KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:26 2014 Check: 00 .. Name: ENSP00000313391/1-770 Len: 1379 Check: 1081 Weight: 1.00 Name: ENSBTAP00000021501/1-768 Len: 1379 Check: 7006 Weight: 1.00 Name: ENSTTRP00000011123/1-753 Len: 1379 Check: 2683 Weight: 1.00 Name: BACU015001/1-1250 Len: 1379 Check: 6321 Weight: 1.00 Name: bmy_06112T0/1-838 Len: 1379 Check: 5707 Weight: 1.00 // 1 50 ENSP00000313391/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021501/1-768 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011123/1-753 ---------- ---------- ---------- ---------- ---------- BACU015001/1-1250 ---------- ---------- ---------- ---------- ---------- bmy_06112T0/1-838 MSLKNYAHKS LVVGLLGHKV WVSAAGYVCL RRLHRGSLGV AKCLLVLELA 51 100 ENSP00000313391/1-770 -----MSNEV ETSATNGQPD QQAAPKAPSK KEKKKGPEKT DEYLLARFKG ENSBTAP00000021501/1-768 -----MSNEV ETSATNGQPD QQAAPKAPSK KEKKKGTEKT DEYLLARFKG ENSTTRP00000011123/1-753 ---------- ---------- -QAAPKAPSK KEKKKGTEKT DEYLLARFKG BACU015001/1-1250 -----MSNEA ETSATNGQPD QQAAPKAPSK KEKKKGTEKT DEYLLARFKG bmy_06112T0/1-838 VCLLAMSNEA ETSATNGQPD QQAAPKAPSK KEKKKGTEKT DEYLLARFKG 101 150 ENSP00000313391/1-770 DGVKYKAKLI GIDDVPDARG DKMSQDSMMK LKGMAAAGRS QGQHKQRIWV ENSBTAP00000021501/1-768 DGVKYKAKLI GIDDVPDARG DKMSQDSMMK LKGMAAAARS QGQHKQRIWV ENSTTRP00000011123/1-753 DGVKYKAKLI GIDDVPDARG DKMSQDSMMK LKGMAAAARS QGQHKQRIWV BACU015001/1-1250 DGVKYKAKLI GIDDVPDARG DKMSQDSMMK LKGMAAAARS QGQHKQRIWV bmy_06112T0/1-838 DGVKYKAKLI GIDDVPDARG DKMSQDSMMK LKGMAAAARS QGQHKQRIWV 151 200 ENSP00000313391/1-770 NISLSGIKII DEKTGVIEHE HPVNKISFIA RDVTDNRAFG YVCGGEGQHQ ENSBTAP00000021501/1-768 NISLSGIKII DEKTGVIEHE HPVNKISFIA RDVTDNRAFG YVCGGEGQHQ ENSTTRP00000011123/1-753 NISLSGIKII DEKTGVIEHE HPVNKISFIA RDVTDNRAFG YVCGGEGQHQ BACU015001/1-1250 NISLSGIKII DEKTGVIEHE HPVNKISFIA RDVTDNRAFG YVCGGEGQHQ bmy_06112T0/1-838 NISLSGIKII DEKTGVIEHE HPVNKISFIA RDVTDNRAFG YVCGGEGQHQ 201 250 ENSP00000313391/1-770 FFAIKTGQQA EPLVVDLKDL FQVIYNVKKK EEEKKKIEEA SKAVENGSEA ENSBTAP00000021501/1-768 FFAIKTGQQA EPLVIDLKDL FQVIYNTKKK EEEKKKMEEA NKTVENGSDA ENSTTRP00000011123/1-753 FFAIKTGQQA EPLVVDLKDL FQVIYNVKKK EEEKKKMEEA SKAVENGSEA BACU015001/1-1250 FFAIKTGQQ- ---------- ---------- ------MEEA NKAVENGSEA bmy_06112T0/1-838 FFAIKTGQQA EPLVVDLKDL FQVIYN---- ------MEEA NKAVENGSEA 251 300 ENSP00000313391/1-770 LMILDDQTNK LKSGVDQMDL FGDMSTPPDL NSPT------ ---------- ENSBTAP00000021501/1-768 LMNLDDPPCK LKLGVDQMDL FGDMSTPPDL SSPT------ ---------- ENSTTRP00000011123/1-753 LMNLDDQACK LKLGVDQMDL FGDMSTPPDL SSPT------ ---------- BACU015001/1-1250 LMNLDDQACK LKL------- ---------- ---------- ---------- bmy_06112T0/1-838 LMNLDDQACK LKLGVDQMDL FGDMSTPPDL NSPTLSLLTS SSGYKETSWL 301 350 