KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:24 2014 Check: 00 .. Name: ENSP00000299492/1-876 Len: 1000 Check: 7164 Weight: 1.00 Name: ENSBTAP00000021483/1-876 Len: 1000 Check: 3231 Weight: 1.00 Name: ENSTTRP00000001854/1-853 Len: 1000 Check: 2693 Weight: 1.00 Name: bmy_12319T0/1-854 Len: 1000 Check: 4318 Weight: 1.00 Name: BACU004475/1-909 Len: 1000 Check: 9626 Weight: 1.00 // 1 50 ENSP00000299492/1-876 MASDASHALE AALEQMDGII AGTKTGADLS DGTCEPGLAS PASYMNPFPV ENSBTAP00000021483/1-876 MASDASHVLE AALEQMDGII AGTKTGADIS DGTCEPGPTS PGSYMNPFPV ENSTTRP00000001854/1-853 ---------- ---------- --TNTGGDIS DGACEPGLAS AASYMNPFPL bmy_12319T0/1-854 ---------- ---------- ---------- ---------- ---------- BACU004475/1-909 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000299492/1-876 LHLIEDLRLA LEMLELPQER AALLSQIPGP TAAYIK-EWF EESLSQVNHH ENSBTAP00000021483/1-876 LHLVEDLRLA LEMLEHPQER AALLSQIPGP TAAYIK-EWF KESSSQVNHH ENSTTRP00000001854/1-853 LRLVEDLRLA LETLEHSQER AALLSQIPGP TAAYLK-EWF EESLSQVNHH bmy_12319T0/1-854 ---------- ---------- ---------- ---------- ----SQVNHH BACU004475/1-909 ---------- ---------- ------MDGD IDVYKHFAWL KR--SQVNHH 101 150 ENSP00000299492/1-876 SAASNETYQE RLARLEGDKE SLILQVSVLT DQVEAQGEKI RDLEVCLEGH ENSBTAP00000021483/1-876 SAAGNETYQE RLARLEGDKE SLIL------ ---------- ---------- ENSTTRP00000001854/1-853 SAASNETYQE RLARLEGDKE SLILQVSVLT DQVEAQGEKI RDLEVCLEGH bmy_12319T0/1-854 SAASNETYQE RLARLEGDKE SLILQVSVLT DQVEAQGEKI RDLEVCLEGH BACU004475/1-909 SAASNETYQE RLARLEGDKE SLILQVSVLT DQVEAQGEKI RDLEVCLEGH 151 200 ENSP00000299492/1-876 QVKLNAAEEM LQQELLSRTS LETQKLDLMT EVSELKLKLV GMEKEQREQE ENSBTAP00000021483/1-876 ---------- --QELLSRTS LETQKLNLMT EVSELKLKLV GMEKEQKEQE ENSTTRP00000001854/1-853 QVKLNAAEEM LQQELLSRTS LETQKLDLMT EVSELKLKLV GMEKEQREQE bmy_12319T0/1-854 QVKLNAAEEM LQQELLSRTS LETQKLDLMT EVSELKLKLV GMEKEQREQE BACU004475/1-909 QVKLNAAEEM LQQELLSRTS LETQKLDLMT EVSELKLKLV GMEKEQREQE 201 250 ENSP00000299492/1-876 EKQRKAE--- ---------- ---------- ---------- ---------- ENSBTAP00000021483/1-876 EKQKKAE--- ---------- ---------- ---------- ---------- ENSTTRP00000001854/1-853 EKQKKAE--- ---------- ---------- ---------- ---------- bmy_12319T0/1-854 EKQKKAESVL NVISELQEQM CRLQLDIHRQ IQERLSLSRD HPEEVAAGDG BACU004475/1-909 EKQKKAESVL NVISELQEQM CRLQLDIHRQ IQERLSLSRD HPEEVAAGDG 251 300 ENSP00000299492/1-876 ---------- ---------- ---------E LLQELRHLKI KVEELENERN ENSBTAP00000021483/1-876 ---------- ---------- ---------E LLQELRHLKI KVEELENERN ENSTTRP00000001854/1-853 ---------- ---------- ---------E LLQELRHLKI KVEELENERN bmy_12319T0/1-854 AARPQPCGQE CARWEGSPVG TTLKYIGACE LLQELRHLKI KVEELENERN BACU004475/1-909 AARPQPCGQE CARWEGSP-- ---------E LLQELRHLKI KVEELENERN 301 350 