KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:14:27 2014 Check: 00 .. Name: ENSP00000330284/1-328 Len: 370 Check: 7467 Weight: 1.00 Name: ENSBTAP00000021510/1-331 Len: 370 Check: 493 Weight: 1.00 Name: BACU002340/1-300 Len: 370 Check: 9668 Weight: 1.00 Name: bmy_20344T0/1-328 Len: 370 Check: 1826 Weight: 1.00 // 1 50 ENSP00000330284/1-328 MDNASFSEPW PANASGPDPA --LSCSNAS- TLAPLPAPLA VAVPVVYAVI ENSBTAP00000021510/1-331 MHNASYWGPE RANTSCPAPA PTLGCPNASG PAPPLPPPLA VAVPVVYAVI BACU002340/1-300 ---------- ---------- ---------- ---------- ---------- bmy_20344T0/1-328 MHNASSWGPE RANTSCPAPA --LGCPNASG PLPPLPPPLA VAVPVVYAVI 51 100 ENSP00000330284/1-328 CAVGLAGNSA VLYVLLRAPR MKTVTNLFIL NLAIADELFT LVLPINIADF ENSBTAP00000021510/1-331 CAVGLAGNSA VLFVLLRAPR RKTVTNLFIL NLAVADELFT LVLPVNIADF BACU002340/1-300 ---------- ---------- MKTVTNLFIL NLAVADELFT LVLPINIADF bmy_20344T0/1-328 CAVGLAGNSA VLFVLLRAPR MKTVTNLFIL NLAVADELFT LVLPINIADF 101 150 ENSP00000330284/1-328 LLRQWPFGEL MCKLIVAIDQ YNTFSSLYFL TVMSADRYLV VLATAESRRV ENSBTAP00000021510/1-331 LLRRWPFGEL LCKLVVAVDQ YNTFSSLYFL TVMSADRYLV VLATAESRRV BACU002340/1-300 LLRRWPFGEL MCKLIVAIDQ YNTFSSLYFL TVMSADRYLV VLATAELRRV bmy_20344T0/1-328 LLRRWPFGEL MCKLIVAIDQ YNTFSSLYFL TVMSADRYLV VLATAESRRV 151 200 ENSP00000330284/1-328 AGRTYSAARA VSLAVWGIVT LVVLPFAVFA RLDDEQGRRQ CVLVFPQPEA ENSBTAP00000021510/1-331 AGRTYGAARA VSLAVWGVAT LVVLPFAVFA RLDEEQGRRQ CVLVFPQPEA BACU002340/1-300 AGRTYGAARA VSLAVWGVVT LVVLPFAIFA RLDDEQGRRQ CVLVFPQPEA bmy_20344T0/1-328 AGRTYGAARA VSLAVWGVVT LVVLPFAIFA RLDDEQGRRQ CVLVFPQPEA 201 250 ENSP00000330284/1-328 FWWRASRLYT LVLGFAIPVS TICVLYTTLL CRLHAMRLDS HAKALERAKK ENSBTAP00000021510/1-331 LWWRASRLYT LVLGFAIPVS TICVLYTSLL CRLRAIRLDS HAKALDRAKK BACU002340/1-300 FWWRASRLYT LVLGFALPVS TICVLYTTLL CRLRAIRLDN HARALERAKK bmy_20344T0/1-328 FWWRASRLYT LVLGFALPVS TICVLYTTLL CRLRAIRLDN QARALERAKK 251 300 ENSP00000330284/1-328 RVTFLVVAIL AVCLLCWTPY HLSTVVALTT DLPQTPLVIA ISYFITSLSY ENSBTAP00000021510/1-331 RVTVLVVAIL AVCLLCWTPY HLSTVVALTT DLPQTPLVIA VSYFITSLSY BACU002340/1-300 RVTVLVVAIL AVCLLCWTPY HLSTVVALTT DLPQTPVVIA VSYFITSLSY bmy_20344T0/1-328 RVTVLVVAIL AVCLLCWTPY HLSTVVALTT DLPQTPVVIA VSYFITSLSY 301 350 ENSP00000330284/1-328 ANSCLNPFLY AFLDASFRRN LRQLI----- ---------- ---------- ENSBTAP00000021510/1-331 ANSCLNPFLY AFLDDSFRRS LRQLL----- ---------- ---------- BACU002340/1-300 ANSCLNPFLY AFLDDSFRRS LRQLLPLTNI GRNTGKVSYF QRAHGLMVET bmy_20344T0/1-328 ANSCLNPFLY AFLDDSFRRS LRQLL----- ---------- ---------- 351 400 ENSP00000330284/1-328 --------TC RAAA------ ENSBTAP00000021510/1-331 --------AC RTTS------ BACU002340/1-300 ATSSADEMPC HRVILDILLT bmy_20344T0/1-328 --------PC RAA-------