KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:21 2014 Check: 00 .. Name: ENSTTRP00000012262/1-1142 Len: 1377 Check: 4179 Weight: 1.00 Name: ENSP00000386569/1-1143 Len: 1377 Check: 3708 Weight: 1.00 Name: ENSBTAP00000021476/1-1140 Len: 1377 Check: 4868 Weight: 1.00 Name: bmy_17388T0/1-900 Len: 1377 Check: 3498 Weight: 1.00 Name: BACU000755/1-1366 Len: 1377 Check: 7568 Weight: 1.00 // 1 50 ENSTTRP00000012262/1-1142 MEKRETFVQA VSKELI-GEF LQ-----FIQ L------DXX XXXXXXXXXX ENSP00000386569/1-1143 MEKRETFVQA VSKELV-GEF LQ-----FVQ L------DKE ASDPFSLNEL ENSBTAP00000021476/1-1140 MEKRETFIQA VSKELI-GKF LQ-----FIQ L------DND TCDPFNLNEL bmy_17388T0/1-900 MEKRETFVQA VSKELI-GEF LQ-----FIQ L------DKD ASDPFNLSEL BACU000755/1-1366 --MREGLDVA AGRELCLGPW LLCQRHWVLS LSAAFPGQKD ASDPFNLSEL 51 100 ENSTTRP00000012262/1-1142 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX GWQPVEAPGE GSMETEQGSK ENSP00000386569/1-1143 LDELSRKQKE ELWQRLKNLL TDVLLESPVD GWQVVEAQGE DNMETEHGSK ENSBTAP00000021476/1-1140 IDELSRKQKE ELWQRLKNLL VDMLLESPVE GWQTAEAPSE DSVRAEQDSK bmy_17388T0/1-900 LDELSRKQKE ELWQRLKNLL TDVLVESPVD GWQPVEAPGE G--------- BACU000755/1-1366 LDELSRKQKE ELWQRLKNLL TDVLVESPVD GWQPVEAPGE GSMETEQGSK 101 150 ENSTTRP00000012262/1-1142 MKKNIEIIHA ITSVILASVS VINESENYEA LLECAVILNG ILYALPESER ENSP00000386569/1-1143 MRKSIEIIYA ITSVILASVS VINESENYEA LLECVIILNG ILYALPESER ENSBTAP00000021476/1-1140 MHRNIEIIHA VTSVILASVS VINERENCEP LLECAVILNG ILYALPEGER bmy_17388T0/1-900 -----KIIHA ITSVILASVS VINESENYEA LLECAVILNG VSYALPDSER BACU000755/1-1366 MKKNIEIIHA ITSVILASVS VINESENYEA LLECAVILNG VSYALPDSER 151 200 ENSTTRP00000012262/1-1142 ELQGSIQDLC VMWWERGLPA KEDMGKTAFV MLLRRSLKTK T------GAD ENSP00000386569/1-1143 KLQSSIQDLC VTWWEKGLPA KEDTGKTAFV MLLRRSLETK T------GAD ENSBTAP00000021476/1-1140 ALQGSIQDLC VKWWERGLPA KENMGKTAFI MLLRRSLRTK T------GAD bmy_17388T0/1-900 ELQGSIQDLC VMWWERGLPA KEDMGKTAFV MLLRRSLKTK TVCSLSKGAD BACU000755/1-1366 GLQGSIQDLC VMWWERGLPA KEDMGKTAFV MLLRRSLKTK T------GAD 201 250 ENSTTRP00000012262/1-1142 ICRLWRIHQA LYCFDYDLEE SREIKDMLLE CFINVHYI-K EEXXXXXXXX ENSP00000386569/1-1143 VCRLWRIHQA LYCFDYDLEE SGEIKDMLLE CFININYIKK EEGRRFLSCL ENSBTAP00000021476/1-1140 ICRLWRIHQA LYCFDYHLEE SREIKDMLLE CFINVNYIKK EEGRRFLSSL bmy_17388T0/1-900 ICRLWRIHRA