1-843 GDEPRSTPES GESDKESVGS SSASNEGSKR KEKSKRDREK DKKRADSVAN ENSBTAP00000021435/1-843 GDEPRSTPES GESDKESVGS SSASNEGSKR KEKSKRDREK DKKRADSVAN bmy_19733T0/1-811 ---------- GCTDKESVGS SSASNEGSKR KEKSKRDREK DKKRADSVAN BACU007216/1-1714 GDEPRSTPES GESDKESVGS SSASNEGSKR KEKSKRDREK DKKRADSVAN 551 600 ENSP00000358131/1-843 KLGSFGKTLG SKLKKNMGGL MHSKGSKPGG VGTGLGGSSG TETLEKKKKN ENSTTRP00000004953/1-843 KLGSFGKTLG SKLKKNMGGL MHSKGSKPGG MGTGSGVSSG TETLEKKKKN ENSBTAP00000021435/1-843 KLGSFGKTLG SKLKKNMGGL MHSKGSKPGG VGTGSGVSGG TETLEKKKKN bmy_19733T0/1-811 KLGSFGKTLG SKLKKNMGGL MHSKGSKPGG MGTGSGVSSG TETLEKKKKN BACU007216/1-1714 KLGSFGKTLG SKLKKNMGGL MHSKGSKPGG MGTGSGVSSG TETLEKKKKN 601 650 ENSP00000358131/1-843 SLKSWKGGKE EAAGDGPVSE KPPAESVGNG GSKYSQEVMQ SLSILRTAMQ ENSTTRP00000004953/1-843 SLKSWKGGKE EAAGDGPVTE KPTSESVGNG GSKYSQEVMQ SLSILRIAMQ ENSBTAP00000021435/1-843 SLKSWKGGKE EAAGDGPVSE KPTSESVGNG GSRYSQEVLQ SLSIMRIAMQ bmy_19733T0/1-811 SLKSWKGGKE EAAGDGPVTE KPTSESVGNG GSKYSQEVMQ SLSILRIAMQ BACU007216/1-1714 SLKSWKGGKE EAAGDGPVTE KPTSESVGNG GSKYSQEVMQ SLSILRIAMQ 651 700 ENSP00000358131/1-843 GEGKFIFVGT LKMGHRHQYQ EEMIQRYLSD AEERFLAEQK QKEAERKIMN ENSTTRP00000004953/1-843 GEGKFIFVGT LKMGHRHQYQ EEMIQRYLSD AEERFLAEQK QKEAESKIMN ENSBTAP00000021435/1-843 GEGKFIFVGT LKMGHRHQYQ EEMIQRYLTD AEERFLAEQK QKETERKIMN bmy_19733T0/1-811 GEGKFIFVGT LKMGHRHQYQ EEMIQRYLSD AEERFLAEQK QKEAERKIMN BACU007216/1-1714 GEGKFIFVGT LKMGHRHQYQ EEMIQRYLSD AEERFLAEQK QKEAERKIMN 701 750 ENSP00000358131/1-843 GGIGGGPPPA KKPEPDAREE QPTGPPAESR AMAFSTGYPG DFTIPRPSGG ENSTTRP00000004953/1-843 GGVGSGPPPA KKPEPDGGEE LLTAPPAESK AVALSTGYPG GFTIPRPSGG ENSBTAP00000021435/1-843 GGVGSGPPPA KKPEPDGGEE LLTAPPAESK AVAFSAGYPG GFTVPRPSGG bmy_19733T0/1-811 GGVGSGPPPA KKPEPDGGEE LLTAPPAESK VVALSTGYPG GFTIPRPSGG BACU007216/1-1714 GGVGSGPPPA KKPEPDGGEE LLTAPPVESK AVALSTGYPG GFTIPRPSGG 751 800 ENSP00000358131/1-843 GVHCQEPRRQ LAGGPCVGGL PPYATFPRQC PPGRPYPHQD SIPSLEPGSH ENSTTRP00000004953/1-843 GVHCQEPRRQ MAGGPCGGGL PPYATFPRQC PPGRPYPHQD SIPSLEPGSH ENSBTAP00000021435/1-843 GVHCQEPRRQ LAGGPCGGGL PPYATFPRQC PPGRPYPHQD SISSLEPGSH bmy_19733T0/1-811 GVHCQEPRRQ MAGGPCGGGL PPYATFPRQC PPGRPYPHQD SIPSLEPGSH BACU007216/1-1714 GVHCQEPRRQ MAGGPCGGGL PPYATFPRQC PPGRPYPHQD SIPSLEPGSH 801 850 ENSP00000358131/1-843 SKDGLHRGAL LPPPYRVADS YSNGYREPPE PDGWAGGLRG LPPTQTKCKQ ENSTTRP00000004953/1-843 SKDGVHRGAL LPPHFRVADS YSNGYREPPE PDGWAGGPRG LPPTQTKCKQ ENSBTAP00000021435/1-843 SKDGAHRGAP LPPHFRVADS YSNGYREPPE PDGWAGGPRG LPPTQTKCKQ bmy_19733T0/1-811 SKDGVHRGAL LPPHFRVADS YSNGYREPPE PDGWAGGPRG LPPTQTKCKQ BACU007216/1-1714 SKDGVHRGAL LPPHFRVADS YSNGYREPPE PDGWAGGPRG LPPTQTKCKQ 851 900 ENSP00000358131/1-843 PNCSFYGHPE TNNFCSCCYR EELRRREREP