ENSP00000299492/1-876 QYEWKLKATK AEVAQLQEQV ALKDAEIERL HSQLSRTAAL HSESHTERDQ ENSBTAP00000021483/1-876 QYEWKLKATK AEVAQLQEQV ALKDAEIERL HSQLSRSAAL HSD-HAEKDQ ENSTTRP00000001854/1-853 QYEWKLKATK AEVAQLQEQV ALKDAEIERL HSQLSRTAAL HND-HAEKDQ bmy_12319T0/1-854 QYEWKLKATK AEVAQLQEQV ALKDAEIERL HSQLSRTAAL HND-HAEKDQ BACU004475/1-909 QYEWKLKATK AEVAQLQEQV ALKDAEIERL HSQLSRTAAL HND-HAEKDQ 351 400 ENSP00000299492/1-876 EIQRLKMGME TLLLANEDKD RRIEELTGLL NQYRKVKEIV MVTQGPSERT ENSBTAP00000021483/1-876 EIQRLKMGME TLLVANEDKD RRIEELTGLL NQYRRVNEIV MATQGPSERT ENSTTRP00000001854/1-853 EIQRLKMGME TLLVANEDKD RRIEELTGLL NQYRRVKEIV MATQGPSERT bmy_12319T0/1-854 EIQRLKMGME TLLVANEDKD RRIEELTGLL NQYRRVKEIV MATQGPSERT BACU004475/1-909 EIQRLKMGME TLLVANEDKD RRIEELTGLL NQYRRVKEIV MATQGPSERT 401 450 ENSP00000299492/1-876 LSINEEEPEG GFSKWNATNK DPEELFKQEM PPRCSSPTVG PPPLPQKSLE ENSBTAP00000021483/1-876 LSINEEDLEG GFRNWNTANK GPEDLFKSEV SPRGSPPTAG PPPLPQKSLE ENSTTRP00000001854/1-853 LSINEEELEG GFRNWNTANK GPEELLKPEV SPRGSSPTAG PPPLPQKSLE bmy_12319T0/1-854 LSINEEELEG GFRNWNTANK GPEELFKPEV SPRGSSPTVG PPPLPQKSLE BACU004475/1-909 LSINEEELEG GFRNWNTANK GPEELFKPEV SPRGSSPTVG PPPLPQKSLE 451 500 ENSP00000299492/1-876 TRAQKKLSCS LEDLRSESVD KCMDGNQPFP VLEPKDSPFL AEHKYPTLPG ENSBTAP00000021483/1-876 TRTQKKLSCS LEDLRSESVD KCVGGNQPSP VVEPKDGPFL AEHKYPTLPG ENSTTRP00000001854/1-853 TRAQKKLSCS LEDLRSESVD KCVGGNQLSP VVEPKDGPFL VEHKYPTLPG bmy_12319T0/1-854 TRAQKKLSCS LEDLRSESVD KCVGGNQLSP VVEPKDGPFL VEHKYPTLPG BACU004475/1-909 SRAQKKLSCS LEDLRSESVD KCVGGNQLSP VVEPKDGPFL VEHKYPTLPG 501 550 ENSP00000299492/1-876 KLSGATPNGE AAKSPPTICQ PDATGSSLLR LR-------- ---DTESGWD ENSBTAP00000021483/1-876 KLPGATPNGE AAKSPPTASP LDPAGSSPLR LR-------- ---DTESGWD ENSTTRP00000001854/1-853 KLSGATPNGE AAGSSPTASP HDPAGSGLLR LR-------- ---DTESGWD bmy_12319T0/1-854 KLSGATPNGE AARSSPTASP HDPAGSGLLR LR-------- ---DTESGWD BACU004475/1-909 KISGATPNGE AARSSPTASP HDPAGSGLLR LNRGRSVSAP VLGDTESGWD 551 600 ENSP00000299492/1-876 DTAVVNDLSS TSSGTESGPQ SPLTPDGKRN PKGIKKFWGK IRRTQSGNFY ENSBTAP00000021483/1-876 DTAMAND-SS MSSGTESSPQ SPLTPDGKRS PKGIKKFWGK IRRTQSGNFN ENSTTRP00000001854/1-853 DTAVVNDLSP TSSGTESSPQ SPLTPDGKRS PKGIKKFWGK IRRTQSGNFN bmy_12319T0/1-854 DTAVVNDLSS MSSGTESSPQ SPLTPDGKRS PKGIKKFWGK IRRTQSGNFN BACU004475/1-909 NTAVVNDLSS MSSGTESSPQ SPVTSDGKRS PKGIKKFWGK IRRTQSGNFN 601 650 ENSP00000299492/1-876 TDTLGMAEFR RGGLRATAGP RLSRTRDSKG QKSDANAPFA QWSTERVCAW ENSBTAP00000021483/1-876 TDAPGVAEFR RGGLRATAGP RLSRTRDPKA QKSDANAPFA QWSTERVCTW ENSTTRP00000001854/1-853 TDAPGVAEFR RGGFRATAGP RLSRTRDPKG QKSDANGPFA QWSTERVCAW bmy_12319T0/1-854 TDAPGVAEFR RGGLRATAGP RLSRTRDPKG QKSDANAPFA QWSTERVCAW BACU004475/1-909 TDAPGVAEFR RGGLRATAGP RLSRTRDPKG QKSDANAPFA QWSTERVCAW 651 