LYCFDYDLEE SREIEDMLLE CFINVNYIRK EEGRRFLSSL BACU000755/1-1366 ICRLWRIHRA LYCFDYDLEE SRDIEDMLLE CFINVNYIRK EEGRRFLSSL 251 300 ENSTTRP00000012262/1-1142 XXXXXXXXXX XXXXXXXXXX XXXXSLMVHI AEVYFRAWKK ASGKILEAIE ENSP00000386569/1-1143 FNWNINFIKM IHGTIKNQLQ GLQKSLMVYI AEIYFRAWKK ASGKILEAIE ENSBTAP00000021476/1-1140 FNWNINFIKM IHGTIKNQLQ GLPKSLMVHI AEIYFRAWKK ASGKILEAIE bmy_17388T0/1-900 FNWNINFIKM IHGTIKNQLQ GLQKSLMVHI AEVYFRAWRK ASGKILEAIE BACU000755/1-1366 FNWNINFIKM IHGTIKNQLQ GLQKSLMVHI AEVYFRAWRK ASGKILEAIE 301 350 ENSTTRP00000012262/1-1142 NGCIQDFLYH GVHLPRKSPV HTRVREVLSY LHRQKEVRQG VEEMLYRLYK ENSP00000386569/1-1143 NDCIQDFMFH GIHLPRRSPV HSKVREVLSY FHHQKKVRQG VEEMLYRLYK ENSBTAP00000021476/1-1140 NDCIQDLMHH GVHLPRRSPV HPRVRKVLSY FHHQKEVRQG VEEMLYKLYK bmy_17388T0/1-900 NGCIQDFLYH GVHLPRKSPV HTRVREVLSY FHRQKEVRQG VEEMLYRLYK BACU000755/1-1366 NGCIQDFLYH GVHLPRKSPV HTRVREVLSY FHRQKEVRQG VEEMLYRLYK 351 400 ENSTTRP00000012262/1-1142 PILWRGLKAR NSEVRSNAAL LFVEAFPIRD PNFNAIEMDS EIQKQFEELY ENSP00000386569/1-1143 PILWRGLKAR NSEVRSNAAL LFVEAFPIRD PNLHAIEMDS EIQKQFEELY ENSBTAP00000021476/1-1140 PILWRGLKAR NSEVRSNAAL LFVEAFPIRH PGFNAIEMDS EIQKQFEELY bmy_17388T0/1-900 PILWRGLKAR NSEVRSNAAL LFVEAFPIRD PNFNAIEMDS EIQKQFEELY BACU000755/1-1366 PILWRGLKAR NSEVRSNAAL LFVEAFPIRD PNFNAIEMDS EIQKQFEELY 401 450 ENSTTRP00000012262/1-1142 SLLEDPYPMV RSTGILGVCK ITSKYWEMLP PTILIDLLKK VTEELAFDTS ENSP00000386569/1-1143 SLLEDPYPMV RSTGILGVCK ITSKYWEMMP PTILIDLLKK VTGELAFDTS ENSBTAP00000021476/1-1140 SLLEDPYPMV RSAGILGVCK ITSKYWEMMP PTILIDLLKK VTEELAFDLS bmy_17388T0/1-900 ---------- ---------- ---------- ---------- ---------- BACU000755/1-1366 SLLEDPYPMV LSTGILGVCK ITSKYWEMLP PTILIDLLKK VTEELAFDTS 451 500 ENSTTRP00000012262/1-1142 SADVRCSVFK CLPIILDNKL SHPLLEQLLP ALKYCLHDNS EKVRVAFVDM ENSP00000386569/1-1143 SADVRCSVFK CLPMILDNKL SHPLLEQLLP ALRYSLHDNS EKVRVAFVDM ENSBTAP00000021476/1-1140 SADVRCSVFK CLPIILDNKL SHPLLEQLLP ALKYCLHDNS EKVRVAFVDM bmy_17388T0/1-900 ---------- CLPIILDNKL SHPLLEQLLP ALKFCLHDNS EKVRVAFVDM BACU000755/1-1366 SADVRCSVFK CLPIILDNKL SHPLLEQLLP ALKFCLHDNS EKVRVAFVDM 501 550 ENSTTRP00000012262/1-1142 LLKVKAVRAA KXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000386569/1-1143 LLKIKAVRAA KFWKICPMEH ILVRLETDSR PVSRRLVSLI FNSFLPVNQP