ENSP00000313391/1-770 ---------E SKDILLVDLN SEIDTNQNSL RENPFLTNGI TSCSLPRPTP ENSBTAP00000021501/1-768 ---------E SKDILLVDLN SEIDTNQNSL QENLFLTNGI TSCSLPRPKP ENSTTRP00000011123/1-753 ---------E SKDILLVDLN SEIDTNQNSL RENLFLTNGI ASCSLPRPKP BACU015001/1-1250 ---------E SKDILLVDLN SEIDTNQNPL RENLFLTNGI TSCSLPRPKP bmy_06112T0/1-838 LKIVPLYLTE SKDILLVDLN SEIDTNQNPL RENLFLTNGI TSCSLPRPKP 351 400 ENSP00000313391/1-770 QASFLPENAF SANLNFFPTP NPDPFRDDPF TQPDQSTPSS FDSLKSPDQK ENSBTAP00000021501/1-768 QASFLPENAF SANLNFFPTP NPDPFRDDPF AQPDQSTPSS SDSLKSPDQK ENSTTRP00000011123/1-753 QASFLPENAF SANLNFFPTP NPDPFRDDPF AQPDQSAPSS SDSLKSPDQK BACU015001/1-1250 QASFLPENAF SANLNFFPTP NPDPFRDDPF AQPDQSTPSS SDSLKSPDQK bmy_06112T0/1-838 QASFLPENAF SANLNFFPTP NPDPFRDDPF AQPDQSTPSS SDSLKSPDQK 401 450 ENSP00000313391/1-770 KENSSSSSTP LSNGPLNGDV DYFGQQFDQI SNRTGKQEAQ AGPWPFSSSQ ENSBTAP00000021501/1-768 KENLSSSSTP LSNGPLNGDV DYFGQQFDQI SNRTGKQEAQ AGPWPLSSTQ ENSTTRP00000011123/1-753 KENLTSSSTP LSNGPLNGDV DYFGQQFDQI SNRTGKQEAQ AGLWPLSSTQ BACU015001/1-1250 KENLSSSSTP LSNGPLNGDV DYFGQQFDQI SNRTGKQEAQ AGLWPLSSTQ bmy_06112T0/1-838 KENLSSSSTP LSNGPLNGDV DYFGQQFDQI SNRTGKQEAQ AGLWPLSSTQ 451 500 ENSP00000313391/1-770 TQPAVRTQNG VSEREQNGFS VKSSPNPFVG SPPKGLSIQN GVKQDLESSV ENSBTAP00000021501/1-768 TQPAVRTHNE VSEREQNGFH IKSSPNPFVG SPPKGLPVPN GVKQDLESSV ENSTTRP00000011123/1-753 TQPAVRTHNG VSEREQNGFH IKSSPNPFVG SPPKGLPVPN GVKQDLESSV BACU015001/1-1250 TQPTVRTHNG VSEREQNGFH IKSSPNPFVG SPPKGLPVPN GVKQDLESSV bmy_06112T0/1-838 TQPAVRTHNG VSEREQNGFH IKSSPNPFVG SPPKGLPVPN GVKQDLESSV 501 550 ENSP00000313391/1-770 QSSPHDSIAI IPPPQSTKPG RGRRTAKSSA NDLLASDIFA PPVSEPSGQA ENSBTAP00000021501/1-768 QSSPHDSIAI IPPPQSTKPG RGRRTAKSPA KDLLAADIFA PPISEPPGQ- ENSTTRP00000011123/1-753 QSLPHDSIAI IPPPQSTKPG RGRRTAKSPA KDLLASDIFA PLASEPPGQT BACU015001/1-1250 QSSPHDSIAI IPPPQSTKPG RGRRTAKSPA KDLLASDIFA PPVSEPPGQT bmy_06112T0/1-838 QSSPHDSIAI IPPPQSTKPG RGRRTAKSPA KDLLASDIFA PPVSEPPGQT 551 600 ENSP00000313391/1-770 SPTGQPTALQ PNPLDLFKTS APAPVGPLVG LGGVTVTLPQ AGPWNTASLV ENSBTAP00000021501/1-768 SP-GQPATLQ TNPLDLFKTS APAPLGPLPG LGGVPVLSAQ AAPWSPAPLV ENSTTRP00000011123/1-753 SP-GQPATIQ TKPLDLFKTS AAAPVGPLGG LGGVPVISAQ TGPWNPAPLV BACU015001/1-1250 ST-GQPATLQ TNPLDLFKTS APAPVGPLGG LGGAPVIPAQ TGPWNPAPLV bmy_06112T0/1-838 ST-GQPATLQ TNPLDLFKTS APAPVGPLGG LGGVPVISAQ TGPWNPAPLV 601 650 ENSP00000313391/1-770 FNQSPSMAPG AMMGGQPSGF SQPVIFGTSP AVSGWNQPSP FAASTPPPVP ENSBTAP00000021501/1-768 FSQSPSMVPG AMMAGQPSGF SQPIVFTTSP SVPGWNQPSS FAVSVSSPPP ENSTTRP00000011123/1-753 FSQSTTMVPG TMMAGQPSGF SQPSVFTTSP AVPGWNQPSS FAASASPPAP BACU015001/1-1250 FSQSTTMVPG TMMAGQPSGF SQPIVFTTSP AVPGWNQPSS FAASASPPAP bmy_06112T0/1-838 FSQSTTMVPG TMMAGQPSGF SQPIVFTTSP