KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:18 2014 Check: 00 .. Name: ENSP00000279036/1-578 Len: 663 Check: 2647 Weight: 1.00 Name: ENSBTAP00000021457/1-578 Len: 663 Check: 7577 Weight: 1.00 Name: ENSTTRP00000013101/1-578 Len: 663 Check: 7133 Weight: 1.00 Name: bmy_08790T0/1-577 Len: 663 Check: 7031 Weight: 1.00 Name: BACU015451/1-578 Len: 663 Check: 6606 Weight: 1.00 // 1 50 ENSP00000279036/1-578 ---------- ---------- ---------- ---------- ---------M ENSBTAP00000021457/1-578 ---------- ---------- ---------- ---------- ---------M ENSTTRP00000013101/1-578 ---------- ---------- ---------- ---------- ---------M bmy_08790T0/1-577 PSKAYPGSRC GNRTPASGTA PEVASQTLFL LEAGLPRRRG HWEAETAAGM BACU015451/1-578 ---------- ---------- ---------- ---------- ---------M 51 100 ENSP00000279036/1-578 AAAMPLALLV LLLLGPGGWC LAEPPRDSLR EELVITPLPS GDVAATFQFR ENSBTAP00000021457/1-578 AAPVRIFLLV LLLLGPGGWG RAEPPRDSLR EELVITPLPS GDVAATFQFR ENSTTRP00000013101/1-578 AAAAPLSLLL LLLLGPGVWG QTEPPRDSLR EELVITPLPS GDVAATFQFR bmy_08790T0/1-577 AAAAPLCLLV LLLLGPGVWG QTEPPRDSLR EELVISPLPS GDVAATFQFR BACU015451/1-578 AAAAPLCLLV LLLLGPGVWG QTEPPRDSLR EELVITPLPS GDVAATFQFR 101 150 ENSP00000279036/1-578 TRWDSELQRE GVSHYRLFPK ALGQLISKYS LRELHLSFTQ GFWRTRYWGP ENSBTAP00000021457/1-578 TRWDSELQRE GVSHYRLFPK ALGQLISKYS LRELHLSLTQ GFWRTRYWGT ENSTTRP00000013101/1-578 TRWDSELQRE EVSHYRLFPK ALGQLISKYS LRELHLSLTQ GFWRTRYWGT bmy_08790T0/1-577 TRWDSELQRE EVSHYRLFPK ALGQLISKYS LRELHLSLTQ GFWRTRYWGT BACU015451/1-578 TRWDSELQRE EVSHYRLFPK ALGQLISKYS LRELHLSLTQ GFWRTRYWGT 151 200 ENSP00000279036/1-578 PFLQAPSGAE LWVWFQDTVT DVDKSWKELS NVLSGIFCAS LNFIDSTNTV ENSBTAP00000021457/1-578 PFLQAPSGAE LWAWFQDTVT DVDESWKELS NVLSGIFCAS LNFIDSTNTV ENSTTRP00000013101/1-578 PFLQAPSGAE LWAWFQDTVT DVDKSWKELS NVLSGIFCAS LNFIDSTNTV bmy_08790T0/1-577 PFLQAPSGAE LWAWFQDTVT DVDKSWKELS NVLSGIFCAS LNFIDSTNTV BACU015451/1-578 PFLQAPSGAE LWAWFQDTVT DVDESWKELS NVLSGIFCAS LNFIDSTNTV 201 250 ENSP00000279036/1-578 TPTASFKPLG LANDTDHYFL RYAVLPREVV CTENLTPWKK LLPCSSKAGL ENSBTAP00000021457/1-578 TPTASFKPLG LANGTDHSFL RYAVLPREVV CTENLTPWKK LLPCSSKAGL ENSTTRP00000013101/1-578 TPSASFKPLG LANGTDHSFL RYAVLPREVV CTENLTPWKK LLPCSSKAGL bmy_08790T0/1-577 TPSASFKPLG LAN------- ---------- ---------- --------GL BACU015451/1-578 TPSASFKPLG LANGTDHSFL RYAVLPREVV CTENLTPWKK LLPCSSKAGL 251 300 ENSP00000279036/1-578 SVLLKADRLF HTSYHSQAVH IRPVCRNARC TSISWELRQT LSVVFDAFIT ENSBTAP00000021457/1-578 SVLLKADRLF HTSYHSQAVH IRPVCRNARC TSVSWELRQT LSVVFDAFVT ENSTTRP00000013101/1-578 SVLLKADRLF HTSYHSQAVH IRPVCRDARC ASISWELRQT LSVVFDAFVT bmy_08790T0/1-577 SVLLKADRLF HTSYHSQAVH IRP---DARC ASISWELRQT LSVVFDAFVT BACU015451/1-578 SVLLKADRLF HTSYHSQAVH IRPVCRDARC ASISWELRQT LSVVFDAFVT 301 350 ENSP00000279036/1-578 GQGKK----- ---------- ---------- ---------- -DWSLFRMFS ENSBTAP00000021457/1-578 