ENSBTAP00000021476/1-1140 LLKVKAVRAA KFWKICPMEH ILARLESDSR PVCRRLVGLI FNSFLPVNQP bmy_17388T0/1-900 LLKVKAVRAA KFWKICPMEH ILVRLELDSL PVTRRLVGLI FNSFLPVNQP BACU000755/1-1366 LLKVKAVRAA KFWKICPMEH ILVRLELDSL PVTRRLVGLI FNSFLPVNQP 551 600 ENSTTRP00000012262/1-1142 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000386569/1-1143 EEVWCERCVT LVQMNHAAAR RFYQYAHEHT ACTNIAKLIH VIRHCLNACI ENSBTAP00000021476/1-1140 EAVWCERCVA LLQMNHAAAR RFYQHAHEHT ACTNIAKLIH VIRHCLNACI bmy_17388T0/1-900 EEVWCERCVT LLQMNHAAAR RFYQHAHEHT ACTNIAKLIH VIRHCLNACI BACU000755/1-1366 EEVWCERCVT LLQMNHAAAR RFYQHAHEHT ACTNIAKLIH VIRHCLNACI 601 650 ENSTTRP00000012262/1-1142 XXXXXXXXXX XXXXXXXXXX XXXALDQTLS ISDTASMAGL LEIVVILWRS ENSP00000386569/1-1143 QRAVREPPED EEEEDGREKE NVTVLDKTLS VNDVACMAGL LEIIVILWKS ENSBTAP00000021476/1-1140 RRALSACRED AEE---PGKE NASALDQTLS VSDAASMAGL LETVVILWRS bmy_17388T0/1-900 RRALSACGED DEE---RGKE NVSALDQTLS ISDAASMAGL LEIVVILWRS BACU000755/1-1366 RRALSACGED DEE---RGKE NVSALDQTLS ISDAASMAGL LEIVVILWRS 651 700 ENSTTRP00000012262/1-1142 IHRSMENNKE ARVYTVSKFA SMLPEYMKAF KDDRCKTPLS VLASLMPASA ENSP00000386569/1-1143 IDRSMENNKE AKLYTINKFA SVLPEYLKVF KDDRCKIPLF MLMSFMPASA ENSBTAP00000021476/1-1140 IHRSLENNKE ARVYTVDKFA SVLPQYMRVF TDERCRAPLC VLASLMPAPA bmy_17388T0/1-900 IHRSMENNKE AKVYTVSKFA SMLPEYMKVF ---------- ---------- BACU000755/1-1366 IHRSMENNKE AKVYTVSKFA SMLPEYMKVF KDDRCKTPLS VLASLMPASA 701 750 ENSTTRP00000012262/1-1142 VPTFSCGVIS TLRNQEEGTA DKSYCILLDC LCSWGQVGHI LELVCDSLPE ENSP00000386569/1-1143 VPPFSCGVIS TLRSREEGAV DKSYCTLLDC LCSWGQVGHI LELVDNWLPT ENSBTAP00000021476/1-1140 VPTFSCGVIS TLRNQEEGTA DRTYCILLDC LCSWGHVGHV LELVFDWLPE bmy_17388T0/1-900 ---------- ---------- ---------- ---------- ---------- BACU000755/1-1366 VPTFSCGVIS TLRNQEEGTA DKSYCILLDC LCSWGQVGHI LELVCDSLPE 751 800 ENSTTRP00000012262/1-1142 EQPQSKGNSA SKRKVRVQDP RPVKPGLALV YVEYLLTHPK NRECLLSAPQ ENSP00000386569/1-1143 EHAQAKSNTA SKGRVQIHDT RPVKPELALV YIEYLLTHPK NRECLLSAPR ENSBTAP00000021476/1-1140 EPPQSKGNSA SKRKVRVQDP CPVKPGLALV FVEYLLTHPK NRECLLSAPQ bmy_17388T0/1-900 -----KGNSA SKRKVRVQDP RPVKPGLALV YVEYLLTHPK NRECLLSAPQ BACU000755/1-1366 EQPQSKGNSA SKRKVRVQDP RPVKPGLALV YVEYLLTHPK NRECLLSAPQ 801 850 ENSTTRP00000012262/1-1142 KKLNRLLKAL