AVPGWNQPSS FAASASPPAP 651 700 ENSP00000313391/1-770 VVWGPSASVA PNAWSTTSPL GNPFQSNIFP APAVSTQPPS MHSSLLVTPP ENSBTAP00000021501/1-768 VAWGTSASIT PNTWSANSPL GNPFQSNVFP APAVSTPPPS MLSSLLATPP ENSTTRP00000011123/1-753 VVWGPSASVT PNTWSSTSPL GNPFQSNVFP APTVSAQPPS MLSSLLVTPP BACU015001/1-1250 VVWGPSASVT PNTWSSTSPL GNPFQSNVFP APAVSAQPPS MLSTLLVTPP bmy_06112T0/1-838 VVWGASASVT PNTWSSTSPL GNPFQSNVFP APAVSAQPPS MLSSLLVTPP 701 750 ENSP00000313391/1-770 QPPPRAGPPK DISSDAFTAL DPLGDKEIKD VKEMFKDFQL RQPPAVPARK ENSBTAP00000021501/1-768 QPPPRTGPPK DVPSDAFIAL DPLGDREVKE VKEMFKDFQL RQPPTVPARK ENSTTRP00000011123/1-753 QPPPRTGPPK DVSSDAFVAL DPLGDKEVKE VKEMFKDFQL RQPPTLPARK BACU015001/1-1250 QPPPRTGPPK DVSSDAFVAL DPLGDKEVKE VKEMFKDFQL RQPPTVPARK bmy_06112T0/1-838 QPPPRTGPPK DVSSDAFVAL DPLGDKEVKE VKEMFKDFQL RQPPTVPARK 751 800 ENSP00000313391/1-770 GEQTSSGTLS AFASYFNSKV GIPQENADHD DFDANQLLNK INEPPKPAPR ENSBTAP00000021501/1-768 GEQNSSGTSS AFSNYFNSKV GIPQENADHD DLDANQLLRK INDLPKPAPR ENSTTRP00000011123/1-753 GEQNSAGTSS AFSNYFNNKV GIPQENADHD DFDTNQLLRK INELPKPAPR BACU015001/1-1250 GEQNSSGTSS AFSNYFNNKV GIPQENADHD DFDANQLLRK INELPKPAPR bmy_06112T0/1-838 GELNSSGTSS AFSNYFNNKV GIPQENADHD DFDANQLLRK INELPKPAPR 801 850 ENSP00000313391/1-770 QVSLPVTKST DNAFENPFFK DSFGSSQASV ASS------- ---------- ENSBTAP00000021501/1-768 HSAPPVTKSA DNAFENPFSK DSFHSSPASM ASL------- ---------- ENSTTRP00000011123/1-753 QGALPVSKSA DNAFENPFSK DSFRSSPASM ASP------- ---------- BACU015001/1-1250 QGALPVTKSA DNAFENPFSK DSFRSSPASE PSGHSTRSCL ARADVYQPEV bmy_06112T0/1-838 QGALPITKSA DNAFENPFSK DSFRSSPASV EEE------- ---------- 851 900 ENSP00000313391/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021501/1-768 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011123/1-753 ---------- ---------- ---------- ---------- ---------- BACU015001/1-1250 RLCNLHFRNK SPESGAHFQV SRFSLRLWNF PVGFDISESA LVAEQQSSYD bmy_06112T0/1-838 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000313391/1-770 ---------- ---------- ------QPVS SEMYR----- ---------- ENSBTAP00000021501/1-768 ---------- ---------- ------QPTS SDIYR----- ---------- ENSTTRP00000011123/1-753 ---------- ---------- ------QSTS SDVYR----- ---------- BACU015001/1-1250 SEPVKSCGTP LPTDCRMSSW SSWSKCDPCL KQMFRSRSIE LFGQFNGQKC bmy_06112T0/1-838 ---------- ---------- ------DDCS GSKQD----- ---------- 951 1000 ENSP00000313391/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021501/1-768 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011123/1-753 ---------- ---------- ---------- ---------- ---------- BACU015001/1-1250 VDAVGDRRQC VPTEICEDPE DDCKNDFRCH TGMCIKRRLL CNGDNDCGDF bmy_06112T0/1-838 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000313391/1-770 ---------- ---------- ---------- ---------- --------DP ENSBTAP00000021501/1-768 ---------- ---------- ---------- ---------- --------DP ENSTTRP00000011123/1-753 ---------- ---------- ---------- ---------- --------DP BACU015001/1-1250 SDEDDCENDP RLPCRNKVVE ESELARTAGY GSVPHVVEGL SWINVLGMDP bmy_06112T0/1-838 ---------- ---------- ---------- ---------- --------DG 1051 1100 ENSP00000313391/1-770 FGNPFA---- ---------- ---------- ---------- ---------- ENSBTAP00000021501/1-768 FGNPFA---- ---------- ---------- ---------- ---------- ENSTTRP00000011123/1-753 FGNPFA---- ---------- ---------- ---------- ---------- BACU015001/1-1250 LSTPFNNEYY NGLCDRVWDG NTLTYYRRPW NVASLVYETK ADKNFRTEYY bmy_06112T0/1-838 LMN-LD---- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000313391/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021501/1-768 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011123/1-753 ---------- ---------- ---------- ---------- ---------- BACU015001/1-1250 DEQMQIFRSI IQEKKSNFNA DLTIKYTPSE AIGRLKSKDS EPSDKKDFSN bmy_06112T0/1-838 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000313391/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021501/1-768 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011123/1-753 ---------- ---------- ---------- ---------- ---------- BACU015001/1-1250 YLNAQGSFRF TYSKNETYKL LLSYSSKKPD LEVCFIAFGI NIEYTFCSQY bmy_06112T0/1-838 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000313391/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021501/1-768 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011123/1-753 ---------- ---------- ---------- ---------- ---------- BACU015001/1-1250 DAGVELRDIQ RCLGFNLDLS LTAGLEITGN INSDNCLKRG DGKIENFMSD bmy_06112T0/1-838 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000313391/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021501/1-768 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011123/1-753 ---------- ---------- ---------- ---------- ---------- BACU015001/1-1250 DLIDDVISFI RGGTRKHATE LKEKLLKGAR MINVTDFVNW ASSLNDAPVL bmy_06112T0/1-838 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000313391/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021501/1-768 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011123/1-753 ---------- ---------- ---------- ---------- ---------- BACU015001/1-1250 INQKLSPIYD LIPVKIKDAH LKKQNLERAI ADYINEFSDC QPKKKKKESC bmy_06112T0/1-838 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000313391/1-770 ---------- ---------- --------- ENSBTAP00000021501/1-768 ---------- ---------- --------- ENSTTRP00000011123/1-753 ---------- ---------- --------- BACU015001/1-1250 CLFPWDRMER KTSGPSRDQD LPNEKQRAS bmy_06112T0/1-838 ---------- ---------- ---------