700 ENSP00000299492/1-876 LEDFGLAQYV IFARQWVSSG HTLLTATPQD MEKELGIKHP LHRKKLVLAV ENSBTAP00000021483/1-876 LEDFGLAQYV IFARQWVTSG HTLLTATPQD MEKELGIKHP LHRKKLVLAV ENSTTRP00000001854/1-853 LEDFGLAQYV IFARQWVTSG HTLLTATPQD MEKELGIKHP LHRKKLILAV bmy_12319T0/1-854 LEDFGLAQYV IFARQWVTSG HTLLTATPQD MEKELGIKHP LHRKKLVLAV BACU004475/1-909 LEDFGLAQYV IFARQWVTSG HTLLTATPQD MEKELGIKHP LHRKKLVLAV 701 750 ENSP00000299492/1-876 KAINTKQEEK SALLDHIWVT RWLDDIGLPQ YKDQFHESRV DRRMLQYLTV ENSBTAP00000021483/1-876 KAINTKQEEK SALLDHIWVT RWLDDIGLPQ YKDQFHESRV DGRMLQYLTV ENSTTRP00000001854/1-853 KAINTKQEEK SALLDHIWVT RWLDDIGLPQ YKDQFHESRV DGRMLQYLTV bmy_12319T0/1-854 KAINTKQEEK SALLDHIWVT RWLDDIGLPQ YKDQFHESRV DGRMLQYLTV BACU004475/1-909 KAINTKQEEK SALLDHIWVT RWLDDIGLPQ YKDQFHESRV DGRMLQYLTV 751 800 ENSP00000299492/1-876 NDLLFLKVTS QLHHLSIKCA IHVLHVNKFN PHCLHRRPAD ESNLSPSEVV ENSBTAP00000021483/1-876 NDLLFLKVTS QLHHLSIKCA IHVLHVNKFN PHCLHRRPAD ESNLSPSEVV ENSTTRP00000001854/1-853 NDLLFLKVTS QLHHLSIKCA IHVLHVNKFN PHCLHRRPAN ESNLSPSEVV bmy_12319T0/1-854 NDLLSLKVTS QLHHLSIKCA IHVLHVNKFN PHCLHRRPAN ESNLSPSEVV BACU004475/1-909 NDLLFLKVTS QLHHLSIKCA IHVLHVNKFN PHCLHRRPAN ESNLSPSEVV 801 850 ENSP00000299492/1-876 QWSNHRVMEW LRSVDLAEYA PNLRGSGVHG GLIILEPRFT GDTLAMLLNI ENSBTAP00000021483/1-876 QWSNHRVMEW LRSVDLAEYA PNLRGSGVHG GLIILEPRFT GDTLAMLLNI ENSTTRP00000001854/1-853 QWSNHRVMEW LRSVDLAEYA PNLRGSGVHG GLIILEPRFT GDTLAMLLNI bmy_12319T0/1-854 QWSNHRVMEW LRSVDLAEYA PNLRGSGVHG GLIILEPRFT GDTLAMLLNI BACU004475/1-909 QWSNHRVMEW LRSVDLAEYA PNLRGSGVHG GLIILEPRFT GDTLAMLLNI 851 900 ENSP00000299492/1-876 PPQKTLLRRH LTTKFNALIG PEAEQEKREK MASPAYTPLT TTAKVRPRKL ENSBTAP00000021483/1-876 PPQKTLLRRH LTTKFNALIG PEAEQEKREK MTSPAYTPLT TTAKVRPRKL ENSTTRP00000001854/1-853 PPQKTLLRRH LTTKFNALIG PEAEQEKREK MTLPAYTPLT TTAKVRPRKL bmy_12319T0/1-854 PPQKTLLRRH LTTKFNALIG PEAEQEKREK MTSPAYTPLT TTAKVRPRKL BACU004475/1-909 PPQKTLLRRH LTTKFNALIG PEAEQEKREK MTSPAYTPLT TTAKVRPRKL 901 950 ENSP00000299492/1-876 GFSHFGNIRK KKFDESTDYI CPMEPSDGVS DSHRVYSGYR GLSPLDAPEL ENSBTAP00000021483/1-876 GFSHFGNIRK KKFDESTDYI CPMEPSNSVG DGHRAYSGTR GLSTLDAPEL ENSTTRP00000001854/1-853 GFSHFGNIRK KKFDESTDYI CPVEPSNGVG DSHRVCIGYQ GLSPLDAPEL bmy_12319T0/1-854 GFSHFGNIRK KKFDESTDYV CPMEPSNSVG DSHRVCIGYQ GLSPLDAPEL BACU004475/1-909 GFSHFGNIRK KKFDESTDYI CPMEPSNSVG DSHRVCIGYQ GLSPLDAPEL 951 1000 ENSP00000299492/1-876 DGLD------ ----QVGQIS ---------- ---------- ---------- ENSBTAP00000021483/1-876 DGLDQMAPSE GTVTQIGLLS QDIHRLTTML SQDQLLTDSC LATPRSEDWR ENSTTRP00000001854/1-853 DGLD------ ----QVGQIS ---------- ---------- ---------- bmy_12319T0/1-854 DGLD------ ----QVGQIS ---------- ---------- ---------- BACU004475/1-909 DGLDQMSPSE GTLTQIGLLS QDIHRLTTML SQDQLLTDSR LAAPNSEDW-