ETSKV----- ---------- ---------- ---------- ENSP00000386569/1-1143 KKLNHLLKAL ETSKA----- ---------- ---------- ---------- ENSBTAP00000021476/1-1140 KKLNCLLKAL ETSKG----- ---------- ---------- ---------- bmy_17388T0/1-900 KKLNRLVKAL ETSK------ ---------- ---------- ---------- BACU000755/1-1366 KKLNRLLKAL ETSKASPRKQ PVTATAARGS HPSGPGVGRQ RDGGGSGGCR 851 900 ENSTTRP00000012262/1-1142 ---------- ---------- ---------- ---------- ---------- ENSP00000386569/1-1143 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021476/1-1140 ---------- ---------- ---------- ---------- ---------- bmy_17388T0/1-900 ---------- ---------- ---------- ---------- ---------- BACU000755/1-1366 GQGLDELDPE GSLSSTYEKL SSCPFTGGLE EGGHSPCCSG SPLPAQLCPH 901 950 ENSTTRP00000012262/1-1142 ---------- ---------D LESILQSPGG SPHHLSEGTA LRAFSLHCRL ENSP00000386569/1-1143 ---------- ---------D LESLLQTPGG KPRGFSEAAA PRAFGLHCRL ENSBTAP00000021476/1-1140 ---------- ---------N LESILQTPDG SPPRLSEGTA LRAFSLYCRL bmy_17388T0/1-900 ---------- ---------- ---------- ---------- ---------- BACU000755/1-1366 LMRCLLSRNL ACRRPVPQVD LESILQSPGG SPHHLSEGAV LRAFSLHCRL 951 1000 ENSTTRP00000012262/1-1142 SIHLQHESCS EGKVYLSTLE DTGFWLESKV LSFIQDQEEE YLKLHRVVYQ ENSP00000386569/1-1143 SIHLQHKFCS EGKVYLSMLE DTGFWLESKI LSFIQDQEED YLKLHRVIYQ ENSBTAP00000021476/1-1140 SIHLQHKFCS EGKVYLSTLE DTGSWLESKV LSFIRDQDEE YLKLHRVVYQ bmy_17388T0/1-900 ---------- ---------- ---------- ---------- ---------- BACU000755/1-1366 SIHLQHKSCS EGKVYLSTLE DTGFWLESKV LSFIQDQEEE YLKLHRVVYQ 1001 1050 ENSTTRP00000012262/1-1142 QIIQTYLTVC KDVIVVGLGD CMFQTQLLQR SLGIMQTVKG FFYVSLLLGI ENSP00000386569/1-1143 QIIQTYLTVC KDVVMVGLGD HQFQMQLLQR SLGIMQTVKG FFYVSLLLDI ENSBTAP00000021476/1-1140 QIIQTYLTVC KDVIMVGLGD CKFQTHLLQW SLGIMQTVKG FFYVSLLLGI bmy_17388T0/1-900 ----TYLTVC KDVIVVGLGD CMFQTQLLQR SLGIMQTVKG FFYVSLLLGI BACU000755/1-1366 QIIQTYLTVC KDVILVGLGD CMFQTQLLQR SLGIMQTVKG FFYVSLLLGI 1051 1100 ENSTTRP00000012262/1-1142 LKEVTRSSLT QKADSEKEVS TLFDLVQKVF QQMLECMARS FRKQPEEGLQ ENSP00000386569/1-1143 LKEITGSSLI QKTDSDEEVA MLLDTVQKVF QKMLECIARS FRKQPEEGLR ENSBTAP00000021476/1-1140 LKEITGSSLT WKTDSEEEVA VVFDMVQKVF QQMLECMAWS FKKQPEEGLQ bmy_17388T0/1-900 LKEVTRSSLT QKADSEKEVS TLFDLVQKVF QQMLECMARS FRKQPEEGLQ BACU000755/1-1366 LKEVTRSSLT QKADSEKEVS TLFDLVQKVF QQMLECMARS