DGELLVHRF- ---------- ENSTTRP00000004953/1-843 PNCSFYGHPE TNNFCSCCYR EELRRREREP GGELLVHRF- ---------- ENSBTAP00000021435/1-843 PNCSFYGHPE TNNFCSCCYR EELRRREREP GGELLVHRF- ---------- bmy_19733T0/1-811 PNCSFYGHPE TNNFCSCCYR EELRRREREP GGELLVHRF- ---------- BACU007216/1-1714 PNCSFYGHPE TNNFCSCCYR EELRRREREL GGELLVHRPF NNRFSDSWEQ 901 950 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 ILAWAPGVRK GLEPELPGTL ICSNLRVTFQ PCGWQRSEET PLSSEYDFSL 951 1000 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 ANIGRLEAVN GLSRVQLLRP GSLLKFIPEE ILIHGQDFRL LRVGFEAGGL 1001 1050 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 EPQAFQSETK DGMSFLLQVT MAIVQARAQN RQAQQYAGIT LSKAGQSSVS 1051 1100 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 RKPPIPLLET SEDWEIERKK QGARGWRLST VNERFDVATS DLLRCGGFYT 1101 1150 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 ASDPNKEDIR VVESMLQAGH SDVVLVDTMD ELPSLADVQL AHLRLRALCL 1151 1200 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 PDSSVAEDKW LSALDGTRWL DYVRSCLRKA SDISVLVTSR VRSVVLQERG 1201 1250 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 DRDFNGLLSS LVQLLSAPEA RTLLGFQSLV QREWVAAGHP FLTRLGGTGA 1251 1300 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 SEEAPVFLLF LDCVWQLLQQ SPAEFEFSEF FLLALHDSVR VPDTLTFLRD 1301 1350 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 TPWERGKQNR QFNTYTQVYT AGYSQPPAGN SVNPQLSVWD WDLRYSKEQI 1351 1400 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 LQFHNPGYDP EHCPDSWLPR QQFSMDATVY VGGLDEKVSE PLLWELFLQA 1401 1450 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 GPVVNTHMPK DRVTGQHQGY GFVEFLSEED ADYAIKIMNM IKLYGKPIRV 1451 1500 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 NKASAHNKNL DVGANIFIGN LDPEIDEKLL YDTFSAFGVI LQTPKIMRDP 1501 1550 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 DTGNSKGYAF INFASFDASD AAIEAMNGQY LCNRPITVSY AFKKDSKGER 1551 1600 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 HGSAAERLLA AQNPLSQADR PHQLFADAPP PPSAPNPVVS SLGSGLPPPG 1601 1650 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 MSQMQLAHHG PHGLGHPHAG PPGSGGQPPP RPPPGMPHPG PPPMGMPPRG 1651 1700 ENSP00000358131/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004953/1-843 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021435/1-843 ---------- ---------- ---------- ---------- ---------- bmy_19733T0/1-811 ---------- ---------- ---------- ---------- ---------- BACU007216/1-1714 PPFGSPMGHP GPMPPHGMRG PPPLMPPHGY TGPPRPPPYG YQRGPLPPPR 1701 1750 ENSP00000358131/1-843 ---------- --------- ENSTTRP00000004953/1-843 ---------- --------- ENSBTAP00000021435/1-843 ---------- --------- bmy_19733T0/1-811 ---------- --------- BACU007216/1-1714 PTPRPPVPPR GPLRGPLPQ