GQGKK----- ---------- ---------- ---------- -DWSLFRMFS ENSTTRP00000013101/1-578 GQGKQ----- ---------- ---------- ---------- -DWSLFRMFS bmy_08790T0/1-577 GQGKQGKLPW QPISAHPLPA PPHLRGAGLV PPLRNPSLCS SDWSLFRMFS BACU015451/1-578 GQGKQ----- ---------- ---------- ---------- -DWSLFRMFS 351 400 ENSP00000279036/1-578 RTLTEPCPLA SESRVYVDIT TYNQDNETLE VHPPPTTTYQ DVILGTRKTY ENSBTAP00000021457/1-578 RTLTEPCPLA SESRVYVDVT SYGQDNETLE VYPPPLTTYQ DVILGTRKTY ENSTTRP00000013101/1-578 RTLTEPCPLA SESRVYVDVT NYSQDNETLE VYPAPLTTYQ DVVLGTRKTY bmy_08790T0/1-577 RTLTEPCPLA SESRVYVDVT NYSQDNETLE VYPPPLTTYQ DVVLGTRKTY BACU015451/1-578 RTLTEPCPLA LESRVYVDVT NYSQDNETLE VYPPPLTTYQ DVVLGTRKTY 401 450 ENSP00000279036/1-578 AIYDLLDTAM INNSRNLNIQ LKWKRPPENE APPVPFLHAQ RYVSGYGLQK ENSBTAP00000021457/1-578 AVYDLLDAAV VSNSRSLNIQ LKWKRPPENE APPVPFLYAQ RYVSGYGLQS ENSTTRP00000013101/1-578 AVYDLLDTAV INSSRSLNLQ LKWKRPPGNE APPTPFLYAQ RYVSGYGLHN bmy_08790T0/1-577 AVYDLLDTA- ---------- ---------- APPTPFLYAQ RYVSGYGLHN BACU015451/1-578 AIYDLLDTAV INNSRSLNLQ LKWKRPPGNE APPTPFLYAQ RYVSGYGLHN 451 500 ENSP00000279036/1-578 GELSTLLYNT HPYRAFPVLL LDTVPWYLRL YVHTLTITSK GKENKPSYIH ENSBTAP00000021457/1-578 GQLSTLLYNT HPYRAFPVLL LDTVPWYLRL YVHTLTITSK GKENKPSYIH ENSTTRP00000013101/1-578 GELSTLLYNT HPYRAFPVLL LDTVPWYLRL YVHTLTITSK GKENKPSYIH bmy_08790T0/1-577 GELSTLLYNT HPYRAFPVLL LDTVPWYLRL YVHTLTITSK GKENKP---- BACU015451/1-578 GELSTLLYNT HPYRAFPVLL LDTVPWYLRL YVHTLTITSK GKENKPSYIH 501 550 ENSP00000279036/1-578 YQPAQDRLQP HLLEMLIQLP ANSVTKVSIQ FERALLKWTE YTPDPNHGFY ENSBTAP00000021457/1-578 YQPAQDRMQP HLLEMLIQLP ASSITKVSIQ FERALLKWTE YTPDPNHGFY ENSTTRP00000013101/1-578 YQPAQDRMQP HLLEMLIQLP ASSVTKVSIQ FERALLKWTE YTPDPNHGFY bmy_08790T0/1-577 ---------- ---------- ---ITKVSIQ FERALLKWTE YTPDPNHGFY BACU015451/1-578 YQPAQDRMQP HLLEMLIQLP ASSVTKVSIQ FERALLKWTE YTPDPNHGFY 551 600 ENSP00000279036/1-578 VSPSVLSALV PSMVAAKPVD WEESPLFNSL FPVSDGSNYF VRLYTEPLLV ENSBTAP00000021457/1-578 VSPSVLSALV PSVVAAKPGD WEESPLFNSL FPVSDSSSYF VRLYTEPLLV ENSTTRP00000013101/1-578 VSPSVLSALV PSEVAAQPVD WEESPLFSTL FPASDSSSYF VRLYTEPLLV bmy_08790T0/1-577 VSPSVLSALV PSEVATQPVD WEESPLFNTL FPVSDSSSYF VRLYTEPLLV BACU015451/1-578 VSPSVLSALV PSEVAAQPVD WEESPLFNTL FPVSDSSSYF VRLYTEPLLV 601 650 ENSP00000279036/1-578 NLPTPDFSMP YNVICLTCTV VAVCYGSFYN LLTRTFHIEE PRTGGLAKRL ENSBTAP00000021457/1-578 SLPTPDFSMP YNVVCLTCTV VAVCYGSFYN LLTRTFQIEE PRKGGLVKRL ENSTTRP00000013101/1-578 SLPTPDFSMP YNVICLTCTV VAVCYGSFYN LLTRTFQIEE PSKGGLARRL bmy_08790T0/1-577 NLPTPDFSMP YNVICLTCTV VAVCYGSFYN LLTRTFQIEE PSKGGLAKRL BACU015451/1-578 NLPTPDFSMP YNVICLTCTV VAVCYGSFYN LLTRTFQIEE PSKGGLAKRL 651 700 ENSP00000279036/1-578 ANLIRRARGV PPL ENSBTAP00000021457/1-578 ANLIRRARGV PPL ENSTTRP00000013101/1-578 ANLIRRARGV PPL bmy_08790T0/1-577 ANLIRRARGV PPL BACU015451/1-578 ANLIRRARGV PPL