FRKQPEEGLQ 1101 1150 ENSTTRP00000012262/1-1142 LLYSVQTPLH EFISTVQSWH VDTPVHRGVL STLIAASVVE ISHRLRK--- ENSP00000386569/1-1143 LLYSVQRPLH EFITAVQSRH TDTPVHRGVL STLIAGPVVE ISHQLRK--- ENSBTAP00000021476/1-1140 LLYSVQTPLH EFISTVQSWH VDKPVHRGVF STLIAASVVE ISHWLRK--- bmy_17388T0/1-900 LLYSVQTPLH EFISTVQSWH VDTPVHRGVL STLIAASVVE ISHRLRK--- BACU000755/1-1366 LLYSVQTPLH EFISTVQSWH VDTPVHRGVL STLIAASVVE ISHRLRKLID 1151 1200 ENSTTRP00000012262/1-1142 ---------- --VSDTKELT PPEGLSALPP FSRCLIGIII KSPNVVRSFL ENSP00000386569/1-1143 ---------- --VSDVEELT PPEHLSDLPP FSRCLIGIII KSSNVVRSFL ENSBTAP00000021476/1-1140 ---------- --VSDTEELT PPEGLSALPP FSRCLIGIII KSPNLVRSFL bmy_17388T0/1-900 ---------- --VSDTKELT PPEGLSALPP FSRCLIGIII KSPNVVRSFL BACU000755/1-1366 TTVYSNRLII IMVSDTKELT PPEGLSALPP FSRCLIGIII KSPNVVRSFL 1201 1250 ENSTTRP00000012262/1-1142 DELKACVISE DIEGIVCLTA VMHIILVINK GKHKSSKVKG VAATVHRKLK ENSP00000386569/1-1143 DELKACVASN DIEGIVCLTA AVHIILVINA GKHKSSKVRE VAATVHRKLK ENSBTAP00000021476/1-1140 DELKACVISE DIEGIVCLTA VVHIILVINK GKHKTSKVKD VAASIERKLK bmy_17388T0/1-900 DELKACVISE DIEGIVCLTA VTHIILVINK ESWSWG--PG VT-------- BACU000755/1-1366 DELKACVISE DIEGIVCLTA VTHIILVINK GKHKSSKVKG VAATVHRKLK 1251 1300 ENSTTRP00000012262/1-1142 TFMEITLEED SLERFLYESS ----SRT--- ---------- ---------- ENSP00000386569/1-1143 TFMEITLEED SIERFLYESS ----SRT--- ---------- ---------- ENSBTAP00000021476/1-1140 TFMEITLEED SLERFLYESS ----SRT--- ---------- ---------- bmy_17388T0/1-900 --------QD LVPEATVSSS QANKERTNP- ---------- ---------- BACU000755/1-1366 TFMEITLEED SLESKCITSQ LFGHQRTDVL AASGLHREDV DAYIQMYNQD 1301 1350 ENSTTRP00000012262/1-1142 ---------- ---------- ---------- ---------- ------LGAL ENSP00000386569/1-1143 ---------- ---------- ---------- ---------- ------LGEL ENSBTAP00000021476/1-1140 ---------- ---------- ---------- ---------- ------LGAL bmy_17388T0/1-900 ---------- ---------- ---------- ---------- ------PGLF BACU000755/1-1366 GVNDIAGVLK TIVRIHMTTK CLGEWINAIS KEQSGNENLV SKKYELTGLF 1351 1400 ENSTTRP00000012262/1-1142 LNS------- ---------- ------- ENSP00000386569/1-1143 LNS------- ---------- ------- ENSBTAP00000021476/1-1140 LNS------- ---------- ------- bmy_17388T0/1-900 L--------E PV-------- ------- BACU000755/1-1366 ATDLVRLQSE PIYQKHLVLS RCNGGHI